Wall clock time and date at job start Sat Apr 11 2020 06:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 115.54718 * 2 1 4 4 C 1.53077 * 117.51407 * 214.28374 * 2 1 3 5 5 C 1.53000 * 59.98451 * 252.52016 * 4 2 1 6 6 H 1.08994 * 117.49699 * 107.49923 * 5 4 2 7 7 C 1.50697 * 117.49983 * 252.49942 * 5 4 2 8 8 O 1.21283 * 119.99962 * 68.74651 * 7 5 4 9 9 N 1.34777 * 120.00028 * 248.74783 * 7 5 4 10 10 C 1.46499 * 120.00168 * 179.72518 * 9 7 5 11 11 C 1.52995 * 109.47100 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46918 * 174.93280 * 11 10 9 13 13 C 1.52992 * 115.55075 * 65.29139 * 12 11 10 14 14 N 1.46503 * 109.47150 * 65.15374 * 13 12 11 15 15 C 1.34775 * 120.00361 * 175.07071 * 14 13 12 16 16 O 1.21278 * 119.99533 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00235 * 180.02562 * 15 14 13 18 18 S 1.81003 * 109.47231 * 179.97438 * 17 15 14 19 19 C 1.76204 * 99.99793 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99913 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99652 * 179.97438 * 19 18 17 22 22 N 1.31635 * 119.99836 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99952 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46993 * 59.99888 * 23 21 19 25 25 H 1.48496 * 109.47120 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46807 * 300.00149 * 23 21 19 27 27 C 1.53005 * 117.49849 * 279.61943 * 12 11 10 28 28 C 1.53008 * 117.49791 * 210.96615 * 12 11 10 29 29 H 1.08995 * 109.46745 * 274.32189 * 1 2 3 30 30 H 1.08995 * 109.47367 * 34.32696 * 1 2 3 31 31 H 1.09002 * 109.46839 * 154.32612 * 1 2 3 32 32 H 1.08998 * 117.51069 * 145.03940 * 4 2 1 33 33 H 1.09000 * 117.49613 * 0.02562 * 4 2 1 34 34 H 0.97001 * 119.99790 * 359.97438 * 9 7 5 35 35 H 1.09008 * 109.46924 * 300.00025 * 10 9 7 36 36 H 1.09000 * 109.47079 * 59.99386 * 10 9 7 37 37 H 1.08994 * 109.47234 * 294.93334 * 11 10 9 38 38 H 1.09001 * 109.47587 * 54.93355 * 11 10 9 39 39 H 1.09000 * 109.46879 * 185.14776 * 13 12 11 40 40 H 1.08998 * 109.47463 * 305.15395 * 13 12 11 41 41 H 0.97006 * 119.99671 * 355.06728 * 14 13 12 42 42 H 1.09007 * 109.46544 * 299.99659 * 17 15 14 43 43 H 1.08996 * 109.47404 * 59.98926 * 17 15 14 44 44 H 0.97003 * 119.99340 * 179.97438 * 22 21 19 45 45 H 1.09005 * 117.49365 * 0.02562 * 27 12 11 46 46 H 1.08994 * 117.49816 * 145.01675 * 27 12 11 47 47 H 1.08996 * 117.49719 * 214.97849 * 28 12 11 48 48 H 1.09004 * 117.49635 * 359.97325 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2372 -1.1218 -0.7647 5 6 2.2365 -1.1208 0.7652 6 1 1.6113 -1.8581 1.2687 7 6 3.5290 -0.7806 1.4614 8 8 3.9705 0.3476 1.4032 9 7 4.1944 -1.7299 2.1487 10 6 5.4540 -1.4007 2.8205 11 6 5.9984 -2.6464 3.5224 12 6 7.3739 -2.3367 4.1167 13 6 7.3886 -1.2989 5.2408 14 7 6.6582 -1.8221 6.3980 15 6 6.6239 -1.1191 7.5473 16 8 7.1981 -0.0536 7.6237 17 6 5.8730 -1.6575 8.7378 18 16 6.0138 -0.4935 10.1168 19 6 5.0722 -1.3486 11.3363 20 1 4.6220 -2.3016 11.1006 21 6 4.9100 -0.7978 12.5999 22 7 5.4601 0.3630 12.8874 23 14 3.9124 -1.7046 13.8930 24 1 4.5299 -3.0293 14.1555 25 1 3.8903 -0.9107 15.1477 26 1 2.5233 -1.8943 13.4032 27 6 8.5761 -2.3708 3.1709 28 6 8.3814 -3.4851 4.2021 29 1 -0.3632 0.0774 1.0247 30 1 -0.3634 0.8486 -0.5795 31 1 -0.3633 -0.9262 -0.4452 32 1 3.1724 -0.8763 -1.2678 33 1 1.6121 -1.8594 -1.2681 34 1 3.8412 -2.6321 2.1956 35 1 6.1783 -1.0524 2.0840 36 1 5.2788 -0.6164 3.5569 37 1 5.3163 -2.9416 4.3196 38 1 6.0886 -3.4593 2.8019 39 1 8.4190 -1.0877 5.5267 40 1 6.9121 -0.3817 4.8947 41 1 6.1992 -2.6745 6.3369 42 1 4.8226 -1.7867 8.4767 43 1 6.2957 -2.6189 9.0296 44 1 5.3464 0.7481 13.7705 45 1 8.3870 -2.6134 2.1252 46 1 9.3776 -1.6541 3.3497 47 1 9.0549 -3.5010 5.0590 48 1 8.0641 -4.4613 3.8353 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489042380.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:23 Heat of formation + Delta-G solvation = -68.315984 kcal Electronic energy + Delta-G solvation = -26069.169264 eV Core-core repulsion = 22250.164379 eV Total energy + Delta-G solvation = -3819.004886 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.16185 -40.77621 -39.33958 -37.82988 -35.97537 -35.15129 -34.58412 -31.57372 -31.17298 -29.51838 -27.84085 -27.22828 -25.79441 -23.87893 -23.07002 -21.87860 -21.73502 -21.17651 -20.24974 -19.63775 -18.41031 -17.83976 -17.29827 -17.25103 -16.88169 -16.66647 -16.53322 -15.99847 -15.76208 -15.55514 -15.50442 -14.86132 -14.60510 -14.45570 -14.43047 -14.19016 -14.13496 -13.73092 -13.36870 -13.17731 -13.16070 -12.93752 -12.86270 -12.69198 -12.59136 -12.34944 -12.33572 -12.15547 -11.75839 -11.37395 -11.29027 -11.13176 -11.12335 -11.07274 -10.83553 -10.68587 -10.28203 -10.19493 -10.07553 -8.67804 -8.34606 -6.13325 1.25998 1.43952 1.44148 1.46429 1.56042 1.59982 2.07055 2.21744 2.27792 2.83228 2.87473 2.99317 3.32583 3.58705 3.66376 3.70237 3.76328 3.86043 3.92261 3.92938 3.99907 4.18945 4.24616 4.27947 4.31414 4.40866 4.49277 4.55641 4.63866 4.72959 4.76373 4.83327 4.85466 4.92772 5.00016 5.04574 5.07244 5.09132 5.18285 5.20667 5.29095 5.37979 5.40237 5.41248 5.43216 6.19354 6.50486 6.52202 7.06205 7.22484 7.23732 8.74383 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009807 B = 0.002113 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.325982 B =13246.245769 C =15279.399574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.139 4.139 3 H 0.087 0.913 4 C -0.130 4.130 5 C -0.194 4.194 6 H 0.151 0.849 7 C 0.531 3.469 8 O -0.593 6.593 9 N -0.711 5.711 10 C 0.122 3.878 11 C -0.079 4.079 12 C -0.145 4.145 13 C 0.157 3.843 14 N -0.705 5.705 15 C 0.531 3.469 16 O -0.570 6.570 17 C -0.127 4.127 18 S -0.156 6.156 19 C -0.546 4.546 20 H 0.084 0.916 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.260 1.260 25 H -0.280 1.280 26 H -0.262 1.262 27 C -0.158 4.158 28 C -0.151 4.151 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.134 0.866 34 H 0.419 0.581 35 H 0.060 0.940 36 H 0.039 0.961 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.416 0.584 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.271 0.729 45 H 0.116 0.884 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.445 -15.405 -30.162 34.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.158 4.158 3 H 0.105 0.895 4 C -0.168 4.168 5 C -0.215 4.215 6 H 0.169 0.831 7 C 0.319 3.681 8 O -0.474 6.474 9 N -0.363 5.363 10 C -0.002 4.002 11 C -0.116 4.116 12 C -0.147 4.147 13 C 0.034 3.966 14 N -0.359 5.359 15 C 0.317 3.683 16 O -0.448 6.448 17 C -0.278 4.278 18 S 0.071 5.929 19 C -0.693 4.693 20 H 0.103 0.897 21 C -0.194 4.194 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.185 1.185 25 H -0.205 1.205 26 H -0.186 1.186 27 C -0.196 4.196 28 C -0.188 4.188 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.152 0.848 34 H 0.256 0.744 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.254 0.746 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.080 0.920 45 H 0.134 0.866 46 H 0.109 0.891 47 H 0.107 0.893 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.128 -12.730 -29.959 32.812 hybrid contribution -1.039 -1.444 1.158 2.122 sum -5.167 -14.174 -28.802 32.513 Atomic orbital electron populations 1.21391 0.90466 1.03393 1.02382 1.22414 0.96588 0.94202 1.02600 0.89489 1.23201 1.02797 1.01079 0.89679 1.22384 0.96409 1.06079 0.96594 0.83098 1.20336 0.85538 0.84158 0.78053 1.90703 1.70124 1.23318 1.63283 1.45803 1.24119 1.13968 1.52420 1.21262 0.85031 0.98213 0.95721 1.21220 0.93508 0.96543 1.00337 1.21373 0.92838 1.01026 0.99421 1.20787 0.96102 0.95795 0.83962 1.45651 1.54814 1.24656 1.10771 1.20124 0.79858 0.84109 0.84197 1.90698 1.46308 1.23974 1.83869 1.23354 1.04005 1.04117 0.96366 1.85645 1.70402 1.30329 1.06500 1.23170 1.37818 1.09095 0.99251 0.89750 1.26172 0.96905 0.95925 1.00354 1.70192 1.43659 1.18415 1.22582 0.84982 0.78508 0.78140 0.76230 1.18489 1.20501 1.18609 1.23130 0.97681 1.01864 0.96921 1.23147 1.00180 0.94203 1.01276 0.92240 0.91420 0.90367 0.89299 0.84771 0.74367 0.92139 0.94274 0.89783 0.87773 0.92563 0.93030 0.74646 0.87227 0.86978 0.92025 0.86614 0.89056 0.89255 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 10.19 71.98 0.73 -0.43 16 2 C -0.14 -2.02 5.92 -10.77 -0.06 -2.08 16 3 H 0.09 1.79 7.67 -2.39 -0.02 1.77 16 4 C -0.13 -1.31 9.88 30.62 0.30 -1.01 16 5 C -0.19 -2.52 5.91 -11.54 -0.07 -2.58 16 6 H 0.15 1.09 8.14 -2.39 -0.02 1.07 16 7 C 0.53 10.85 7.61 87.66 0.67 11.52 16 8 O -0.59 -18.55 16.26 -3.04 -0.05 -18.60 16 9 N -0.71 -10.01 5.56 -463.06 -2.57 -12.58 16 10 C 0.12 2.02 5.41 86.38 0.47 2.49 16 11 C -0.08 -0.78 5.12 30.59 0.16 -0.63 16 12 C -0.15 -1.98 1.56 -52.18 -0.08 -2.06 16 13 C 0.16 3.63 5.35 86.38 0.46 4.09 16 14 N -0.70 -17.68 5.47 -463.08 -2.53 -20.22 16 15 C 0.53 19.96 7.85 87.66 0.69 20.65 16 16 O -0.57 -27.42 15.86 -3.02 -0.05 -27.46 16 17 C -0.13 -5.05 6.16 71.24 0.44 -4.61 16 18 S -0.16 -8.79 20.57 -56.49 -1.16 -9.95 16 19 C -0.55 -31.28 9.50 67.95 0.65 -30.63 16 20 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 21 C 0.01 0.63 5.49 84.86 0.47 1.10 16 22 N -0.91 -56.64 13.22 21.65 0.29 -56.36 16 23 Si 1.00 43.63 29.55 68.60 2.03 45.66 16 24 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 25 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 27 C -0.16 -1.84 9.94 30.62 0.30 -1.54 16 28 C -0.15 -1.62 9.94 30.62 0.30 -1.32 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.45 7.90 -2.39 -0.02 0.43 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.13 0.57 8.05 -2.39 -0.02 0.55 16 34 H 0.42 2.67 8.47 -92.71 -0.79 1.89 16 35 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.04 0.93 7.23 -2.39 -0.02 0.91 16 37 H 0.08 0.75 7.49 -2.39 -0.02 0.73 16 38 H 0.10 0.50 8.09 -2.39 -0.02 0.48 16 39 H 0.06 1.48 8.09 -2.39 -0.02 1.46 16 40 H 0.05 1.41 7.11 -2.39 -0.02 1.39 16 41 H 0.42 7.33 7.83 -92.70 -0.73 6.60 16 42 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 43 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 44 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 45 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 46 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 47 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -86.81 417.25 0.83 -85.98 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -0.55 Total: 20.57 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 5.42 Total: -7.04 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -4.82 Total: -89.16 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -0.10 Total: -46.06 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.16 Total: -9.95 kcal Total: -86.81 0.83 -85.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489042380.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.668 kcal (2) G-P(sol) polarization free energy of solvation -86.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds