Wall clock time and date at job start Sat Apr 11 2020 06:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 115.55920 * 2 1 4 4 C 1.53076 * 117.51294 * 214.29602 * 2 1 3 5 5 C 1.52998 * 117.49836 * 145.68858 * 2 1 3 6 6 H 1.08999 * 117.49511 * 215.00272 * 5 2 1 7 7 C 1.50695 * 117.50012 * 359.97438 * 5 2 1 8 8 O 1.21284 * 120.00372 * 359.91530 * 7 5 2 9 9 N 1.34782 * 119.99986 * 179.91490 * 7 5 2 10 10 C 1.46495 * 119.99963 * 180.02562 * 9 7 5 11 11 C 1.53008 * 109.47169 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47321 * 185.08111 * 11 10 9 13 13 C 1.53010 * 115.54671 * 295.64848 * 12 11 10 14 14 N 1.46491 * 109.46869 * 297.20961 * 13 12 11 15 15 C 1.34784 * 119.99997 * 176.87577 * 14 13 12 16 16 O 1.21282 * 119.99809 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99984 * 180.02562 * 15 14 13 18 18 S 1.81005 * 109.46789 * 179.97438 * 17 15 14 19 19 C 1.76207 * 99.99783 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99619 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99774 * 179.97438 * 19 18 17 22 22 N 1.31636 * 120.00139 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99737 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46998 * 60.00593 * 23 21 19 25 25 H 1.48508 * 109.46813 * 180.02562 * 23 21 19 26 26 H 1.48492 * 109.47260 * 300.00096 * 23 21 19 27 27 C 1.52996 * 117.50077 * 149.98022 * 12 11 10 28 28 C 1.52995 * 117.50147 * 81.31525 * 12 11 10 29 29 H 1.09001 * 109.47079 * 274.30587 * 1 2 3 30 30 H 1.08997 * 109.47087 * 34.31452 * 1 2 3 31 31 H 1.09010 * 109.46896 * 154.31207 * 1 2 3 32 32 H 1.09005 * 117.48851 * 145.03252 * 4 2 1 33 33 H 1.08995 * 117.51521 * 0.02562 * 4 2 1 34 34 H 0.96999 * 119.99662 * 359.97438 * 9 7 5 35 35 H 1.09004 * 109.47314 * 299.99709 * 10 9 7 36 36 H 1.08999 * 109.47451 * 59.99649 * 10 9 7 37 37 H 1.08997 * 109.46826 * 305.08315 * 11 10 9 38 38 H 1.08998 * 109.46978 * 65.07978 * 11 10 9 39 39 H 1.08999 * 109.47062 * 57.21432 * 13 12 11 40 40 H 1.08999 * 109.46771 * 177.21381 * 13 12 11 41 41 H 0.97004 * 120.00748 * 356.87261 * 14 13 12 42 42 H 1.08997 * 109.46871 * 299.99485 * 17 15 14 43 43 H 1.08996 * 109.47087 * 59.99833 * 17 15 14 44 44 H 0.96994 * 119.99950 * 179.97438 * 22 21 19 45 45 H 1.09000 * 117.49836 * 359.97438 * 27 12 11 46 46 H 1.08997 * 117.50161 * 145.02186 * 27 12 11 47 47 H 1.09000 * 117.50329 * 214.98275 * 28 12 11 48 48 H 1.09003 * 117.49574 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1216 -0.7650 5 6 2.2365 -1.1210 0.7650 6 1 3.1714 -0.8750 1.2686 7 6 1.3721 -2.1402 1.4613 8 8 0.1639 -2.0518 1.4034 9 7 1.9417 -3.1502 2.1485 10 6 1.1014 -4.1413 2.8249 11 6 1.9905 -5.1714 3.5246 12 6 1.1173 -6.2758 4.1236 13 6 0.1641 -5.8331 5.2356 14 7 0.9398 -5.3319 6.3728 15 6 0.3067 -4.8261 7.4498 16 8 -0.9051 -4.7855 7.4773 17 6 1.1047 -4.3100 8.6194 18 16 -0.0231 -3.7006 9.8973 19 6 1.1431 -3.1744 11.1089 20 1 2.2013 -3.2834 10.9229 21 6 0.7016 -2.6191 12.3018 22 7 -0.5883 -2.4859 12.5283 23 14 1.9378 -2.0620 13.5867 24 1 2.8163 -1.0145 13.0068 25 1 1.2162 -1.5091 14.7610 26 1 2.7636 -3.2199 14.0139 27 6 1.7233 -7.6767 4.2287 28 6 0.6411 -7.3868 3.1857 29 1 -0.3633 0.0772 1.0248 30 1 -0.3633 0.8488 -0.5793 31 1 -0.3633 -0.9262 -0.4455 32 1 3.1724 -0.8756 -1.2680 33 1 1.6125 -1.8592 -1.2686 34 1 2.9080 -3.2211 2.1945 35 1 0.4732 -3.6423 3.5628 36 1 0.4709 -4.6443 2.0917 37 1 2.6810 -5.6060 2.8018 38 1 2.5555 -4.6839 4.3190 39 1 -0.4867 -5.0423 4.8628 40 1 -0.4411 -6.6817 5.5545 41 1 1.9091 -5.3641 6.3508 42 1 1.7147 -5.1161 9.0270 43 1 1.7509 -3.4972 8.2880 44 1 -0.8968 -2.0981 13.3621 45 1 2.7440 -7.8117 3.8707 46 1 1.4427 -8.2832 5.0897 47 1 -0.3511 -7.8027 3.3610 48 1 0.9495 -7.3307 2.1417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489042377.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:16 Heat of formation + Delta-G solvation = -63.125686 kcal Electronic energy + Delta-G solvation = -26364.756434 eV Core-core repulsion = 22545.976617 eV Total energy + Delta-G solvation = -3818.779817 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.20644 -40.79295 -39.34606 -37.67731 -35.90196 -35.15281 -34.58575 -31.57910 -31.17258 -29.40506 -27.84069 -27.22486 -25.86479 -23.86217 -23.06510 -22.00423 -21.73306 -21.18676 -20.19375 -19.59961 -18.13750 -17.82784 -17.32450 -17.05952 -16.88337 -16.64029 -16.55104 -16.10416 -15.98828 -15.62729 -15.32592 -14.73228 -14.68045 -14.50148 -14.42087 -14.16780 -14.00582 -13.57566 -13.37221 -13.19622 -13.17588 -13.11678 -12.86396 -12.69523 -12.59312 -12.38343 -12.32997 -12.15369 -11.76016 -11.28309 -11.21008 -11.13205 -11.07803 -11.04509 -10.73457 -10.55575 -10.28352 -10.15993 -10.05698 -8.68023 -8.34701 -6.13514 1.25883 1.43856 1.46312 1.50348 1.55932 1.59997 2.10966 2.22878 2.27746 2.84510 2.87901 2.99231 3.32418 3.59645 3.64503 3.70484 3.77928 3.91798 3.93394 3.95374 4.00399 4.18634 4.25483 4.28263 4.31647 4.46796 4.49014 4.56549 4.65719 4.75011 4.79932 4.83917 4.89098 4.94433 5.00097 5.04222 5.07684 5.09762 5.16966 5.18378 5.29651 5.39888 5.41010 5.42278 5.54798 6.19236 6.50539 6.56707 7.06089 7.23812 7.28634 8.74351 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009766 B = 0.002247 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.502284 B =12459.761942 C =14358.606737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.134 4.134 3 H 0.132 0.868 4 C -0.132 4.132 5 C -0.198 4.198 6 H 0.150 0.850 7 C 0.529 3.471 8 O -0.580 6.580 9 N -0.715 5.715 10 C 0.124 3.876 11 C -0.079 4.079 12 C -0.146 4.146 13 C 0.158 3.842 14 N -0.705 5.705 15 C 0.531 3.469 16 O -0.570 6.570 17 C -0.127 4.127 18 S -0.156 6.156 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.261 1.261 25 H -0.280 1.280 26 H -0.260 1.260 27 C -0.150 4.150 28 C -0.159 4.159 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.134 0.866 33 H 0.088 0.912 34 H 0.417 0.583 35 H 0.036 0.964 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.416 0.584 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.271 0.729 45 H 0.120 0.880 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.686 -5.075 -28.955 33.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.152 4.152 3 H 0.150 0.850 4 C -0.169 4.169 5 C -0.219 4.219 6 H 0.168 0.832 7 C 0.316 3.684 8 O -0.460 6.460 9 N -0.367 5.367 10 C 0.000 4.000 11 C -0.116 4.116 12 C -0.147 4.147 13 C 0.034 3.966 14 N -0.359 5.359 15 C 0.317 3.683 16 O -0.448 6.448 17 C -0.278 4.278 18 S 0.071 5.929 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.193 4.193 22 N -0.549 5.549 23 Si 0.821 3.179 24 H -0.186 1.186 25 H -0.205 1.205 26 H -0.185 1.185 27 C -0.187 4.187 28 C -0.196 4.196 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.152 0.848 33 H 0.106 0.894 34 H 0.254 0.746 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.121 0.879 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.254 0.746 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.080 0.920 45 H 0.139 0.861 46 H 0.110 0.890 47 H 0.110 0.890 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.685 -4.929 -28.847 31.896 hybrid contribution 1.866 0.286 1.229 2.252 sum 14.551 -4.643 -27.617 31.559 Atomic orbital electron populations 1.21272 0.93462 1.00976 1.00954 1.22493 0.95288 0.95035 1.02394 0.85015 1.23164 1.03680 1.00402 0.89676 1.22380 1.02481 1.00376 0.96649 0.83188 1.20339 0.87994 0.81801 0.78216 1.90726 1.16793 1.75690 1.62743 1.45858 1.11227 1.27040 1.52561 1.21215 0.93821 0.89428 0.95533 1.21215 0.96531 0.93625 1.00250 1.21368 1.02242 0.91422 0.99697 1.20784 0.93129 0.98157 0.84513 1.45647 1.11043 1.62995 1.16205 1.20129 0.87635 0.76842 0.83704 1.90700 1.16134 1.56707 1.81280 1.23351 1.02578 1.04838 0.97048 1.85652 1.13112 1.79748 1.14412 1.23168 0.94502 1.47537 1.04107 0.89753 1.26170 0.98010 0.94969 1.00185 1.70189 1.15579 1.43019 1.26093 0.84983 0.77497 0.78934 0.76449 1.18591 1.20495 1.18498 1.23166 0.99521 0.94825 1.01210 1.23125 0.99871 0.99702 0.96911 0.94141 0.91863 0.93679 0.84814 0.89354 0.74590 0.94581 0.92218 0.87854 0.89965 0.93131 0.92501 0.74643 0.86988 0.87244 0.92017 0.86145 0.88963 0.88964 0.86722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.20 8.43 71.98 0.61 -1.60 16 2 C -0.13 -1.88 6.41 -10.77 -0.07 -1.95 16 3 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 4 C -0.13 -1.33 9.88 30.62 0.30 -1.03 16 5 C -0.20 -2.59 6.18 -11.54 -0.07 -2.66 16 6 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 7 C 0.53 10.78 7.59 87.65 0.67 11.45 16 8 O -0.58 -17.39 13.10 -3.04 -0.04 -17.43 16 9 N -0.71 -10.44 5.56 -463.05 -2.57 -13.02 16 10 C 0.12 2.14 5.39 86.38 0.47 2.61 16 11 C -0.08 -0.82 5.10 30.60 0.16 -0.67 16 12 C -0.15 -1.99 1.57 -52.18 -0.08 -2.07 16 13 C 0.16 3.64 5.30 86.38 0.46 4.10 16 14 N -0.70 -17.70 5.40 -463.05 -2.50 -20.20 16 15 C 0.53 19.99 7.85 87.66 0.69 20.68 16 16 O -0.57 -27.47 15.86 -3.04 -0.05 -27.52 16 17 C -0.13 -5.05 6.16 71.24 0.44 -4.61 16 18 S -0.16 -8.83 20.57 -56.49 -1.16 -9.99 16 19 C -0.55 -31.30 9.50 67.95 0.65 -30.66 16 20 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 21 C 0.01 0.65 5.49 84.86 0.47 1.11 16 22 N -0.91 -56.75 13.22 21.65 0.29 -56.46 16 23 Si 1.00 43.68 29.55 68.60 2.03 45.70 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 25 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 27 C -0.15 -1.53 9.95 30.62 0.30 -1.22 16 28 C -0.16 -1.80 9.95 30.62 0.30 -1.49 16 29 H 0.04 1.03 7.25 -2.39 -0.02 1.01 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.04 1.04 7.02 -2.38 -0.02 1.03 16 32 H 0.13 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.09 1.10 8.05 -2.39 -0.02 1.08 16 34 H 0.42 2.99 8.47 -92.71 -0.79 2.20 16 35 H 0.04 0.90 7.26 -2.39 -0.02 0.88 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 0.54 8.10 -2.39 -0.02 0.52 16 38 H 0.08 0.80 7.53 -2.39 -0.02 0.78 16 39 H 0.05 1.42 7.17 -2.39 -0.02 1.41 16 40 H 0.06 1.44 8.11 -2.39 -0.02 1.42 16 41 H 0.42 7.35 7.91 -92.71 -0.73 6.62 16 42 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 43 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 44 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 45 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -85.90 411.90 0.72 -85.18 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -0.55 Total: 21.75 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 5.28 Total: -8.02 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -4.79 Total: -89.67 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -0.09 Total: -44.94 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.16 Total: -9.99 kcal Total: -85.90 0.72 -85.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489042377.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.050 kcal (2) G-P(sol) polarization free energy of solvation -85.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds