Wall clock time and date at job start Sat Apr 11 2020 06:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 115.54718 * 2 1 4 4 C 1.53077 * 117.51407 * 214.28374 * 2 1 3 5 5 C 1.53000 * 59.98451 * 252.52016 * 4 2 1 6 6 H 1.08994 * 117.49699 * 107.49923 * 5 4 2 7 7 C 1.50697 * 117.49983 * 252.49942 * 5 4 2 8 8 O 1.21283 * 119.99962 * 68.74651 * 7 5 4 9 9 N 1.34777 * 120.00028 * 248.74783 * 7 5 4 10 10 C 1.46499 * 120.00168 * 179.72518 * 9 7 5 11 11 C 1.52995 * 109.47100 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46918 * 174.93280 * 11 10 9 13 13 C 1.52992 * 115.55075 * 65.29139 * 12 11 10 14 14 N 1.46503 * 109.47150 * 65.15374 * 13 12 11 15 15 C 1.34775 * 120.00361 * 175.07071 * 14 13 12 16 16 O 1.21278 * 119.99533 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00235 * 180.02562 * 15 14 13 18 18 S 1.81003 * 109.47231 * 179.97438 * 17 15 14 19 19 C 1.76204 * 99.99793 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99913 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99652 * 179.97438 * 19 18 17 22 22 N 1.31635 * 119.99836 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99952 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46993 * 59.99888 * 23 21 19 25 25 H 1.48496 * 109.47120 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46807 * 300.00149 * 23 21 19 27 27 C 1.53005 * 117.49849 * 279.61943 * 12 11 10 28 28 C 1.53008 * 117.49791 * 210.96615 * 12 11 10 29 29 H 1.08995 * 109.46745 * 274.32189 * 1 2 3 30 30 H 1.08995 * 109.47367 * 34.32696 * 1 2 3 31 31 H 1.09002 * 109.46839 * 154.32612 * 1 2 3 32 32 H 1.08998 * 117.51069 * 145.03940 * 4 2 1 33 33 H 1.09000 * 117.49613 * 0.02562 * 4 2 1 34 34 H 0.97001 * 119.99790 * 359.97438 * 9 7 5 35 35 H 1.09008 * 109.46924 * 300.00025 * 10 9 7 36 36 H 1.09000 * 109.47079 * 59.99386 * 10 9 7 37 37 H 1.08994 * 109.47234 * 294.93334 * 11 10 9 38 38 H 1.09001 * 109.47587 * 54.93355 * 11 10 9 39 39 H 1.09000 * 109.46879 * 185.14776 * 13 12 11 40 40 H 1.08998 * 109.47463 * 305.15395 * 13 12 11 41 41 H 0.97006 * 119.99671 * 355.06728 * 14 13 12 42 42 H 1.09007 * 109.46544 * 299.99659 * 17 15 14 43 43 H 1.08996 * 109.47404 * 59.98926 * 17 15 14 44 44 H 0.97003 * 119.99340 * 179.97438 * 22 21 19 45 45 H 1.09005 * 117.49365 * 0.02562 * 27 12 11 46 46 H 1.08994 * 117.49816 * 145.01675 * 27 12 11 47 47 H 1.08996 * 117.49719 * 214.97849 * 28 12 11 48 48 H 1.09004 * 117.49635 * 359.97325 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2372 -1.1218 -0.7647 5 6 2.2365 -1.1208 0.7652 6 1 1.6113 -1.8581 1.2687 7 6 3.5290 -0.7806 1.4614 8 8 3.9705 0.3476 1.4032 9 7 4.1944 -1.7299 2.1487 10 6 5.4540 -1.4007 2.8205 11 6 5.9984 -2.6464 3.5224 12 6 7.3739 -2.3367 4.1167 13 6 7.3886 -1.2989 5.2408 14 7 6.6582 -1.8221 6.3980 15 6 6.6239 -1.1191 7.5473 16 8 7.1981 -0.0536 7.6237 17 6 5.8730 -1.6575 8.7378 18 16 6.0138 -0.4935 10.1168 19 6 5.0722 -1.3486 11.3363 20 1 4.6220 -2.3016 11.1006 21 6 4.9100 -0.7978 12.5999 22 7 5.4601 0.3630 12.8874 23 14 3.9124 -1.7046 13.8930 24 1 4.5299 -3.0293 14.1555 25 1 3.8903 -0.9107 15.1477 26 1 2.5233 -1.8943 13.4032 27 6 8.5761 -2.3708 3.1709 28 6 8.3814 -3.4851 4.2021 29 1 -0.3632 0.0774 1.0247 30 1 -0.3634 0.8486 -0.5795 31 1 -0.3633 -0.9262 -0.4452 32 1 3.1724 -0.8763 -1.2678 33 1 1.6121 -1.8594 -1.2681 34 1 3.8412 -2.6321 2.1956 35 1 6.1783 -1.0524 2.0840 36 1 5.2788 -0.6164 3.5569 37 1 5.3163 -2.9416 4.3196 38 1 6.0886 -3.4593 2.8019 39 1 8.4190 -1.0877 5.5267 40 1 6.9121 -0.3817 4.8947 41 1 6.1992 -2.6745 6.3369 42 1 4.8226 -1.7867 8.4767 43 1 6.2957 -2.6189 9.0296 44 1 5.3464 0.7481 13.7705 45 1 8.3870 -2.6134 2.1252 46 1 9.3776 -1.6541 3.3497 47 1 9.0549 -3.5010 5.0590 48 1 8.0641 -4.4613 3.8353 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489042380.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:23 Heat of formation + Delta-G solvation = -42.277532 kcal Electronic energy + Delta-G solvation = -26068.040152 eV Core-core repulsion = 22250.164379 eV Total energy + Delta-G solvation = -3817.875774 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.37683 -39.62591 -38.32311 -37.21248 -35.15921 -33.87209 -32.41975 -30.85942 -29.70123 -29.03849 -26.36625 -25.42736 -25.11566 -23.25620 -22.48770 -21.28089 -20.50640 -20.29680 -19.34468 -17.87200 -17.65511 -16.51683 -16.45225 -16.12163 -15.69711 -15.42437 -15.01917 -14.85807 -14.79460 -14.72839 -14.14067 -13.89822 -13.76936 -13.59418 -13.19344 -13.09228 -13.06182 -12.58521 -12.52228 -12.46904 -11.97982 -11.85713 -11.81592 -11.76977 -11.44503 -11.03954 -11.03575 -10.79748 -10.78413 -10.60624 -10.51291 -10.29263 -10.04572 -9.81500 -9.38983 -9.35748 -9.05630 -8.84867 -8.22690 -6.48929 -6.20645 -3.91253 2.19488 2.73532 2.98182 3.12157 3.23643 3.24967 3.29047 3.39863 3.44317 3.82152 4.19198 4.21193 4.28572 4.32793 4.35220 4.37853 4.52232 4.55694 4.73653 4.89223 4.90873 5.00123 5.10907 5.14213 5.19498 5.22502 5.26815 5.34071 5.35515 5.45468 5.49663 5.57447 5.59756 5.65581 5.68918 5.74381 5.77126 5.82091 5.89887 5.90686 5.92352 6.11429 6.14206 6.62457 7.15882 7.59762 7.73119 7.93350 8.35669 8.63526 9.24306 10.86690 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009807 B = 0.002113 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.325982 B =13246.245769 C =15279.399574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 H 0.118 0.882 4 C -0.149 4.149 5 C -0.193 4.193 6 H 0.123 0.877 7 C 0.541 3.459 8 O -0.537 6.537 9 N -0.727 5.727 10 C 0.119 3.881 11 C -0.091 4.091 12 C -0.140 4.140 13 C 0.157 3.843 14 N -0.735 5.735 15 C 0.531 3.469 16 O -0.518 6.518 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.162 4.162 28 C -0.164 4.164 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.400 0.600 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.397 0.603 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.269 0.731 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.782 -11.071 -28.761 31.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.140 4.140 3 H 0.136 0.864 4 C -0.187 4.187 5 C -0.214 4.214 6 H 0.141 0.859 7 C 0.327 3.673 8 O -0.414 6.414 9 N -0.379 5.379 10 C -0.004 4.004 11 C -0.129 4.129 12 C -0.141 4.141 13 C 0.033 3.967 14 N -0.390 5.390 15 C 0.317 3.683 16 O -0.392 6.392 17 C -0.303 4.303 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.199 4.199 28 C -0.201 4.201 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.234 0.766 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.231 0.769 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.449 -8.298 -28.517 29.801 hybrid contribution -1.633 -2.802 0.859 3.355 sum -4.081 -11.100 -27.658 30.081 Atomic orbital electron populations 1.21412 0.92094 1.02252 1.02424 1.22406 0.95351 0.95112 1.01103 0.86415 1.23116 1.03173 1.01711 0.90688 1.22314 0.97771 1.05607 0.95734 0.85861 1.19682 0.84649 0.84679 0.78254 1.90726 1.68526 1.20947 1.61164 1.45916 1.24776 1.13437 1.53765 1.21367 0.84748 0.97715 0.96558 1.21269 0.94680 0.97178 0.99765 1.21529 0.91321 1.01118 1.00158 1.20746 0.97548 0.94819 0.83541 1.45941 1.56030 1.24814 1.12175 1.20305 0.80331 0.84500 0.83174 1.90709 1.43938 1.21622 1.82912 1.23523 1.02230 1.05690 0.98892 1.85420 1.69641 1.25948 1.02305 1.22824 1.37920 1.08762 0.98921 0.91008 1.24997 0.95792 0.95096 0.97732 1.70014 1.41936 1.16410 1.21891 0.86224 0.80072 0.79382 0.79816 1.19951 1.20809 1.19959 1.23040 0.98828 1.02012 0.96035 1.23086 1.01660 0.93582 1.01805 0.91767 0.91563 0.92351 0.88316 0.87756 0.76571 0.91219 0.90880 0.90538 0.90873 0.91142 0.91225 0.76907 0.89322 0.89282 0.92130 0.88412 0.88210 0.88208 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 10.19 37.16 0.38 -0.31 16 2 C -0.12 -0.90 5.92 -90.58 -0.54 -1.44 16 3 H 0.12 1.10 7.67 -51.93 -0.40 0.70 16 4 C -0.15 -0.89 9.88 -26.69 -0.26 -1.16 16 5 C -0.19 -1.40 5.91 -91.77 -0.54 -1.94 16 6 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 7 C 0.54 5.57 7.61 -10.99 -0.08 5.48 16 8 O -0.54 -7.92 16.26 5.55 0.09 -7.83 16 9 N -0.73 -5.64 5.56 -60.29 -0.33 -5.98 16 10 C 0.12 1.03 5.41 -4.04 -0.02 1.01 16 11 C -0.09 -0.59 5.12 -26.73 -0.14 -0.72 16 12 C -0.14 -1.09 1.56 -154.50 -0.24 -1.33 16 13 C 0.16 1.82 5.35 -4.04 -0.02 1.80 16 14 N -0.73 -9.60 5.47 -60.30 -0.33 -9.93 16 15 C 0.53 9.94 7.85 -10.99 -0.09 9.85 16 16 O -0.52 -11.95 15.86 5.56 0.09 -11.86 16 17 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 23 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 C -0.16 -1.11 9.94 -26.69 -0.27 -1.38 16 28 C -0.16 -1.14 9.94 -26.69 -0.27 -1.40 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.25 7.90 -51.93 -0.41 -0.16 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.10 0.42 8.05 -51.93 -0.42 0.00 16 34 H 0.40 1.89 8.47 -40.82 -0.35 1.55 16 35 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 36 H 0.07 0.83 7.23 -51.93 -0.38 0.45 16 37 H 0.08 0.48 7.49 -51.93 -0.39 0.09 16 38 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 39 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 40 H 0.07 0.90 7.11 -51.93 -0.37 0.53 16 41 H 0.40 4.04 7.83 -40.82 -0.32 3.72 16 42 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 43 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 417.25 15.07 6.29 6.29 Total: -1.00 -37.08 417.25 -10.43 -47.50 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -8.06 Total: 2.25 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -1.67 Total: -7.43 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.07 Total: -41.50 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: 0.18 Total: -19.69 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -37.08 -10.43 -47.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489042380.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.225 kcal (2) G-P(sol) polarization free energy of solvation -37.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds