Wall clock time and date at job start Sat Apr 11 2020 06:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50698 * 120.00228 * 2 1 4 4 C 1.53008 * 109.47189 * 124.99874 * 3 2 1 5 5 C 1.50698 * 109.47189 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00230 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00244 * 180.02562 * 5 4 3 8 8 C 1.46494 * 120.00327 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.49932 * 34.93494 * 8 7 5 10 10 C 1.53041 * 109.49991 * 154.99924 * 8 7 5 11 11 C 1.53039 * 109.53865 * 58.61492 * 10 8 7 12 12 C 1.53198 * 109.30777 * 61.36839 * 11 10 8 13 13 H 1.08998 * 109.58744 * 65.15032 * 12 11 10 14 14 C 1.52998 * 109.57981 * 185.57627 * 12 11 10 15 15 N 1.46922 * 108.77699 * 305.36111 * 12 11 10 16 16 C 1.34772 * 120.63622 * 233.58787 * 15 12 11 17 17 O 1.21288 * 119.99464 * 354.21321 * 16 15 12 18 18 C 1.50699 * 120.00633 * 174.20971 * 16 15 12 19 19 S 1.80999 * 109.47257 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99641 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00228 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99766 * 180.27835 * 20 19 18 23 23 N 1.31635 * 119.99914 * 359.72131 * 22 20 19 24 24 Si 1.86796 * 120.00135 * 179.72232 * 22 20 19 25 25 H 1.48500 * 109.47176 * 59.99511 * 24 22 20 26 26 H 1.48499 * 109.47615 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47145 * 299.99670 * 24 22 20 28 28 C 1.46928 * 118.73716 * 53.86092 * 15 12 11 29 29 H 1.07995 * 120.00025 * 359.97438 * 1 2 3 30 30 H 1.07994 * 120.00153 * 180.02562 * 1 2 3 31 31 H 1.08004 * 120.00150 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47421 * 4.99955 * 3 2 1 33 33 H 1.08995 * 109.47564 * 245.00050 * 3 2 1 34 34 H 1.09003 * 109.46963 * 60.00294 * 4 3 2 35 35 H 1.08995 * 109.47011 * 300.00514 * 4 3 2 36 36 H 0.97005 * 119.99444 * 359.97438 * 7 5 4 37 37 H 1.09007 * 109.45991 * 298.59909 * 10 8 7 38 38 H 1.09002 * 109.45133 * 178.63431 * 10 8 7 39 39 H 1.08994 * 109.49820 * 301.41686 * 11 10 8 40 40 H 1.08999 * 109.52137 * 181.33326 * 11 10 8 41 41 H 1.09012 * 109.46815 * 185.09642 * 14 12 11 42 42 H 1.08991 * 109.47576 * 305.09431 * 14 12 11 43 43 H 1.09001 * 109.47617 * 65.10004 * 14 12 11 44 44 H 1.09002 * 109.46346 * 59.99976 * 18 16 15 45 45 H 1.08998 * 109.46786 * 300.00359 * 18 16 15 46 46 H 0.96994 * 119.99595 * 180.02562 * 23 22 20 47 47 H 1.09004 * 109.58334 * 65.92625 * 28 15 12 48 48 H 1.09000 * 109.58755 * 186.35032 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.7882 2.6383 1.1821 6 8 3.5691 3.4651 0.3222 7 7 4.7052 2.8871 2.1379 8 6 5.4369 4.1562 2.1386 9 1 4.7823 4.9537 1.7871 10 6 5.9097 4.4725 3.5594 11 6 6.8024 3.3375 4.0663 12 6 8.0334 3.2189 3.1622 13 1 8.6393 4.1208 3.2497 14 6 8.8595 2.0001 3.5781 15 7 7.5856 3.0594 1.7720 16 6 8.0228 2.0272 1.0239 17 8 8.8723 1.2793 1.4599 18 6 7.4563 1.8022 -0.3543 19 16 8.2386 0.3496 -1.0986 20 6 7.4142 0.3221 -2.6556 21 1 6.6736 1.0731 -2.8878 22 6 7.7121 -0.6684 -3.5812 23 7 8.6144 -1.5840 -3.2979 24 14 6.8326 -0.7021 -5.2288 25 1 7.1001 0.5632 -5.9587 26 1 7.3266 -1.8504 -6.0303 27 1 5.3713 -0.8462 -5.0070 28 6 6.6568 4.0499 1.2110 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9352 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6213 1.4026 -0.9313 34 1 3.7400 0.5065 1.0921 35 1 2.4773 1.2355 2.1130 36 1 4.8801 2.2259 2.8259 37 1 5.0452 4.5752 4.2154 38 1 6.4747 5.4046 3.5548 39 1 6.2456 2.4007 4.0476 40 1 7.1197 3.5518 5.0869 41 1 9.7798 1.9687 2.9946 42 1 9.1036 2.0710 4.6380 43 1 8.2839 1.0922 3.3978 44 1 7.6503 2.6775 -0.9742 45 1 6.3810 1.6387 -0.2828 46 1 8.8228 -2.2759 -3.9449 47 1 7.1527 5.0182 1.1427 48 1 6.3368 3.7302 0.2193 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488661383.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:09 Heat of formation + Delta-G solvation = -73.692307 kcal Electronic energy + Delta-G solvation = -28568.615395 eV Core-core repulsion = 24749.377375 eV Total energy + Delta-G solvation = -3819.238020 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.83735 -40.58575 -38.53442 -36.32304 -35.36826 -34.62075 -34.33306 -32.63859 -31.25535 -30.44539 -28.22743 -27.64855 -25.92633 -25.13045 -23.22738 -21.90433 -21.50753 -20.69260 -20.16652 -19.33593 -18.27359 -17.61898 -17.50849 -16.98648 -16.91364 -16.71963 -16.30135 -15.87686 -15.84633 -15.30850 -15.14232 -14.92919 -14.64319 -14.51583 -14.31193 -14.11982 -13.99270 -13.48408 -13.47596 -13.21999 -13.18820 -13.07366 -13.01512 -12.91798 -12.65249 -12.42355 -12.05717 -11.96346 -11.95039 -11.89293 -11.74851 -11.56976 -11.17043 -10.91411 -10.36798 -10.30714 -10.23898 -10.08450 -9.44849 -8.69305 -8.38226 -6.15613 1.22326 1.36984 1.38829 1.40825 1.51751 1.55787 1.65587 2.06106 2.23807 2.27310 2.95518 3.21745 3.60181 3.63687 3.78628 3.84999 3.91313 3.96671 4.04770 4.13435 4.15867 4.29908 4.34473 4.35497 4.41726 4.44222 4.46837 4.64068 4.66276 4.70361 4.86345 4.87541 4.89521 4.98637 5.06846 5.11637 5.15203 5.18098 5.37224 5.37382 5.41204 5.53598 5.74587 5.76731 5.87331 6.15724 6.28566 6.52591 7.03333 7.19953 7.24655 8.70594 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007206 B = 0.004907 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3884.544596 B = 5704.238233 C = 8678.940586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.167 4.167 3 C -0.076 4.076 4 C -0.134 4.134 5 C 0.510 3.490 6 O -0.578 6.578 7 N -0.714 5.714 8 C 0.133 3.867 9 H 0.099 0.901 10 C -0.114 4.114 11 C -0.125 4.125 12 C 0.140 3.860 13 H 0.090 0.910 14 C -0.133 4.133 15 N -0.598 5.598 16 C 0.536 3.464 17 O -0.543 6.543 18 C -0.122 4.122 19 S -0.131 6.131 20 C -0.549 4.549 21 H 0.071 0.929 22 C 0.022 3.978 23 N -0.907 5.907 24 Si 0.990 3.010 25 H -0.265 1.265 26 H -0.272 1.272 27 H -0.264 1.264 28 C 0.089 3.911 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.409 0.591 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.061 0.939 40 H 0.107 0.893 41 H 0.047 0.953 42 H 0.070 0.930 43 H 0.038 0.962 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.272 0.728 47 H 0.102 0.898 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.383 12.567 18.042 25.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.185 4.185 3 C -0.113 4.113 4 C -0.174 4.174 5 C 0.298 3.702 6 O -0.458 6.458 7 N -0.366 5.366 8 C 0.027 3.973 9 H 0.117 0.883 10 C -0.152 4.152 11 C -0.163 4.163 12 C 0.038 3.962 13 H 0.107 0.893 14 C -0.190 4.190 15 N -0.333 5.333 16 C 0.323 3.677 17 O -0.421 6.421 18 C -0.274 4.274 19 S 0.096 5.904 20 C -0.697 4.697 21 H 0.089 0.911 22 C -0.184 4.184 23 N -0.543 5.543 24 Si 0.811 3.189 25 H -0.190 1.190 26 H -0.197 1.197 27 H -0.189 1.189 28 C -0.034 4.034 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.140 0.860 36 H 0.246 0.754 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.080 0.920 40 H 0.125 0.875 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.106 0.894 45 H 0.103 0.897 46 H 0.082 0.918 47 H 0.120 0.880 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.180 11.917 18.058 24.354 hybrid contribution -0.984 0.081 -1.750 2.009 sum -12.164 11.999 16.308 23.620 Atomic orbital electron populations 1.24021 0.95491 1.02733 0.99985 1.22979 0.96578 0.97989 1.00939 1.20407 0.97631 0.95920 0.97386 1.21647 0.99083 0.94661 1.01981 1.21090 0.79514 0.89084 0.80507 1.90686 1.67550 1.49369 1.38218 1.46074 1.39629 1.20364 1.30558 1.21461 0.91648 0.86714 0.97465 0.88310 1.21792 1.00768 0.99670 0.92979 1.22002 0.95056 0.99246 0.99985 1.21523 0.96208 0.99399 0.79034 0.89258 1.22035 1.00188 0.96566 1.00182 1.48044 1.46656 1.25416 1.13161 1.19844 0.81425 0.80640 0.85765 1.90751 1.32076 1.47468 1.71820 1.23366 1.03397 1.03184 0.97430 1.85319 1.55404 1.33054 1.16594 1.23087 1.27280 1.17170 1.02166 0.91124 1.25995 0.95768 0.93837 1.02775 1.70148 1.31964 1.14968 1.37239 0.85136 0.78634 0.78381 0.76713 1.18963 1.19715 1.18900 1.22454 0.90303 0.93059 0.97633 0.87989 0.87131 0.87220 0.91002 0.93012 0.88754 0.85966 0.75421 0.88872 0.88101 0.92038 0.87494 0.93423 0.91101 0.94238 0.89431 0.89659 0.91846 0.87954 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.33 14.32 67.79 0.97 -2.36 16 2 C -0.17 -3.55 9.52 25.65 0.24 -3.30 16 3 C -0.08 -1.82 4.95 29.85 0.15 -1.67 16 4 C -0.13 -2.78 5.68 29.85 0.17 -2.61 16 5 C 0.51 12.45 7.80 87.66 0.68 13.13 16 6 O -0.58 -18.53 15.64 -3.04 -0.05 -18.58 16 7 N -0.71 -13.26 4.92 -441.49 -2.17 -15.43 16 8 C 0.13 2.17 2.81 45.22 0.13 2.30 16 9 H 0.10 1.72 7.58 -2.39 -0.02 1.70 16 10 C -0.11 -1.04 5.58 30.62 0.17 -0.87 16 11 C -0.12 -1.43 5.21 30.67 0.16 -1.27 16 12 C 0.14 2.71 3.49 44.98 0.16 2.87 16 13 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 14 C -0.13 -3.34 7.61 71.98 0.55 -2.79 16 15 N -0.60 -15.45 2.88 -794.19 -2.29 -17.74 16 16 C 0.54 20.13 7.52 87.66 0.66 20.79 16 17 O -0.54 -23.93 11.43 -3.05 -0.03 -23.97 16 18 C -0.12 -5.28 4.51 71.24 0.32 -4.96 16 19 S -0.13 -7.42 20.57 -56.49 -1.16 -8.58 16 20 C -0.55 -32.59 9.50 67.95 0.65 -31.94 16 21 H 0.07 4.05 7.80 -2.91 -0.02 4.02 16 22 C 0.02 1.26 5.49 84.86 0.47 1.73 16 23 N -0.91 -56.16 13.22 21.65 0.29 -55.88 16 24 Si 0.99 45.05 29.55 68.60 2.03 47.08 16 25 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 28 C 0.09 1.94 5.99 86.51 0.52 2.45 16 29 H 0.10 1.67 7.84 -2.91 -0.02 1.64 16 30 H 0.11 1.65 8.06 -2.91 -0.02 1.63 16 31 H 0.11 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.07 1.69 7.75 -2.39 -0.02 1.67 16 33 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 34 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.41 6.25 6.77 -92.70 -0.63 5.62 16 37 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 38 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.06 0.80 6.40 -2.39 -0.02 0.78 16 40 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.05 1.54 6.54 -2.38 -0.02 1.52 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.04 1.20 6.96 -2.39 -0.02 1.18 16 44 H 0.09 3.68 7.69 -2.39 -0.02 3.66 16 45 H 0.09 3.61 7.94 -2.40 -0.02 3.59 16 46 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 47 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 48 H 0.07 1.87 5.93 -2.39 -0.01 1.85 16 Total: -1.00 -79.66 396.41 2.91 -76.74 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.32 Total: 24.87 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 5.99 Total: -8.52 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -4.18 Total: -89.05 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.08 Total: -42.55 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: -7.42 SS G_CDS: -1.16 Total: -8.58 kcal Total: -79.66 2.91 -76.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488661383.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.051 kcal (2) G-P(sol) polarization free energy of solvation -79.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds