Wall clock time and date at job start Sat Apr 11 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50698 * 120.00228 * 2 1 4 4 C 1.53008 * 109.47189 * 124.99874 * 3 2 1 5 5 C 1.50698 * 109.47189 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00230 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00244 * 180.02562 * 5 4 3 8 8 C 1.46494 * 120.00327 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.49932 * 34.93494 * 8 7 5 10 10 C 1.53041 * 109.49991 * 154.99924 * 8 7 5 11 11 C 1.53039 * 109.53865 * 58.61492 * 10 8 7 12 12 C 1.53198 * 109.30777 * 61.36839 * 11 10 8 13 13 H 1.08998 * 109.58744 * 65.15032 * 12 11 10 14 14 C 1.52998 * 109.57981 * 185.57627 * 12 11 10 15 15 N 1.46922 * 108.77699 * 305.36111 * 12 11 10 16 16 C 1.34772 * 120.63622 * 233.58787 * 15 12 11 17 17 O 1.21288 * 119.99464 * 354.21321 * 16 15 12 18 18 C 1.50699 * 120.00633 * 174.20971 * 16 15 12 19 19 S 1.80999 * 109.47257 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99641 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00228 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99766 * 180.27835 * 20 19 18 23 23 N 1.31635 * 119.99914 * 359.72131 * 22 20 19 24 24 Si 1.86796 * 120.00135 * 179.72232 * 22 20 19 25 25 H 1.48500 * 109.47176 * 59.99511 * 24 22 20 26 26 H 1.48499 * 109.47615 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47145 * 299.99670 * 24 22 20 28 28 C 1.46928 * 118.73716 * 53.86092 * 15 12 11 29 29 H 1.07995 * 120.00025 * 359.97438 * 1 2 3 30 30 H 1.07994 * 120.00153 * 180.02562 * 1 2 3 31 31 H 1.08004 * 120.00150 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47421 * 4.99955 * 3 2 1 33 33 H 1.08995 * 109.47564 * 245.00050 * 3 2 1 34 34 H 1.09003 * 109.46963 * 60.00294 * 4 3 2 35 35 H 1.08995 * 109.47011 * 300.00514 * 4 3 2 36 36 H 0.97005 * 119.99444 * 359.97438 * 7 5 4 37 37 H 1.09007 * 109.45991 * 298.59909 * 10 8 7 38 38 H 1.09002 * 109.45133 * 178.63431 * 10 8 7 39 39 H 1.08994 * 109.49820 * 301.41686 * 11 10 8 40 40 H 1.08999 * 109.52137 * 181.33326 * 11 10 8 41 41 H 1.09012 * 109.46815 * 185.09642 * 14 12 11 42 42 H 1.08991 * 109.47576 * 305.09431 * 14 12 11 43 43 H 1.09001 * 109.47617 * 65.10004 * 14 12 11 44 44 H 1.09002 * 109.46346 * 59.99976 * 18 16 15 45 45 H 1.08998 * 109.46786 * 300.00359 * 18 16 15 46 46 H 0.96994 * 119.99595 * 180.02562 * 23 22 20 47 47 H 1.09004 * 109.58334 * 65.92625 * 28 15 12 48 48 H 1.09000 * 109.58755 * 186.35032 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.7882 2.6383 1.1821 6 8 3.5691 3.4651 0.3222 7 7 4.7052 2.8871 2.1379 8 6 5.4369 4.1562 2.1386 9 1 4.7823 4.9537 1.7871 10 6 5.9097 4.4725 3.5594 11 6 6.8024 3.3375 4.0663 12 6 8.0334 3.2189 3.1622 13 1 8.6393 4.1208 3.2497 14 6 8.8595 2.0001 3.5781 15 7 7.5856 3.0594 1.7720 16 6 8.0228 2.0272 1.0239 17 8 8.8723 1.2793 1.4599 18 6 7.4563 1.8022 -0.3543 19 16 8.2386 0.3496 -1.0986 20 6 7.4142 0.3221 -2.6556 21 1 6.6736 1.0731 -2.8878 22 6 7.7121 -0.6684 -3.5812 23 7 8.6144 -1.5840 -3.2979 24 14 6.8326 -0.7021 -5.2288 25 1 7.1001 0.5632 -5.9587 26 1 7.3266 -1.8504 -6.0303 27 1 5.3713 -0.8462 -5.0070 28 6 6.6568 4.0499 1.2110 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9352 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6213 1.4026 -0.9313 34 1 3.7400 0.5065 1.0921 35 1 2.4773 1.2355 2.1130 36 1 4.8801 2.2259 2.8259 37 1 5.0452 4.5752 4.2154 38 1 6.4747 5.4046 3.5548 39 1 6.2456 2.4007 4.0476 40 1 7.1197 3.5518 5.0869 41 1 9.7798 1.9687 2.9946 42 1 9.1036 2.0710 4.6380 43 1 8.2839 1.0922 3.3978 44 1 7.6503 2.6775 -0.9742 45 1 6.3810 1.6387 -0.2828 46 1 8.8228 -2.2759 -3.9449 47 1 7.1527 5.0182 1.1427 48 1 6.3368 3.7302 0.2193 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488661383.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:10 Heat of formation + Delta-G solvation = -51.607001 kcal Electronic energy + Delta-G solvation = -28567.657704 eV Core-core repulsion = 24749.377375 eV Total energy + Delta-G solvation = -3818.280330 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.77288 -39.45583 -37.41199 -35.43293 -34.34376 -33.23197 -32.41097 -31.74095 -30.39285 -28.96785 -27.16757 -25.45468 -24.96796 -24.27586 -22.23477 -21.03751 -20.46149 -19.84114 -18.75956 -17.59193 -17.27584 -16.45940 -16.27880 -16.03340 -15.48403 -15.29996 -14.87937 -14.78255 -14.49640 -14.27086 -14.05409 -13.68660 -13.51810 -13.34945 -13.10087 -13.00727 -12.56095 -12.54828 -12.26108 -12.17585 -12.13405 -11.89476 -11.41642 -11.21925 -11.13070 -11.11010 -11.07658 -11.01956 -11.01547 -10.78774 -10.72534 -9.91213 -9.78902 -9.39692 -9.36267 -9.03911 -8.70437 -8.36395 -8.22142 -6.48776 -6.20080 -3.90366 2.18781 2.60798 2.90399 3.04284 3.10832 3.25586 3.27880 3.30870 3.60657 4.22431 4.39826 4.49543 4.59522 4.62957 4.78273 4.85605 4.98264 5.00343 5.11859 5.15284 5.18549 5.24444 5.27106 5.29147 5.43171 5.50702 5.55992 5.56710 5.58937 5.69877 5.73371 5.78088 5.83082 5.88787 5.89213 5.93961 6.10340 6.16567 6.26760 6.34480 6.50792 6.56824 6.69791 6.83425 7.38511 7.57986 7.62330 8.16692 8.37686 8.59862 9.25804 10.87242 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007206 B = 0.004907 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3884.544596 B = 5704.238233 C = 8678.940586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.148 4.148 3 C -0.080 4.080 4 C -0.138 4.138 5 C 0.515 3.485 6 O -0.539 6.539 7 N -0.723 5.723 8 C 0.131 3.869 9 H 0.098 0.902 10 C -0.126 4.126 11 C -0.132 4.132 12 C 0.145 3.855 13 H 0.068 0.932 14 C -0.139 4.139 15 N -0.614 5.614 16 C 0.537 3.463 17 O -0.509 6.509 18 C -0.150 4.150 19 S -0.059 6.059 20 C -0.533 4.533 21 H 0.071 0.929 22 C 0.075 3.925 23 N -0.869 5.869 24 Si 0.916 3.084 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.273 1.273 28 C 0.095 3.905 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.400 0.600 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.039 0.961 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.268 0.732 47 H 0.076 0.924 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.630 10.768 16.242 22.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.166 4.166 3 C -0.117 4.117 4 C -0.178 4.178 5 C 0.302 3.698 6 O -0.416 6.416 7 N -0.376 5.376 8 C 0.026 3.974 9 H 0.116 0.884 10 C -0.164 4.164 11 C -0.171 4.171 12 C 0.042 3.958 13 H 0.086 0.914 14 C -0.196 4.196 15 N -0.351 5.351 16 C 0.325 3.675 17 O -0.384 6.384 18 C -0.300 4.300 19 S 0.167 5.833 20 C -0.682 4.682 21 H 0.089 0.911 22 C -0.134 4.134 23 N -0.504 5.504 24 Si 0.742 3.258 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.029 4.029 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.130 0.870 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.236 0.764 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.058 0.942 43 H 0.085 0.915 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.078 0.922 47 H 0.094 0.906 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.421 10.087 16.201 21.283 hybrid contribution -1.522 0.562 -1.286 2.070 sum -10.943 10.649 14.916 21.345 Atomic orbital electron populations 1.23820 0.95937 1.01651 1.02239 1.23031 0.96063 0.98660 0.98878 1.20501 0.97631 0.95219 0.98355 1.21638 0.99278 0.95842 1.01029 1.20769 0.79266 0.88988 0.80769 1.90706 1.66163 1.48028 1.36658 1.46077 1.40548 1.19811 1.31145 1.21369 0.92958 0.87158 0.95948 0.88368 1.21806 1.00038 0.99421 0.95127 1.22030 0.96742 0.98854 0.99463 1.21210 0.94401 0.99702 0.80507 0.91419 1.22209 1.01878 0.96677 0.98847 1.48105 1.47563 1.27034 1.12406 1.20262 0.81417 0.79398 0.86416 1.90735 1.30474 1.45703 1.71446 1.23579 1.04063 1.06596 0.95789 1.85291 1.53631 1.28645 1.15709 1.22818 1.27090 1.16753 1.01504 0.91081 1.24958 0.95166 0.94574 0.98672 1.70007 1.30502 1.14232 1.35677 0.86270 0.79728 0.77845 0.81981 1.19908 1.20811 1.19882 1.22249 0.89404 0.92840 0.98443 0.88741 0.88599 0.87026 0.90974 0.89736 0.88227 0.89055 0.76447 0.90989 0.90129 0.91605 0.90421 0.89926 0.94223 0.91500 0.89699 0.89791 0.92187 0.90605 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.93 14.32 29.02 0.42 -1.52 16 2 C -0.15 -1.60 9.52 -36.03 -0.34 -1.94 16 3 C -0.08 -0.94 4.95 -27.88 -0.14 -1.07 16 4 C -0.14 -1.45 5.68 -27.88 -0.16 -1.61 16 5 C 0.52 6.38 7.80 -10.99 -0.09 6.29 16 6 O -0.54 -8.53 15.64 5.55 0.09 -8.44 16 7 N -0.72 -7.28 4.92 -53.48 -0.26 -7.55 16 8 C 0.13 1.24 2.81 -67.59 -0.19 1.05 16 9 H 0.10 0.97 7.58 -51.93 -0.39 0.58 16 10 C -0.13 -0.87 5.58 -26.69 -0.15 -1.02 16 11 C -0.13 -1.04 5.21 -26.61 -0.14 -1.18 16 12 C 0.14 1.59 3.49 -67.60 -0.24 1.36 16 13 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 14 C -0.14 -1.81 7.61 37.16 0.28 -1.53 16 15 N -0.61 -8.26 2.88 -164.96 -0.48 -8.73 16 16 C 0.54 9.84 7.52 -10.99 -0.08 9.75 16 17 O -0.51 -10.74 11.43 5.55 0.06 -10.68 16 18 C -0.15 -3.10 4.51 36.01 0.16 -2.94 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 20 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.08 2.16 5.49 -17.43 -0.10 2.07 16 23 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 24 Si 0.92 21.72 29.55 -169.99 -5.02 16.70 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 28 C 0.10 1.11 5.99 -3.49 -0.02 1.08 16 29 H 0.09 0.85 7.84 -52.49 -0.41 0.44 16 30 H 0.10 0.82 8.06 -52.49 -0.42 0.39 16 31 H 0.11 1.19 8.06 -52.48 -0.42 0.76 16 32 H 0.07 0.84 7.75 -51.93 -0.40 0.44 16 33 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.40 3.47 6.77 -40.82 -0.28 3.20 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.54 6.40 -51.93 -0.33 0.21 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 1.31 6.54 -51.92 -0.34 0.97 16 42 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 1.01 6.96 -51.93 -0.36 0.65 16 44 H 0.08 1.72 7.69 -51.92 -0.40 1.32 16 45 H 0.08 1.70 7.94 -51.92 -0.41 1.29 16 46 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 47 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.10 1.34 5.93 -51.93 -0.31 1.04 16 LS Contribution 396.41 15.07 5.97 5.97 Total: -1.00 -34.39 396.41 -9.43 -43.82 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -7.83 Total: 4.42 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -0.48 Total: -6.23 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: -0.01 Total: -41.75 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.15 Total: -19.12 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.39 -9.43 -43.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488661383.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.791 kcal (2) G-P(sol) polarization free energy of solvation -34.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds