Wall clock time and date at job start Sat Apr 11 2020 06:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 115.55920 * 2 1 4 4 C 1.53076 * 117.51294 * 214.29602 * 2 1 3 5 5 C 1.52998 * 117.49836 * 145.68858 * 2 1 3 6 6 H 1.08999 * 117.49511 * 215.00272 * 5 2 1 7 7 C 1.50695 * 117.50012 * 359.97438 * 5 2 1 8 8 O 1.21284 * 120.00372 * 359.91530 * 7 5 2 9 9 N 1.34782 * 119.99986 * 179.91490 * 7 5 2 10 10 C 1.46495 * 119.99963 * 180.02562 * 9 7 5 11 11 C 1.53008 * 109.47169 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47321 * 185.08111 * 11 10 9 13 13 C 1.53010 * 115.54671 * 295.64848 * 12 11 10 14 14 N 1.46491 * 109.46869 * 297.20961 * 13 12 11 15 15 C 1.34784 * 119.99997 * 176.87577 * 14 13 12 16 16 O 1.21282 * 119.99809 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99984 * 180.02562 * 15 14 13 18 18 S 1.81005 * 109.46789 * 179.97438 * 17 15 14 19 19 C 1.76207 * 99.99783 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99619 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99774 * 179.97438 * 19 18 17 22 22 N 1.31636 * 120.00139 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99737 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46998 * 60.00593 * 23 21 19 25 25 H 1.48508 * 109.46813 * 180.02562 * 23 21 19 26 26 H 1.48492 * 109.47260 * 300.00096 * 23 21 19 27 27 C 1.52996 * 117.50077 * 149.98022 * 12 11 10 28 28 C 1.52995 * 117.50147 * 81.31525 * 12 11 10 29 29 H 1.09001 * 109.47079 * 274.30587 * 1 2 3 30 30 H 1.08997 * 109.47087 * 34.31452 * 1 2 3 31 31 H 1.09010 * 109.46896 * 154.31207 * 1 2 3 32 32 H 1.09005 * 117.48851 * 145.03252 * 4 2 1 33 33 H 1.08995 * 117.51521 * 0.02562 * 4 2 1 34 34 H 0.96999 * 119.99662 * 359.97438 * 9 7 5 35 35 H 1.09004 * 109.47314 * 299.99709 * 10 9 7 36 36 H 1.08999 * 109.47451 * 59.99649 * 10 9 7 37 37 H 1.08997 * 109.46826 * 305.08315 * 11 10 9 38 38 H 1.08998 * 109.46978 * 65.07978 * 11 10 9 39 39 H 1.08999 * 109.47062 * 57.21432 * 13 12 11 40 40 H 1.08999 * 109.46771 * 177.21381 * 13 12 11 41 41 H 0.97004 * 120.00748 * 356.87261 * 14 13 12 42 42 H 1.08997 * 109.46871 * 299.99485 * 17 15 14 43 43 H 1.08996 * 109.47087 * 59.99833 * 17 15 14 44 44 H 0.96994 * 119.99950 * 179.97438 * 22 21 19 45 45 H 1.09000 * 117.49836 * 359.97438 * 27 12 11 46 46 H 1.08997 * 117.50161 * 145.02186 * 27 12 11 47 47 H 1.09000 * 117.50329 * 214.98275 * 28 12 11 48 48 H 1.09003 * 117.49574 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1216 -0.7650 5 6 2.2365 -1.1210 0.7650 6 1 3.1714 -0.8750 1.2686 7 6 1.3721 -2.1402 1.4613 8 8 0.1639 -2.0518 1.4034 9 7 1.9417 -3.1502 2.1485 10 6 1.1014 -4.1413 2.8249 11 6 1.9905 -5.1714 3.5246 12 6 1.1173 -6.2758 4.1236 13 6 0.1641 -5.8331 5.2356 14 7 0.9398 -5.3319 6.3728 15 6 0.3067 -4.8261 7.4498 16 8 -0.9051 -4.7855 7.4773 17 6 1.1047 -4.3100 8.6194 18 16 -0.0231 -3.7006 9.8973 19 6 1.1431 -3.1744 11.1089 20 1 2.2013 -3.2834 10.9229 21 6 0.7016 -2.6191 12.3018 22 7 -0.5883 -2.4859 12.5283 23 14 1.9378 -2.0620 13.5867 24 1 2.8163 -1.0145 13.0068 25 1 1.2162 -1.5091 14.7610 26 1 2.7636 -3.2199 14.0139 27 6 1.7233 -7.6767 4.2287 28 6 0.6411 -7.3868 3.1857 29 1 -0.3633 0.0772 1.0248 30 1 -0.3633 0.8488 -0.5793 31 1 -0.3633 -0.9262 -0.4455 32 1 3.1724 -0.8756 -1.2680 33 1 1.6125 -1.8592 -1.2686 34 1 2.9080 -3.2211 2.1945 35 1 0.4732 -3.6423 3.5628 36 1 0.4709 -4.6443 2.0917 37 1 2.6810 -5.6060 2.8018 38 1 2.5555 -4.6839 4.3190 39 1 -0.4867 -5.0423 4.8628 40 1 -0.4411 -6.6817 5.5545 41 1 1.9091 -5.3641 6.3508 42 1 1.7147 -5.1161 9.0270 43 1 1.7509 -3.4972 8.2880 44 1 -0.8968 -2.0981 13.3621 45 1 2.7440 -7.8117 3.8707 46 1 1.4427 -8.2832 5.0897 47 1 -0.3511 -7.8027 3.3610 48 1 0.9495 -7.3307 2.1417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489042377.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:17 Heat of formation + Delta-G solvation = -37.629991 kcal Electronic energy + Delta-G solvation = -26363.650858 eV Core-core repulsion = 22545.976617 eV Total energy + Delta-G solvation = -3817.674241 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.43956 -39.64133 -38.32621 -37.03363 -35.09387 -33.87641 -32.41959 -30.85272 -29.69462 -28.69880 -26.36260 -25.43251 -25.16013 -23.23706 -22.49056 -21.38726 -20.46520 -20.29483 -19.25285 -17.81759 -17.42003 -16.50012 -16.33887 -16.13027 -15.72692 -15.60542 -15.20057 -14.85808 -14.79452 -14.45582 -14.03224 -13.86524 -13.83960 -13.28615 -13.11564 -13.04975 -12.85024 -12.57890 -12.52920 -12.47510 -11.97953 -11.83823 -11.81134 -11.77015 -11.44351 -11.03945 -11.03598 -10.78472 -10.62597 -10.58979 -10.43217 -10.25645 -9.81540 -9.77721 -9.36253 -9.32914 -9.05613 -8.85198 -8.22637 -6.48894 -6.20577 -3.91232 2.24619 2.78185 2.98724 3.12114 3.23664 3.25005 3.29044 3.42814 3.44590 3.81621 4.21163 4.21952 4.27058 4.34486 4.39970 4.46069 4.52783 4.57172 4.75477 4.91183 5.01246 5.04445 5.11845 5.14271 5.22716 5.28611 5.33030 5.43587 5.47094 5.55406 5.58358 5.58482 5.70548 5.73366 5.75340 5.77001 5.80906 5.86499 5.90585 5.92440 6.12631 6.14148 6.30637 6.62414 7.20354 7.59765 7.73034 7.99286 8.35704 8.63514 9.24357 10.86789 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009766 B = 0.002247 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.502284 B =12459.761942 C =14358.606737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.118 4.118 3 H 0.111 0.889 4 C -0.152 4.152 5 C -0.195 4.195 6 H 0.122 0.878 7 C 0.541 3.459 8 O -0.530 6.530 9 N -0.729 5.729 10 C 0.120 3.880 11 C -0.091 4.091 12 C -0.139 4.139 13 C 0.158 3.842 14 N -0.735 5.735 15 C 0.531 3.469 16 O -0.517 6.517 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.166 4.166 28 C -0.162 4.162 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.399 0.601 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.269 0.731 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.074 -4.500 -27.597 30.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.136 4.136 3 H 0.129 0.871 4 C -0.190 4.190 5 C -0.217 4.217 6 H 0.140 0.860 7 C 0.327 3.673 8 O -0.406 6.406 9 N -0.380 5.380 10 C -0.003 4.003 11 C -0.129 4.129 12 C -0.140 4.140 13 C 0.034 3.966 14 N -0.390 5.390 15 C 0.317 3.683 16 O -0.391 6.391 17 C -0.303 4.303 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.203 4.203 28 C -0.199 4.199 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.233 0.767 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.231 0.769 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.115 0.885 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.980 -4.317 -27.449 28.910 hybrid contribution 3.346 0.182 0.938 3.480 sum 11.326 -4.135 -26.511 29.124 Atomic orbital electron populations 1.21380 0.91332 1.01429 1.02878 1.22400 0.96745 0.93544 1.00942 0.87076 1.23092 1.03093 1.02096 0.90689 1.22292 1.02209 1.01414 0.95742 0.85961 1.19680 0.88191 0.81104 0.78330 1.90738 1.14527 1.74452 1.60922 1.45963 1.10361 1.27972 1.53742 1.21344 0.93422 0.89073 0.96453 1.21264 0.97064 0.94810 0.99733 1.21530 1.01954 0.90255 1.00308 1.20743 0.92381 0.99376 0.84123 1.45938 1.10050 1.65370 1.17616 1.20310 0.88463 0.76704 0.82847 1.90711 1.14007 1.54216 1.80197 1.23521 1.04161 1.03706 0.98937 1.85424 1.08511 1.78630 1.10751 1.22823 0.94174 1.47569 1.03854 0.91013 1.24994 0.95829 0.95151 0.97628 1.70009 1.13055 1.41903 1.25294 0.86226 0.80390 0.78953 0.79935 1.19959 1.20806 1.19954 1.23095 0.98448 0.97004 1.01708 1.23034 0.99819 1.01019 0.96050 0.91159 0.93184 0.91808 0.87871 0.88278 0.76694 0.90895 0.91287 0.90938 0.90542 0.90886 0.91524 0.76896 0.89285 0.89336 0.92124 0.88540 0.88226 0.88227 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 8.43 37.16 0.31 -0.77 16 2 C -0.12 -0.90 6.41 -90.58 -0.58 -1.48 16 3 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 4 C -0.15 -0.94 9.88 -26.69 -0.26 -1.21 16 5 C -0.20 -1.45 6.18 -91.78 -0.57 -2.02 16 6 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 7 C 0.54 5.55 7.59 -10.99 -0.08 5.47 16 8 O -0.53 -7.46 13.10 5.55 0.07 -7.39 16 9 N -0.73 -5.78 5.56 -60.29 -0.33 -6.12 16 10 C 0.12 1.06 5.39 -4.04 -0.02 1.04 16 11 C -0.09 -0.60 5.10 -26.73 -0.14 -0.74 16 12 C -0.14 -1.08 1.57 -154.51 -0.24 -1.32 16 13 C 0.16 1.82 5.30 -4.04 -0.02 1.79 16 14 N -0.74 -9.57 5.40 -60.29 -0.33 -9.90 16 15 C 0.53 9.92 7.85 -10.98 -0.09 9.84 16 16 O -0.52 -11.93 15.86 5.56 0.09 -11.84 16 17 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 23 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 C -0.17 -1.11 9.95 -26.69 -0.27 -1.37 16 28 C -0.16 -1.09 9.95 -26.69 -0.27 -1.36 16 29 H 0.07 0.82 7.25 -51.93 -0.38 0.44 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.68 7.02 -51.92 -0.36 0.32 16 32 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.68 8.05 -51.93 -0.42 0.26 16 34 H 0.40 2.00 8.47 -40.82 -0.35 1.66 16 35 H 0.07 0.85 7.26 -51.93 -0.38 0.48 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 38 H 0.08 0.50 7.53 -51.93 -0.39 0.11 16 39 H 0.07 0.96 7.17 -51.93 -0.37 0.59 16 40 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 41 H 0.40 4.04 7.91 -40.82 -0.32 3.71 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 411.90 15.07 6.21 6.21 Total: -1.00 -36.54 411.90 -10.60 -47.14 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.00 Total: 2.93 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.80 Total: -8.02 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.07 Total: -41.62 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: 0.16 Total: -19.23 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -36.54 -10.60 -47.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489042377.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.512 kcal (2) G-P(sol) polarization free energy of solvation -36.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds