Wall clock time and date at job start Sat Apr 11 2020 06:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 115.54880 * 2 1 4 4 C 1.53002 * 117.51740 * 145.68838 * 2 1 3 5 5 C 1.52992 * 117.50304 * 214.31934 * 2 1 3 6 6 H 1.09002 * 117.50246 * 144.97151 * 5 2 1 7 7 C 1.50710 * 117.49948 * 359.97438 * 5 2 1 8 8 O 1.21280 * 119.99289 * 359.97438 * 7 5 2 9 9 N 1.34769 * 119.99992 * 180.27278 * 7 5 2 10 10 C 1.46499 * 120.00035 * 179.72001 * 9 7 5 11 11 C 1.52996 * 109.47452 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47138 * 185.08582 * 11 10 9 13 13 C 1.52999 * 115.54968 * 295.64399 * 12 11 10 14 14 N 1.46507 * 109.47249 * 297.21261 * 13 12 11 15 15 C 1.34774 * 119.99831 * 176.86984 * 14 13 12 16 16 O 1.21282 * 120.00075 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99839 * 180.02562 * 15 14 13 18 18 S 1.80999 * 109.47338 * 179.97438 * 17 15 14 19 19 C 1.76199 * 99.99941 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00459 * 359.97438 * 19 18 17 21 21 C 1.38800 * 119.99936 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00273 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99837 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46961 * 90.00185 * 23 21 19 25 25 H 1.48506 * 109.47006 * 210.00223 * 23 21 19 26 26 H 1.48499 * 109.47347 * 330.00467 * 23 21 19 27 27 C 1.52999 * 117.50181 * 149.97769 * 12 11 10 28 28 C 1.53002 * 117.50057 * 81.31627 * 12 11 10 29 29 H 1.09000 * 109.46738 * 205.67988 * 1 2 3 30 30 H 1.08993 * 109.47269 * 325.67745 * 1 2 3 31 31 H 1.08999 * 109.46663 * 85.68311 * 1 2 3 32 32 H 1.08998 * 117.50123 * 359.97438 * 4 2 1 33 33 H 1.09003 * 117.49835 * 214.97021 * 4 2 1 34 34 H 0.97000 * 120.00315 * 359.73033 * 9 7 5 35 35 H 1.08999 * 109.47106 * 300.00449 * 10 9 7 36 36 H 1.09000 * 109.47046 * 60.00238 * 10 9 7 37 37 H 1.09002 * 109.46966 * 305.08368 * 11 10 9 38 38 H 1.09002 * 109.46954 * 65.08122 * 11 10 9 39 39 H 1.09003 * 109.47414 * 57.21218 * 13 12 11 40 40 H 1.09002 * 109.46965 * 177.21267 * 13 12 11 41 41 H 0.96994 * 119.99525 * 356.86885 * 14 13 12 42 42 H 1.09003 * 109.47252 * 300.00271 * 17 15 14 43 43 H 1.09011 * 109.47121 * 59.99806 * 17 15 14 44 44 H 0.97000 * 119.99986 * 179.97438 * 22 21 19 45 45 H 1.09005 * 117.49555 * 359.97438 * 27 12 11 46 46 H 1.09001 * 117.50233 * 145.01499 * 27 12 11 47 47 H 1.09005 * 117.49658 * 214.97987 * 28 12 11 48 48 H 1.08993 * 117.50156 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1208 0.7649 5 6 2.2365 -1.1208 -0.7651 6 1 3.1712 -0.8747 -1.2690 7 6 1.3721 -2.1408 -1.4607 8 8 0.1640 -2.0539 -1.4002 9 7 1.9417 -3.1527 -2.1447 10 6 1.1015 -4.1476 -2.8157 11 6 1.9906 -5.1794 -3.5127 12 6 1.1176 -6.1442 -4.3176 13 6 0.1632 -7.0128 -3.4956 14 7 0.9376 -7.8841 -2.6082 15 6 0.3033 -8.6969 -1.7402 16 8 -0.9086 -8.7066 -1.6933 17 6 1.0998 -9.5928 -0.8270 18 16 -0.0294 -10.5535 0.2112 19 6 1.1354 -11.4838 1.1506 20 1 2.1939 -11.3522 0.9814 21 6 0.6926 -12.3866 2.1074 22 7 1.5627 -13.0820 2.8088 23 14 -1.1383 -12.6147 2.3996 24 1 -1.6518 -13.6867 1.5095 25 1 -1.3699 -12.9945 3.8165 26 1 -1.8487 -11.3444 2.1052 27 6 1.7243 -6.7608 -5.5795 28 6 0.6428 -5.6839 -5.6973 29 1 -0.3633 -0.9262 0.4453 30 1 -0.3633 0.8487 0.5794 31 1 -0.3632 0.0774 -1.0248 32 1 1.6120 -1.8582 1.2687 33 1 3.1721 -0.8747 1.2679 34 1 2.9081 -3.2223 -2.1926 35 1 0.4730 -4.6484 -2.0793 36 1 0.4714 -3.6523 -3.5544 37 1 2.6820 -4.6693 -4.1834 38 1 2.5546 -5.7372 -2.7651 39 1 -0.4878 -6.3734 -2.8994 40 1 -0.4418 -7.6228 -4.1664 41 1 1.9068 -7.8761 -2.6455 42 1 1.7101 -10.2703 -1.4243 43 1 1.7460 -8.9843 -0.1941 44 1 1.2532 -13.7126 3.4777 45 1 2.7454 -6.4788 -5.8365 46 1 1.4433 -7.7851 -5.8243 47 1 -0.3493 -6.0002 -6.0196 48 1 0.9521 -4.6936 -6.0315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489042378.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:19 Heat of formation + Delta-G solvation = -37.609469 kcal Electronic energy + Delta-G solvation = -26463.450685 eV Core-core repulsion = 22645.777334 eV Total energy + Delta-G solvation = -3817.673351 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.46050 -39.72180 -38.41720 -37.04410 -35.11989 -33.98108 -32.43730 -30.88674 -29.83984 -28.71235 -26.43182 -25.57540 -25.20058 -23.26172 -22.51453 -21.37734 -20.49136 -20.41640 -19.30588 -17.85613 -17.43137 -16.53093 -16.36809 -16.20641 -15.98120 -15.38735 -15.35976 -14.98583 -14.83444 -14.48719 -14.25106 -13.82416 -13.68047 -13.31615 -13.21761 -13.16484 -12.85313 -12.79267 -12.56411 -12.51737 -12.02961 -11.90186 -11.84820 -11.79542 -11.50548 -11.26278 -11.00482 -10.72226 -10.61491 -10.54553 -10.43601 -10.29979 -9.84954 -9.79723 -9.49435 -9.35708 -9.01423 -8.94422 -8.49573 -6.91491 -6.28998 -4.00555 2.23423 2.71237 2.78950 2.98602 3.17167 3.33442 3.44839 3.47502 3.51602 3.73374 4.20551 4.24829 4.31097 4.33571 4.37968 4.47356 4.49000 4.54524 4.71164 4.74655 4.88288 4.97961 5.04247 5.10164 5.13254 5.28351 5.29902 5.32827 5.43327 5.45399 5.54943 5.59359 5.63816 5.68572 5.70268 5.73292 5.77269 5.78334 5.83496 5.85877 6.00634 6.10261 6.28926 6.51993 7.18152 7.61896 7.94106 7.97082 8.41299 8.49936 9.17354 10.80206 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009355 B = 0.002425 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2992.185694 B =11541.556852 C =13589.147573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.119 4.119 3 H 0.110 0.890 4 C -0.151 4.151 5 C -0.196 4.196 6 H 0.121 0.879 7 C 0.541 3.459 8 O -0.531 6.531 9 N -0.729 5.729 10 C 0.121 3.879 11 C -0.091 4.091 12 C -0.140 4.140 13 C 0.158 3.842 14 N -0.733 5.733 15 C 0.530 3.470 16 O -0.519 6.519 17 C -0.123 4.123 18 S -0.142 6.142 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.881 5.881 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C -0.165 4.165 28 C -0.161 4.161 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.400 0.600 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.399 0.601 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.271 0.729 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.342 25.061 -15.037 29.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.137 4.137 3 H 0.128 0.872 4 C -0.188 4.188 5 C -0.217 4.217 6 H 0.139 0.861 7 C 0.327 3.673 8 O -0.407 6.407 9 N -0.381 5.381 10 C -0.003 4.003 11 C -0.129 4.129 12 C -0.141 4.141 13 C 0.034 3.966 14 N -0.387 5.387 15 C 0.316 3.684 16 O -0.394 6.394 17 C -0.274 4.274 18 S 0.085 5.915 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.202 4.202 28 C -0.199 4.199 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.233 0.767 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.233 0.767 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.081 0.919 45 H 0.115 0.885 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.441 24.956 -14.778 29.206 hybrid contribution 1.962 -0.435 0.090 2.012 sum 5.403 24.520 -14.688 29.089 Atomic orbital electron populations 1.21376 0.91382 1.01669 1.02581 1.22378 0.96696 0.93472 1.01193 0.87170 1.23115 1.03202 1.01939 0.90548 1.22283 1.02039 1.01386 0.96042 0.86069 1.19691 0.88194 0.81208 0.78187 1.90734 1.14544 1.74761 1.60678 1.45962 1.10380 1.27555 1.54156 1.21337 0.93425 0.88901 0.96613 1.21267 0.97066 0.95532 0.99038 1.21524 1.01971 1.01091 0.89528 1.20756 0.92396 0.91450 0.91993 1.45900 1.10183 1.42885 1.39772 1.20277 0.88429 0.79791 0.79951 1.90709 1.13969 1.66528 1.68168 1.23272 1.02847 1.00785 1.00508 1.84814 1.12287 1.49932 1.44496 1.22315 0.94618 1.26269 1.23658 0.89408 1.24715 0.98416 0.94013 0.94182 1.69939 1.34257 1.24632 1.22909 0.86737 0.85314 0.81418 0.78406 1.19205 1.19939 1.15892 1.23102 0.98502 0.98850 0.99764 1.23036 0.99831 0.99565 0.97456 0.91610 0.93196 0.91426 0.88011 0.87742 0.76660 0.90994 0.91260 0.90885 0.90505 0.90845 0.91467 0.76715 0.88549 0.88557 0.91945 0.88481 0.88218 0.88239 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 8.43 37.16 0.31 -0.75 16 2 C -0.12 -0.89 6.41 -90.62 -0.58 -1.47 16 3 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.15 -1.07 9.88 -26.73 -0.26 -1.33 16 5 C -0.20 -1.43 6.19 -91.77 -0.57 -2.00 16 6 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 7 C 0.54 5.43 7.59 -10.98 -0.08 5.34 16 8 O -0.53 -7.33 13.10 5.56 0.07 -7.26 16 9 N -0.73 -5.60 5.56 -60.30 -0.33 -5.93 16 10 C 0.12 1.02 5.39 -4.04 -0.02 1.00 16 11 C -0.09 -0.57 5.10 -26.73 -0.14 -0.70 16 12 C -0.14 -1.02 1.57 -154.51 -0.24 -1.26 16 13 C 0.16 1.71 5.30 -4.04 -0.02 1.69 16 14 N -0.73 -8.97 5.40 -60.29 -0.33 -9.30 16 15 C 0.53 9.33 7.85 -10.99 -0.09 9.25 16 16 O -0.52 -11.30 15.86 5.56 0.09 -11.21 16 17 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 18 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 19 C -0.52 -15.03 10.04 30.94 0.31 -14.72 16 20 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 21 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 22 N -0.88 -26.62 13.97 55.49 0.78 -25.85 16 23 Si 0.86 21.93 27.74 -169.99 -4.71 17.22 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 26 H -0.23 -6.03 6.74 56.52 0.38 -5.65 16 27 C -0.17 -1.04 9.94 -26.69 -0.27 -1.31 16 28 C -0.16 -1.03 9.95 -26.69 -0.27 -1.29 16 29 H 0.06 0.74 7.01 -51.93 -0.36 0.38 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.72 7.26 -51.93 -0.38 0.34 16 32 H 0.10 0.87 8.05 -51.93 -0.42 0.45 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.40 1.93 8.47 -40.82 -0.35 1.58 16 35 H 0.07 0.81 7.26 -51.93 -0.38 0.43 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 38 H 0.08 0.48 7.53 -51.93 -0.39 0.09 16 39 H 0.07 0.91 7.17 -51.93 -0.37 0.54 16 40 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 41 H 0.40 3.79 7.91 -40.82 -0.32 3.47 16 42 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 43 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 409.20 15.07 6.17 6.17 Total: -1.00 -36.07 409.20 -10.09 -46.16 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -8.04 Total: 2.61 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -1.79 Total: -7.01 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.11 Total: -41.08 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.16 Total: -18.46 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.07 -10.09 -46.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489042378.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.546 kcal (2) G-P(sol) polarization free energy of solvation -36.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds