Wall clock time and date at job start Sat Apr 11 2020 06:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 120.00004 * 2 1 4 4 C 1.53008 * 109.46976 * 125.00172 * 3 2 1 5 5 C 1.52994 * 109.46968 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.46786 * 179.97438 * 5 4 3 7 7 O 1.21277 * 120.00160 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99914 * 180.02562 * 6 5 4 9 9 C 1.47431 * 125.64789 * 359.96268 * 8 6 5 10 10 C 1.55392 * 104.87127 * 204.16802 * 9 8 6 11 11 H 1.09004 * 111.18705 * 204.97719 * 10 9 8 12 12 N 1.46494 * 111.02316 * 80.98264 * 10 9 8 13 13 C 1.34774 * 120.00272 * 93.05215 * 12 10 9 14 14 O 1.21286 * 119.99796 * 0.02562 * 13 12 10 15 15 C 1.50699 * 120.00534 * 179.97438 * 13 12 10 16 16 S 1.80994 * 109.47507 * 179.97438 * 15 13 12 17 17 C 1.76201 * 100.00243 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99605 * 0.02562 * 17 16 15 19 19 C 1.38793 * 120.00408 * 180.02562 * 17 16 15 20 20 N 1.31635 * 119.99948 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00463 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47068 * 59.99780 * 21 19 17 23 23 H 1.48494 * 109.47378 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46812 * 300.00131 * 21 19 17 25 25 C 1.55157 * 101.36576 * 323.01456 * 10 9 8 26 26 C 1.47019 * 125.65068 * 180.02562 * 8 6 5 27 27 H 1.09001 * 109.88251 * 59.48348 * 26 8 6 28 28 C 1.53002 * 110.01220 * 298.39933 * 26 8 6 29 29 H 1.08003 * 119.99809 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.99835 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00126 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47078 * 5.00449 * 3 2 1 33 33 H 1.09000 * 109.47441 * 244.99872 * 3 2 1 34 34 H 1.09001 * 109.46991 * 60.00224 * 4 3 2 35 35 H 1.09000 * 109.46791 * 300.00098 * 4 3 2 36 36 H 1.09001 * 109.47065 * 60.00290 * 5 4 3 37 37 H 1.08994 * 109.47791 * 299.99952 * 5 4 3 38 38 H 1.08999 * 110.36190 * 322.99854 * 9 8 6 39 39 H 1.08998 * 110.36491 * 85.21533 * 9 8 6 40 40 H 0.97001 * 120.00377 * 273.05363 * 12 10 9 41 41 H 1.09002 * 109.47124 * 300.00477 * 15 13 12 42 42 H 1.09007 * 109.46996 * 60.00042 * 15 13 12 43 43 H 0.96998 * 120.00212 * 180.02562 * 20 19 17 44 44 H 1.09002 * 110.72219 * 277.04408 * 25 10 9 45 45 H 1.09003 * 110.71618 * 153.95021 * 25 10 9 46 46 H 1.09003 * 109.46658 * 302.11206 * 28 26 8 47 47 H 1.09001 * 109.47565 * 62.10530 * 28 26 8 48 48 H 1.08993 * 109.47396 * 182.11474 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1817 5 6 3.8005 2.6578 1.1813 6 6 4.7570 2.6855 2.3456 7 8 4.8206 1.7387 3.1009 8 7 5.5419 3.7624 2.5474 9 6 5.5675 4.9759 1.7105 10 6 6.9757 5.5906 1.9423 11 1 6.9734 6.6638 1.7517 12 7 7.9851 4.9160 1.1224 13 6 8.3026 5.4046 -0.0928 14 8 7.7531 6.4032 -0.5074 15 6 9.3413 4.7110 -0.9360 16 16 9.5418 5.6008 -2.4993 17 6 10.7758 4.6021 -3.2639 18 1 11.1640 3.7354 -2.7495 19 6 11.2490 4.9292 -4.5270 20 7 10.7762 5.9858 -5.1537 21 14 12.5567 3.8700 -5.3378 22 1 12.0448 2.4847 -5.4940 23 1 12.8889 4.4290 -6.6728 24 1 13.7763 3.8545 -4.4907 25 6 7.1945 5.2939 3.4495 26 6 6.5151 3.9212 3.6378 27 1 7.2611 3.1281 3.5872 28 6 5.7992 3.8761 4.9893 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6213 1.4027 -0.9313 34 1 3.7400 0.5065 1.0920 35 1 2.4773 1.2355 2.1130 36 1 3.0959 3.4846 1.2707 37 1 4.3584 2.7549 0.2500 38 1 5.4360 4.7152 0.6603 39 1 4.7912 5.6721 2.0280 40 1 8.4249 4.1176 1.4541 41 1 10.2915 4.6953 -0.4020 42 1 9.0215 3.6889 -1.1386 43 1 11.1066 6.2143 -6.0366 44 1 6.7109 6.0517 4.0659 45 1 8.2581 5.2326 3.6800 46 1 5.0427 4.6600 5.0259 47 1 5.3218 2.9044 5.1155 48 1 6.5230 4.0321 5.7892 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338144590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:31 Heat of formation + Delta-G solvation = -69.786938 kcal Electronic energy + Delta-G solvation = -26875.112083 eV Core-core repulsion = 23056.043412 eV Total energy + Delta-G solvation = -3819.068671 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.73098 -39.23791 -37.74240 -36.17749 -34.03523 -32.99658 -32.46053 -31.76659 -30.81010 -28.53204 -27.48919 -26.19174 -25.51578 -23.44985 -22.09778 -21.13301 -20.37690 -20.14361 -19.01143 -17.92166 -17.35831 -16.92819 -16.35780 -16.22806 -15.53551 -15.28710 -14.91040 -14.85740 -14.82045 -14.24551 -14.04064 -13.85869 -13.62813 -13.38941 -13.30972 -13.02210 -12.80742 -12.66566 -12.45892 -12.28989 -12.08152 -11.95687 -11.82831 -11.63573 -11.54331 -11.16685 -11.08751 -11.06264 -11.04542 -10.95980 -10.79159 -9.96913 -9.86251 -9.59595 -9.53122 -9.23329 -9.08616 -8.76728 -8.29456 -6.54394 -6.24936 -3.96011 2.00735 2.46071 2.71191 2.92835 2.95120 3.21524 3.25181 3.28015 3.62143 4.03221 4.17355 4.22780 4.44897 4.51661 4.59234 4.69796 4.84755 4.90710 4.99917 5.02081 5.07851 5.10368 5.13046 5.22031 5.23807 5.26346 5.36241 5.40332 5.44504 5.50749 5.53794 5.56322 5.64110 5.73289 5.78292 5.82574 5.87845 5.94372 6.05930 6.08580 6.15339 6.35918 6.49723 6.50243 7.27471 7.55803 7.57867 7.98194 8.31795 8.48365 9.20528 10.82388 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008998 B = 0.002552 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.062771 B =10968.472521 C =13152.302126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.149 4.149 3 C -0.098 4.098 4 C -0.098 4.098 5 C -0.139 4.139 6 C 0.531 3.469 7 O -0.541 6.541 8 N -0.615 5.615 9 C 0.085 3.915 10 C 0.135 3.865 11 H 0.115 0.885 12 N -0.729 5.729 13 C 0.535 3.465 14 O -0.515 6.515 15 C -0.154 4.154 16 S -0.058 6.058 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.137 4.137 26 C 0.132 3.868 27 H 0.076 0.924 28 C -0.161 4.161 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.056 0.944 47 H 0.069 0.931 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.838 -5.678 18.135 24.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.167 4.167 3 C -0.135 4.135 4 C -0.136 4.136 5 C -0.179 4.179 6 C 0.321 3.679 7 O -0.418 6.418 8 N -0.350 5.350 9 C -0.039 4.039 10 C 0.028 3.972 11 H 0.133 0.867 12 N -0.383 5.383 13 C 0.322 3.678 14 O -0.389 6.389 15 C -0.305 4.305 16 S 0.168 5.832 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.175 4.175 26 C 0.029 3.971 27 H 0.094 0.906 28 C -0.219 4.219 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.769 -4.460 17.656 24.089 hybrid contribution 1.701 -2.180 0.048 2.766 sum -14.068 -6.641 17.704 23.568 Atomic orbital electron populations 1.23841 0.95976 1.01760 1.02033 1.22967 0.96022 0.98613 0.99100 1.20817 0.98224 0.95467 0.98966 1.21272 0.97660 0.96132 0.98490 1.21715 0.98090 1.00630 0.97472 1.20404 0.80431 0.80702 0.86371 1.90685 1.68464 1.34854 1.47841 1.48624 1.40060 1.17270 1.29020 1.22964 0.98033 0.86661 0.96266 1.22043 0.86772 0.98713 0.89639 0.86702 1.45948 1.42510 1.31562 1.18234 1.20354 0.82597 0.84251 0.80643 1.90707 1.52658 1.24782 1.70769 1.23539 0.99509 1.04123 1.03334 1.85363 1.52984 1.36994 1.07823 1.22820 1.25801 1.14813 1.05054 0.90983 1.24986 0.96916 0.95513 0.96111 1.70002 1.41507 1.24673 1.14102 0.86227 0.80924 0.80031 0.78350 1.19920 1.20786 1.19928 1.23096 1.02271 0.96547 0.95583 1.21558 0.90778 0.97387 0.87409 0.90624 1.22120 1.00829 1.03197 0.95755 0.88635 0.88650 0.87360 0.91424 0.90602 0.91028 0.91217 0.88955 0.88601 0.89668 0.90238 0.76675 0.89170 0.89252 0.92096 0.88882 0.89096 0.92502 0.91211 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.48 14.32 29.02 0.42 -1.07 16 2 C -0.15 -1.20 9.52 -36.02 -0.34 -1.54 16 3 C -0.10 -0.76 5.66 -27.88 -0.16 -0.92 16 4 C -0.10 -0.88 4.49 -26.73 -0.12 -1.00 16 5 C -0.14 -1.22 4.71 -27.88 -0.13 -1.35 16 6 C 0.53 5.96 7.64 -10.98 -0.08 5.88 16 7 O -0.54 -7.76 15.04 5.56 0.08 -7.68 16 8 N -0.61 -5.92 3.07 -162.71 -0.50 -6.42 16 9 C 0.09 0.76 6.40 -2.26 -0.01 0.75 16 10 C 0.13 1.29 3.46 -65.52 -0.23 1.06 16 11 H 0.12 1.21 7.54 -51.93 -0.39 0.82 16 12 N -0.73 -8.56 5.19 -51.48 -0.27 -8.82 16 13 C 0.54 9.06 7.85 -10.99 -0.09 8.97 16 14 O -0.52 -10.60 15.50 5.55 0.09 -10.51 16 15 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 16 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 17 C -0.54 -15.00 9.50 30.94 0.29 -14.71 16 18 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 19 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 21 Si 0.92 21.15 29.55 -169.99 -5.02 16.12 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C -0.14 -0.95 6.06 -24.90 -0.15 -1.10 16 26 C 0.13 1.12 3.45 -66.95 -0.23 0.89 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 C -0.16 -1.31 9.10 37.16 0.34 -0.97 16 29 H 0.10 0.62 8.06 -52.48 -0.42 0.20 16 30 H 0.10 0.65 7.84 -52.49 -0.41 0.24 16 31 H 0.11 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.07 0.48 7.79 -51.93 -0.40 0.08 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.82 7.85 -51.93 -0.41 0.42 16 38 H 0.08 0.87 7.48 -51.93 -0.39 0.49 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.40 3.96 8.67 -40.82 -0.35 3.60 16 41 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 42 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.09 0.52 7.85 -51.93 -0.41 0.11 16 45 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.73 6.91 -51.93 -0.36 0.38 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 410.90 15.07 6.19 6.19 Total: -1.00 -34.52 410.90 -9.44 -43.96 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -8.16 Total: 1.77 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -0.37 Total: -5.86 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: -0.03 Total: -40.27 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.17 Total: -18.19 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.52 -9.44 -43.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338144590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.826 kcal (2) G-P(sol) polarization free energy of solvation -34.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds