Wall clock time and date at job start Sat Apr 11 2020 06:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 115.54880 * 2 1 4 4 C 1.53002 * 117.51740 * 145.68838 * 2 1 3 5 5 C 1.52992 * 117.50304 * 214.31934 * 2 1 3 6 6 H 1.09002 * 117.50246 * 144.97151 * 5 2 1 7 7 C 1.50710 * 117.49948 * 359.97438 * 5 2 1 8 8 O 1.21280 * 119.99289 * 359.97438 * 7 5 2 9 9 N 1.34769 * 119.99992 * 180.27278 * 7 5 2 10 10 C 1.46499 * 120.00035 * 179.72001 * 9 7 5 11 11 C 1.52996 * 109.47452 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47138 * 185.08582 * 11 10 9 13 13 C 1.52999 * 115.54968 * 295.64399 * 12 11 10 14 14 N 1.46507 * 109.47249 * 297.21261 * 13 12 11 15 15 C 1.34774 * 119.99831 * 176.86984 * 14 13 12 16 16 O 1.21282 * 120.00075 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99839 * 180.02562 * 15 14 13 18 18 S 1.80999 * 109.47338 * 179.97438 * 17 15 14 19 19 C 1.76199 * 99.99941 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00459 * 359.97438 * 19 18 17 21 21 C 1.38800 * 119.99936 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00273 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99837 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46961 * 90.00185 * 23 21 19 25 25 H 1.48506 * 109.47006 * 210.00223 * 23 21 19 26 26 H 1.48499 * 109.47347 * 330.00467 * 23 21 19 27 27 C 1.52999 * 117.50181 * 149.97769 * 12 11 10 28 28 C 1.53002 * 117.50057 * 81.31627 * 12 11 10 29 29 H 1.09000 * 109.46738 * 205.67988 * 1 2 3 30 30 H 1.08993 * 109.47269 * 325.67745 * 1 2 3 31 31 H 1.08999 * 109.46663 * 85.68311 * 1 2 3 32 32 H 1.08998 * 117.50123 * 359.97438 * 4 2 1 33 33 H 1.09003 * 117.49835 * 214.97021 * 4 2 1 34 34 H 0.97000 * 120.00315 * 359.73033 * 9 7 5 35 35 H 1.08999 * 109.47106 * 300.00449 * 10 9 7 36 36 H 1.09000 * 109.47046 * 60.00238 * 10 9 7 37 37 H 1.09002 * 109.46966 * 305.08368 * 11 10 9 38 38 H 1.09002 * 109.46954 * 65.08122 * 11 10 9 39 39 H 1.09003 * 109.47414 * 57.21218 * 13 12 11 40 40 H 1.09002 * 109.46965 * 177.21267 * 13 12 11 41 41 H 0.96994 * 119.99525 * 356.86885 * 14 13 12 42 42 H 1.09003 * 109.47252 * 300.00271 * 17 15 14 43 43 H 1.09011 * 109.47121 * 59.99806 * 17 15 14 44 44 H 0.97000 * 119.99986 * 179.97438 * 22 21 19 45 45 H 1.09005 * 117.49555 * 359.97438 * 27 12 11 46 46 H 1.09001 * 117.50233 * 145.01499 * 27 12 11 47 47 H 1.09005 * 117.49658 * 214.97987 * 28 12 11 48 48 H 1.08993 * 117.50156 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1208 0.7649 5 6 2.2365 -1.1208 -0.7651 6 1 3.1712 -0.8747 -1.2690 7 6 1.3721 -2.1408 -1.4607 8 8 0.1640 -2.0539 -1.4002 9 7 1.9417 -3.1527 -2.1447 10 6 1.1015 -4.1476 -2.8157 11 6 1.9906 -5.1794 -3.5127 12 6 1.1176 -6.1442 -4.3176 13 6 0.1632 -7.0128 -3.4956 14 7 0.9376 -7.8841 -2.6082 15 6 0.3033 -8.6969 -1.7402 16 8 -0.9086 -8.7066 -1.6933 17 6 1.0998 -9.5928 -0.8270 18 16 -0.0294 -10.5535 0.2112 19 6 1.1354 -11.4838 1.1506 20 1 2.1939 -11.3522 0.9814 21 6 0.6926 -12.3866 2.1074 22 7 1.5627 -13.0820 2.8088 23 14 -1.1383 -12.6147 2.3996 24 1 -1.6518 -13.6867 1.5095 25 1 -1.3699 -12.9945 3.8165 26 1 -1.8487 -11.3444 2.1052 27 6 1.7243 -6.7608 -5.5795 28 6 0.6428 -5.6839 -5.6973 29 1 -0.3633 -0.9262 0.4453 30 1 -0.3633 0.8487 0.5794 31 1 -0.3632 0.0774 -1.0248 32 1 1.6120 -1.8582 1.2687 33 1 3.1721 -0.8747 1.2679 34 1 2.9081 -3.2223 -2.1926 35 1 0.4730 -4.6484 -2.0793 36 1 0.4714 -3.6523 -3.5544 37 1 2.6820 -4.6693 -4.1834 38 1 2.5546 -5.7372 -2.7651 39 1 -0.4878 -6.3734 -2.8994 40 1 -0.4418 -7.6228 -4.1664 41 1 1.9068 -7.8761 -2.6455 42 1 1.7101 -10.2703 -1.4243 43 1 1.7460 -8.9843 -0.1941 44 1 1.2532 -13.7126 3.4777 45 1 2.7454 -6.4788 -5.8365 46 1 1.4433 -7.7851 -5.8243 47 1 -0.3493 -6.0002 -6.0196 48 1 0.9521 -4.6936 -6.0315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489042378.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:18 Heat of formation + Delta-G solvation = -62.658021 kcal Electronic energy + Delta-G solvation = -26464.536872 eV Core-core repulsion = 22645.777334 eV Total energy + Delta-G solvation = -3818.759538 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.21408 -40.82423 -39.36182 -37.68659 -35.90381 -35.17822 -34.67850 -31.59739 -31.23143 -29.40899 -27.95254 -27.33349 -25.87486 -23.86797 -23.06485 -22.00690 -21.77536 -21.18946 -20.23198 -19.62803 -18.15388 -17.87280 -17.34229 -17.09454 -17.06276 -16.73512 -16.52061 -16.17404 -15.80109 -15.60754 -15.32003 -14.96378 -14.90368 -14.58787 -14.35740 -14.23643 -14.01247 -13.59382 -13.42890 -13.36349 -13.19668 -13.14615 -13.02140 -12.73484 -12.58226 -12.40074 -12.32934 -12.15345 -11.88610 -11.29909 -11.21429 -11.18312 -11.09777 -11.04996 -10.75535 -10.55905 -10.54205 -10.17883 -10.06072 -9.01110 -8.52772 -6.23396 0.97451 1.29749 1.45629 1.49706 1.54078 1.54904 2.09331 2.19198 2.24407 2.68950 2.85155 2.85491 2.89644 3.59499 3.64038 3.70160 3.78618 3.87192 3.90183 3.94848 3.96494 4.16684 4.21003 4.26652 4.29986 4.44853 4.46692 4.56640 4.65193 4.74219 4.79950 4.84176 4.88936 4.95177 4.99696 5.03126 5.07609 5.09659 5.15778 5.18389 5.29581 5.37438 5.42042 5.55008 5.69910 6.10442 6.46223 6.56336 6.92739 7.18187 7.28114 8.59522 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009355 B = 0.002425 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2992.185694 B =11541.556852 C =13589.147573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.126 4.126 3 H 0.138 0.862 4 C -0.147 4.147 5 C -0.192 4.192 6 H 0.157 0.843 7 C 0.529 3.471 8 O -0.579 6.579 9 N -0.715 5.715 10 C 0.124 3.876 11 C -0.080 4.080 12 C -0.146 4.146 13 C 0.158 3.842 14 N -0.705 5.705 15 C 0.533 3.467 16 O -0.567 6.567 17 C -0.109 4.109 18 S -0.180 6.180 19 C -0.526 4.526 20 H 0.064 0.936 21 C 0.046 3.954 22 N -0.916 5.916 23 Si 0.912 3.088 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.239 1.239 27 C -0.152 4.152 28 C -0.158 4.158 29 H 0.036 0.964 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.417 0.583 35 H 0.037 0.963 36 H 0.060 0.940 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.417 0.583 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.277 0.723 45 H 0.119 0.881 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.477 26.682 -16.620 32.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.144 4.144 3 H 0.155 0.845 4 C -0.184 4.184 5 C -0.213 4.213 6 H 0.174 0.826 7 C 0.316 3.684 8 O -0.459 6.459 9 N -0.367 5.367 10 C 0.000 4.000 11 C -0.117 4.117 12 C -0.147 4.147 13 C 0.035 3.965 14 N -0.358 5.358 15 C 0.318 3.682 16 O -0.445 6.445 17 C -0.260 4.260 18 S 0.046 5.954 19 C -0.674 4.674 20 H 0.083 0.917 21 C -0.159 4.159 22 N -0.554 5.554 23 Si 0.735 3.265 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.163 1.163 27 C -0.188 4.188 28 C -0.195 4.195 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.150 0.850 34 H 0.254 0.746 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.120 0.880 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.254 0.746 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.086 0.914 45 H 0.137 0.863 46 H 0.111 0.889 47 H 0.112 0.888 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.665 26.585 -16.393 31.742 hybrid contribution 1.352 -0.863 0.473 1.672 sum 7.017 25.722 -15.920 31.053 Atomic orbital electron populations 1.21282 0.93440 1.00700 1.01315 1.22481 0.95255 0.94934 1.01756 0.84463 1.23148 1.03827 1.01022 0.90436 1.22393 1.02612 1.00243 0.96057 0.82590 1.20334 0.88004 0.81950 0.78069 1.90722 1.16757 1.75998 1.62414 1.45865 1.11250 1.26530 1.53082 1.21219 0.93800 0.89353 0.95602 1.21219 0.96570 0.94647 0.99286 1.21371 1.02236 1.01425 0.89705 1.20804 0.93078 0.91133 0.91523 1.45646 1.11146 1.41043 1.37991 1.20006 0.87600 0.80166 0.80411 1.90699 1.15792 1.68235 1.69788 1.23257 1.01729 1.00803 1.00219 1.84789 1.14054 1.50819 1.45736 1.22443 0.94228 1.26656 1.24084 0.91745 1.25537 1.02401 0.93885 0.94103 1.70009 1.36149 1.25489 1.23739 0.85894 0.80416 0.81154 0.79077 1.18656 1.18305 1.16328 1.23167 0.99498 0.98488 0.97692 1.23124 0.99898 1.00519 0.96009 0.94463 0.91824 0.93253 0.90346 0.85000 0.74606 0.94470 0.92140 0.87970 0.90002 0.92878 0.92238 0.74615 0.86618 0.86840 0.91353 0.86318 0.88883 0.88842 0.86817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 8.43 71.98 0.61 -1.54 16 2 C -0.13 -1.71 6.41 -10.80 -0.07 -1.78 16 3 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 4 C -0.15 -1.85 9.88 30.59 0.30 -1.55 16 5 C -0.19 -2.42 6.19 -11.54 -0.07 -2.49 16 6 H 0.16 0.86 8.14 -2.39 -0.02 0.84 16 7 C 0.53 10.43 7.59 87.66 0.67 11.09 16 8 O -0.58 -16.87 13.10 -3.03 -0.04 -16.91 16 9 N -0.72 -9.97 5.56 -463.07 -2.57 -12.55 16 10 C 0.12 2.02 5.39 86.38 0.47 2.49 16 11 C -0.08 -0.77 5.10 30.59 0.16 -0.61 16 12 C -0.15 -1.82 1.57 -52.18 -0.08 -1.90 16 13 C 0.16 3.33 5.30 86.38 0.46 3.79 16 14 N -0.70 -16.28 5.40 -463.04 -2.50 -18.78 16 15 C 0.53 18.46 7.85 87.66 0.69 19.15 16 16 O -0.57 -24.97 15.86 -3.04 -0.05 -25.01 16 17 C -0.11 -4.09 6.16 71.24 0.44 -3.66 16 18 S -0.18 -9.23 18.55 -56.49 -1.05 -10.28 16 19 C -0.53 -30.71 10.04 67.95 0.68 -30.03 16 20 H 0.06 3.93 8.03 -2.91 -0.02 3.91 16 21 C 0.05 2.73 5.50 84.86 0.47 3.19 16 22 N -0.92 -55.84 13.97 21.65 0.30 -55.54 16 23 Si 0.91 45.52 27.74 68.60 1.90 47.42 16 24 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 25 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.24 -12.02 6.74 99.48 0.67 -11.35 16 27 C -0.15 -1.42 9.94 30.62 0.30 -1.11 16 28 C -0.16 -1.63 9.95 30.62 0.30 -1.33 16 29 H 0.04 0.91 7.01 -2.39 -0.02 0.90 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 1.12 7.26 -2.39 -0.02 1.10 16 32 H 0.08 1.37 8.05 -2.39 -0.02 1.35 16 33 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.42 2.80 8.47 -92.71 -0.79 2.01 16 35 H 0.04 0.87 7.26 -2.39 -0.02 0.85 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.10 0.49 8.10 -2.39 -0.02 0.47 16 38 H 0.08 0.74 7.53 -2.39 -0.02 0.72 16 39 H 0.05 1.37 7.17 -2.39 -0.02 1.35 16 40 H 0.06 1.37 8.11 -2.39 -0.02 1.36 16 41 H 0.42 6.79 7.91 -92.71 -0.73 6.05 16 42 H 0.12 3.92 8.14 -2.39 -0.02 3.90 16 43 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 44 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 45 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 48 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -82.20 409.20 0.73 -81.47 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -0.59 Total: 16.47 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 5.32 Total: -6.30 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -4.77 Total: -86.87 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: -0.09 Total: -41.92 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.90 Total: 47.42 kcal Atomic # 16 Polarization: -9.23 SS G_CDS: -1.05 Total: -10.28 kcal Total: -82.20 0.73 -81.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489042378.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.812 kcal (2) G-P(sol) polarization free energy of solvation -82.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds