Wall clock time and date at job start Sat Apr 11 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 115.56012 * 2 1 4 4 C 1.53002 * 117.49901 * 145.68687 * 2 1 3 5 5 C 1.52994 * 117.50019 * 214.31107 * 2 1 3 6 6 H 1.08998 * 117.51508 * 359.97438 * 5 2 1 7 7 C 1.50699 * 117.50255 * 145.01899 * 5 2 1 8 8 O 1.21282 * 120.00086 * 0.02562 * 7 5 2 9 9 N 1.34774 * 119.99839 * 180.02562 * 7 5 2 10 10 C 1.46507 * 119.99831 * 180.02562 * 9 7 5 11 11 C 1.52999 * 109.47249 * 176.86984 * 10 9 7 12 12 C 1.52997 * 115.54968 * 297.21261 * 11 10 9 13 13 C 1.52996 * 109.47138 * 295.64399 * 12 11 10 14 14 N 1.46503 * 109.47233 * 185.08294 * 13 12 11 15 15 C 1.34774 * 120.00123 * 179.97438 * 14 13 12 16 16 O 1.21284 * 120.00002 * 0.02562 * 15 14 13 17 17 C 1.50694 * 120.00187 * 179.72597 * 15 14 13 18 18 S 1.80992 * 109.47412 * 180.27841 * 17 15 14 19 19 C 1.76201 * 100.00425 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99792 * 0.02562 * 19 18 17 21 21 C 1.38791 * 120.00211 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00201 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99891 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46909 * 90.00615 * 23 21 19 25 25 H 1.48502 * 109.47121 * 210.00124 * 23 21 19 26 26 H 1.48502 * 109.47092 * 330.00433 * 23 21 19 27 27 C 1.53009 * 117.49512 * 82.88115 * 11 10 9 28 28 C 1.53000 * 117.49556 * 151.53744 * 11 10 9 29 29 H 1.09005 * 109.47144 * 205.69607 * 1 2 3 30 30 H 1.09006 * 109.47116 * 325.69156 * 1 2 3 31 31 H 1.08998 * 109.47206 * 85.69015 * 1 2 3 32 32 H 1.09000 * 117.49690 * 359.97438 * 4 2 1 33 33 H 1.09007 * 117.51839 * 214.97375 * 4 2 1 34 34 H 0.96994 * 120.00644 * 0.02562 * 9 7 5 35 35 H 1.08994 * 109.47064 * 56.86765 * 10 9 7 36 36 H 1.09009 * 109.46827 * 296.87079 * 10 9 7 37 37 H 1.09002 * 109.47017 * 175.64644 * 12 11 10 38 38 H 1.09001 * 109.47417 * 55.65008 * 12 11 10 39 39 H 1.08999 * 109.47208 * 65.08346 * 13 12 11 40 40 H 1.09001 * 109.47064 * 305.08040 * 13 12 11 41 41 H 0.96999 * 119.99417 * 0.02562 * 14 13 12 42 42 H 1.08999 * 109.46861 * 300.27668 * 17 15 14 43 43 H 1.08999 * 109.47466 * 60.27586 * 17 15 14 44 44 H 0.97004 * 120.00028 * 179.97438 * 22 21 19 45 45 H 1.08999 * 117.49188 * 215.00377 * 27 11 10 46 46 H 1.08998 * 117.49690 * 0.02562 * 27 11 10 47 47 H 1.08998 * 117.50249 * 359.97438 * 28 11 10 48 48 H 1.09002 * 117.49622 * 144.97869 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2364 -1.1210 0.7650 5 6 2.2364 -1.1209 -0.7650 6 1 1.6115 -1.8588 -1.2680 7 6 3.5292 -0.7811 -1.4608 8 8 3.9720 0.3464 -1.4009 9 7 4.1933 -1.7302 -2.1498 10 6 5.4504 -1.3999 -2.8258 11 6 6.0342 -2.6628 -3.4625 12 6 6.4146 -3.7783 -2.4870 13 6 7.5475 -3.2968 -1.5785 14 7 7.9941 -4.4023 -0.7271 15 6 8.9908 -4.2100 0.1595 16 8 9.5177 -3.1216 0.2529 17 6 9.4459 -5.3454 1.0396 18 16 10.7822 -4.7743 2.1185 19 6 11.1105 -6.2578 3.0106 20 1 10.5410 -7.1512 2.8011 21 6 12.1018 -6.2787 3.9818 22 7 12.7964 -5.1900 4.2369 23 14 12.4494 -7.8514 4.9281 24 1 13.4817 -8.6424 4.2113 25 1 12.9411 -7.5126 6.2878 26 1 11.2017 -8.6493 5.0374 27 6 5.4952 -3.0765 -4.8335 28 6 6.9029 -2.4881 -4.7098 29 1 -0.3634 -0.9261 0.4456 30 1 -0.3634 0.8489 0.5793 31 1 -0.3633 0.0772 -1.0247 32 1 1.6112 -1.8582 1.2687 33 1 3.1716 -0.8755 1.2684 34 1 3.8391 -2.6318 -2.1980 35 1 6.1582 -0.9982 -2.1008 36 1 5.2620 -0.6563 -3.6002 37 1 6.7447 -4.6535 -3.0467 38 1 5.5484 -4.0409 -1.8796 39 1 7.1894 -2.4787 -0.9535 40 1 8.3806 -2.9495 -2.1895 41 1 7.5728 -5.2728 -0.8020 42 1 8.6102 -5.6909 1.6481 43 1 9.8061 -6.1651 0.4180 44 1 13.4889 -5.2045 4.9159 45 1 5.4117 -4.1434 -5.0403 46 1 4.7251 -2.4487 -5.2819 47 1 7.0583 -1.4737 -5.0770 48 1 7.7458 -3.1678 -4.8352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489048922.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:26 Heat of formation + Delta-G solvation = -42.420190 kcal Electronic energy + Delta-G solvation = -26157.158573 eV Core-core repulsion = 22339.276613 eV Total energy + Delta-G solvation = -3817.881960 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.45392 -39.40231 -38.66089 -37.04154 -34.74842 -34.39495 -32.42856 -30.94808 -29.40409 -28.64686 -27.46344 -25.49718 -23.92548 -23.70752 -22.62447 -21.22417 -20.53547 -20.36153 -19.34812 -17.86920 -17.66764 -16.53121 -16.26530 -16.02631 -15.81869 -15.58476 -15.16335 -14.88736 -14.80228 -14.48031 -14.16456 -13.99159 -13.76852 -13.62384 -13.24038 -13.15866 -12.95944 -12.58250 -12.42677 -12.35175 -12.21783 -11.90655 -11.79256 -11.71230 -11.43336 -11.06488 -11.02511 -10.77824 -10.76203 -10.68687 -10.48269 -10.39083 -9.98104 -9.81417 -9.40559 -9.35737 -9.07096 -8.87743 -8.23082 -6.49825 -6.21452 -3.92118 2.22025 2.67704 3.02179 3.11100 3.22091 3.26907 3.30355 3.37122 3.47898 3.70904 4.17342 4.20361 4.24419 4.31255 4.37835 4.42439 4.46354 4.51552 4.74956 4.91854 4.93307 5.03851 5.13550 5.18744 5.19433 5.24426 5.26765 5.32296 5.34182 5.38098 5.49694 5.51503 5.60104 5.62308 5.65342 5.67604 5.72652 5.82507 5.90907 5.93039 5.96123 6.10173 6.13200 6.61448 7.18493 7.59408 7.70430 7.94532 8.35167 8.62351 9.23664 10.85937 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011411 B = 0.002039 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.285746 B =13730.965931 C =15415.904098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.123 4.123 3 H 0.117 0.883 4 C -0.148 4.148 5 C -0.194 4.194 6 H 0.122 0.878 7 C 0.542 3.458 8 O -0.539 6.539 9 N -0.722 5.722 10 C 0.156 3.844 11 C -0.141 4.141 12 C -0.091 4.091 13 C 0.123 3.877 14 N -0.740 5.740 15 C 0.530 3.470 16 O -0.516 6.516 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C -0.167 4.167 28 C -0.158 4.158 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.401 0.599 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.098 0.902 46 H 0.096 0.904 47 H 0.099 0.901 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.970 3.136 -17.471 30.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 H 0.135 0.865 4 C -0.185 4.185 5 C -0.215 4.215 6 H 0.140 0.860 7 C 0.329 3.671 8 O -0.416 6.416 9 N -0.374 5.374 10 C 0.032 3.968 11 C -0.142 4.142 12 C -0.129 4.129 13 C -0.001 4.001 14 N -0.395 5.395 15 C 0.316 3.684 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.205 4.205 28 C -0.196 4.196 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.236 0.764 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.230 0.770 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.118 0.882 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -23.602 5.884 -17.167 29.772 hybrid contribution -0.666 -3.261 0.319 3.343 sum -24.268 2.623 -16.848 29.659 Atomic orbital electron populations 1.21405 0.92194 1.02348 1.02125 1.22387 0.95221 0.95138 1.01368 0.86461 1.23140 1.03374 1.01452 0.90528 1.22293 0.97654 1.05486 0.96050 0.85991 1.19687 0.84715 0.84652 0.78095 1.90719 1.68521 1.21150 1.61211 1.45843 1.24488 1.13558 1.53463 1.20846 0.85046 0.94310 0.96558 1.21532 1.05601 0.97445 0.89671 1.21283 0.98416 0.96579 0.96610 1.21216 0.96390 0.89984 0.92506 1.45994 1.38770 1.14162 1.40569 1.20310 0.78643 0.89771 0.79629 1.90712 1.54782 1.26104 1.67431 1.23527 1.05548 0.99614 1.01701 1.85426 1.38490 1.17582 1.41871 1.22863 1.23752 0.97427 1.24341 0.90943 1.24998 0.95006 0.97333 0.96300 1.70020 1.21382 1.27212 1.31626 0.86166 0.78627 0.81824 0.78859 1.20280 1.20741 1.19709 1.23101 0.97521 1.01818 0.98012 1.23054 0.94454 1.03004 0.99083 0.92301 0.91584 0.92015 0.87647 0.88018 0.76424 0.90334 0.91345 0.90684 0.90899 0.91650 0.91462 0.76973 0.89272 0.89271 0.92175 0.88390 0.88544 0.88247 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.19 37.16 0.38 -0.29 16 2 C -0.12 -0.94 5.92 -90.62 -0.54 -1.48 16 3 H 0.12 1.12 7.67 -51.93 -0.40 0.72 16 4 C -0.15 -1.09 9.88 -26.73 -0.26 -1.35 16 5 C -0.19 -1.45 5.91 -91.77 -0.54 -1.99 16 6 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 7 C 0.54 5.57 7.61 -10.99 -0.08 5.48 16 8 O -0.54 -7.85 16.26 5.56 0.09 -7.76 16 9 N -0.72 -5.62 5.40 -60.29 -0.33 -5.94 16 10 C 0.16 1.32 5.30 -4.04 -0.02 1.30 16 11 C -0.14 -0.93 1.57 -154.51 -0.24 -1.18 16 12 C -0.09 -0.64 5.10 -26.73 -0.14 -0.78 16 13 C 0.12 1.39 5.39 -4.04 -0.02 1.37 16 14 N -0.74 -9.63 5.56 -60.30 -0.33 -9.96 16 15 C 0.53 9.96 7.85 -10.99 -0.09 9.88 16 16 O -0.52 -11.98 15.86 5.55 0.09 -11.90 16 17 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 23 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 C -0.17 -0.88 9.95 -26.69 -0.27 -1.14 16 28 C -0.16 -1.00 9.95 -26.69 -0.27 -1.27 16 29 H 0.06 0.27 7.90 -51.93 -0.41 -0.14 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.11 0.59 8.05 -51.93 -0.42 0.17 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.40 2.12 7.91 -40.82 -0.32 1.80 16 35 H 0.08 0.85 7.17 -51.93 -0.37 0.48 16 36 H 0.07 0.60 8.11 -51.92 -0.42 0.18 16 37 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 38 H 0.07 0.45 7.53 -51.93 -0.39 0.05 16 39 H 0.07 0.86 7.26 -51.93 -0.38 0.49 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.40 3.86 8.47 -40.82 -0.35 3.51 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 44 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 417.35 15.07 6.29 6.29 Total: -1.00 -37.02 417.35 -10.43 -47.45 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.07 Total: 2.16 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -1.67 Total: -7.33 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.07 Total: -41.45 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: 0.18 Total: -19.66 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -37.02 -10.43 -47.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489048922.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.033 kcal (2) G-P(sol) polarization free energy of solvation -37.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds