Wall clock time and date at job start Sat Apr 11 2020 06:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 115.56012 * 2 1 4 4 C 1.53002 * 117.49901 * 145.68687 * 2 1 3 5 5 C 1.52994 * 117.50019 * 214.31107 * 2 1 3 6 6 H 1.08998 * 117.51508 * 359.97438 * 5 2 1 7 7 C 1.50699 * 117.50255 * 145.01899 * 5 2 1 8 8 O 1.21282 * 120.00086 * 0.02562 * 7 5 2 9 9 N 1.34774 * 119.99839 * 180.02562 * 7 5 2 10 10 C 1.46507 * 119.99831 * 180.02562 * 9 7 5 11 11 C 1.52999 * 109.47249 * 176.86984 * 10 9 7 12 12 C 1.52997 * 115.54968 * 297.21261 * 11 10 9 13 13 C 1.52996 * 109.47138 * 295.64399 * 12 11 10 14 14 N 1.46503 * 109.47233 * 185.08294 * 13 12 11 15 15 C 1.34774 * 120.00123 * 179.97438 * 14 13 12 16 16 O 1.21284 * 120.00002 * 0.02562 * 15 14 13 17 17 C 1.50694 * 120.00187 * 179.72597 * 15 14 13 18 18 S 1.80992 * 109.47412 * 180.27841 * 17 15 14 19 19 C 1.76201 * 100.00425 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99792 * 0.02562 * 19 18 17 21 21 C 1.38791 * 120.00211 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00201 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99891 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46909 * 90.00615 * 23 21 19 25 25 H 1.48502 * 109.47121 * 210.00124 * 23 21 19 26 26 H 1.48502 * 109.47092 * 330.00433 * 23 21 19 27 27 C 1.53009 * 117.49512 * 82.88115 * 11 10 9 28 28 C 1.53000 * 117.49556 * 151.53744 * 11 10 9 29 29 H 1.09005 * 109.47144 * 205.69607 * 1 2 3 30 30 H 1.09006 * 109.47116 * 325.69156 * 1 2 3 31 31 H 1.08998 * 109.47206 * 85.69015 * 1 2 3 32 32 H 1.09000 * 117.49690 * 359.97438 * 4 2 1 33 33 H 1.09007 * 117.51839 * 214.97375 * 4 2 1 34 34 H 0.96994 * 120.00644 * 0.02562 * 9 7 5 35 35 H 1.08994 * 109.47064 * 56.86765 * 10 9 7 36 36 H 1.09009 * 109.46827 * 296.87079 * 10 9 7 37 37 H 1.09002 * 109.47017 * 175.64644 * 12 11 10 38 38 H 1.09001 * 109.47417 * 55.65008 * 12 11 10 39 39 H 1.08999 * 109.47208 * 65.08346 * 13 12 11 40 40 H 1.09001 * 109.47064 * 305.08040 * 13 12 11 41 41 H 0.96999 * 119.99417 * 0.02562 * 14 13 12 42 42 H 1.08999 * 109.46861 * 300.27668 * 17 15 14 43 43 H 1.08999 * 109.47466 * 60.27586 * 17 15 14 44 44 H 0.97004 * 120.00028 * 179.97438 * 22 21 19 45 45 H 1.08999 * 117.49188 * 215.00377 * 27 11 10 46 46 H 1.08998 * 117.49690 * 0.02562 * 27 11 10 47 47 H 1.08998 * 117.50249 * 359.97438 * 28 11 10 48 48 H 1.09002 * 117.49622 * 144.97869 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2364 -1.1210 0.7650 5 6 2.2364 -1.1209 -0.7650 6 1 1.6115 -1.8588 -1.2680 7 6 3.5292 -0.7811 -1.4608 8 8 3.9720 0.3464 -1.4009 9 7 4.1933 -1.7302 -2.1498 10 6 5.4504 -1.3999 -2.8258 11 6 6.0342 -2.6628 -3.4625 12 6 6.4146 -3.7783 -2.4870 13 6 7.5475 -3.2968 -1.5785 14 7 7.9941 -4.4023 -0.7271 15 6 8.9908 -4.2100 0.1595 16 8 9.5177 -3.1216 0.2529 17 6 9.4459 -5.3454 1.0396 18 16 10.7822 -4.7743 2.1185 19 6 11.1105 -6.2578 3.0106 20 1 10.5410 -7.1512 2.8011 21 6 12.1018 -6.2787 3.9818 22 7 12.7964 -5.1900 4.2369 23 14 12.4494 -7.8514 4.9281 24 1 13.4817 -8.6424 4.2113 25 1 12.9411 -7.5126 6.2878 26 1 11.2017 -8.6493 5.0374 27 6 5.4952 -3.0765 -4.8335 28 6 6.9029 -2.4881 -4.7098 29 1 -0.3634 -0.9261 0.4456 30 1 -0.3634 0.8489 0.5793 31 1 -0.3633 0.0772 -1.0247 32 1 1.6112 -1.8582 1.2687 33 1 3.1716 -0.8755 1.2684 34 1 3.8391 -2.6318 -2.1980 35 1 6.1582 -0.9982 -2.1008 36 1 5.2620 -0.6563 -3.6002 37 1 6.7447 -4.6535 -3.0467 38 1 5.5484 -4.0409 -1.8796 39 1 7.1894 -2.4787 -0.9535 40 1 8.3806 -2.9495 -2.1895 41 1 7.5728 -5.2728 -0.8020 42 1 8.6102 -5.6909 1.6481 43 1 9.8061 -6.1651 0.4180 44 1 13.4889 -5.2045 4.9159 45 1 5.4117 -4.1434 -5.0403 46 1 4.7251 -2.4487 -5.2819 47 1 7.0583 -1.4737 -5.0770 48 1 7.7458 -3.1678 -4.8352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489048922.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:25 Heat of formation + Delta-G solvation = -68.368542 kcal Electronic energy + Delta-G solvation = -26158.283778 eV Core-core repulsion = 22339.276613 eV Total energy + Delta-G solvation = -3819.007165 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.22525 -40.64695 -39.49881 -37.71476 -35.97395 -35.17801 -34.58820 -32.15069 -30.08488 -29.75364 -28.17070 -27.66123 -24.63683 -24.53102 -23.15760 -21.89025 -21.81420 -21.11536 -20.16112 -19.69323 -18.41432 -17.79888 -17.33366 -17.05143 -16.88110 -16.82984 -16.54096 -16.11312 -15.87870 -15.46451 -15.28689 -14.85958 -14.77459 -14.66241 -14.36132 -14.14564 -13.83973 -13.67691 -13.60056 -13.17401 -13.15900 -12.94761 -12.89423 -12.66356 -12.57544 -12.34484 -12.33596 -12.18773 -11.73744 -11.39493 -11.25943 -11.14623 -11.14251 -11.03407 -10.89920 -10.66368 -10.27718 -10.19173 -10.08567 -8.67985 -8.34821 -6.13534 1.26517 1.42648 1.43565 1.47079 1.57324 1.59969 2.02020 2.25182 2.28677 2.80366 2.88501 2.99277 3.31586 3.59246 3.66429 3.73909 3.77831 3.81277 3.85547 3.93958 4.03181 4.17457 4.23705 4.25765 4.32843 4.40464 4.49829 4.56127 4.61946 4.71684 4.78706 4.83589 4.86023 4.93860 4.98377 5.03547 5.06734 5.08636 5.17398 5.20207 5.28582 5.36734 5.41350 5.41925 5.43496 6.19541 6.50901 6.52175 7.06204 7.21302 7.24765 8.74422 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011411 B = 0.002039 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.285746 B =13730.965931 C =15415.904098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.132 4.132 3 H 0.088 0.912 4 C -0.145 4.145 5 C -0.187 4.187 6 H 0.157 0.843 7 C 0.532 3.468 8 O -0.593 6.593 9 N -0.705 5.705 10 C 0.158 3.842 11 C -0.146 4.146 12 C -0.078 4.078 13 C 0.123 3.877 14 N -0.710 5.710 15 C 0.530 3.470 16 O -0.570 6.570 17 C -0.128 4.128 18 S -0.158 6.158 19 C -0.544 4.544 20 H 0.085 0.915 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.268 1.268 25 H -0.279 1.279 26 H -0.256 1.256 27 C -0.141 4.141 28 C -0.169 4.169 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.132 0.868 33 H 0.078 0.922 34 H 0.418 0.582 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.042 0.958 40 H 0.054 0.946 41 H 0.418 0.582 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.271 0.729 45 H 0.117 0.883 46 H 0.101 0.899 47 H 0.094 0.906 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.691 -0.627 -18.730 33.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.151 4.151 3 H 0.106 0.894 4 C -0.183 4.183 5 C -0.208 4.208 6 H 0.174 0.826 7 C 0.320 3.680 8 O -0.474 6.474 9 N -0.357 5.357 10 C 0.034 3.966 11 C -0.147 4.147 12 C -0.115 4.115 13 C 0.000 4.000 14 N -0.365 5.365 15 C 0.316 3.684 16 O -0.449 6.449 17 C -0.279 4.279 18 S 0.069 5.931 19 C -0.692 4.692 20 H 0.103 0.897 21 C -0.194 4.194 22 N -0.549 5.549 23 Si 0.822 3.178 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.180 1.180 27 C -0.178 4.178 28 C -0.207 4.207 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.150 0.850 33 H 0.096 0.904 34 H 0.255 0.745 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.256 0.744 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.080 0.920 45 H 0.135 0.865 46 H 0.120 0.880 47 H 0.113 0.887 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -26.383 2.045 -18.477 32.274 hybrid contribution 0.133 -2.016 0.600 2.108 sum -26.250 0.029 -17.877 31.759 Atomic orbital electron populations 1.21390 0.90030 1.03290 1.02726 1.22402 0.96777 0.93974 1.01942 0.89409 1.23176 1.02736 1.01891 0.90450 1.22385 0.96447 1.06010 0.95973 0.82551 1.20305 0.85573 0.84177 0.77907 1.90696 1.70036 1.23468 1.63208 1.45733 1.23776 1.13928 1.52248 1.20721 0.84770 0.95453 0.95649 1.21366 1.06729 0.96494 0.90124 1.21227 0.97097 0.97119 0.96096 1.21314 0.97505 0.88987 0.92230 1.45707 1.36512 1.15693 1.38559 1.20145 0.79502 0.88494 0.80261 1.90704 1.57026 1.27885 1.69256 1.23363 1.03200 1.00395 1.00944 1.85660 1.42807 1.19960 1.44628 1.23201 1.24098 0.97439 1.24489 0.89714 1.26172 0.94575 1.01289 0.97346 1.70195 1.22188 1.29978 1.32519 0.84928 0.79065 0.76834 0.76979 1.19268 1.20413 1.18011 1.23162 0.96448 1.02908 0.95300 1.23130 0.95500 1.03190 0.98881 0.90658 0.91478 0.91431 0.84998 0.90374 0.74501 0.93555 0.91917 0.88393 0.89127 0.93983 0.92788 0.74413 0.87075 0.86933 0.92028 0.86477 0.88038 0.88705 0.87717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 10.19 71.98 0.73 -0.34 16 2 C -0.13 -2.01 5.92 -10.80 -0.06 -2.07 16 3 H 0.09 1.85 7.67 -2.38 -0.02 1.83 16 4 C -0.15 -2.02 9.88 30.60 0.30 -1.72 16 5 C -0.19 -2.57 5.91 -11.54 -0.07 -2.63 16 6 H 0.16 1.04 8.14 -2.39 -0.02 1.02 16 7 C 0.53 11.05 7.61 87.66 0.67 11.72 16 8 O -0.59 -18.53 16.26 -3.04 -0.05 -18.58 16 9 N -0.71 -10.32 5.40 -463.05 -2.50 -12.82 16 10 C 0.16 2.70 5.30 86.38 0.46 3.16 16 11 C -0.15 -1.66 1.57 -52.18 -0.08 -1.74 16 12 C -0.08 -0.87 5.10 30.59 0.16 -0.71 16 13 C 0.12 2.70 5.39 86.38 0.47 3.16 16 14 N -0.71 -17.14 5.56 -463.06 -2.57 -19.71 16 15 C 0.53 19.73 7.85 87.66 0.69 20.41 16 16 O -0.57 -27.42 15.86 -3.04 -0.05 -27.47 16 17 C -0.13 -5.02 6.16 71.23 0.44 -4.59 16 18 S -0.16 -8.86 20.57 -56.49 -1.16 -10.02 16 19 C -0.54 -31.11 9.50 67.95 0.65 -30.46 16 20 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 21 C 0.01 0.61 5.49 84.86 0.47 1.08 16 22 N -0.91 -56.54 13.22 21.65 0.29 -56.25 16 23 Si 1.00 43.53 29.55 68.60 2.03 45.55 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 26 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 27 C -0.14 -1.01 9.95 30.62 0.30 -0.70 16 28 C -0.17 -1.87 9.95 30.62 0.30 -1.56 16 29 H 0.07 0.46 7.90 -2.38 -0.02 0.44 16 30 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.13 1.13 8.05 -2.39 -0.02 1.11 16 33 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.42 3.27 7.91 -92.71 -0.73 2.53 16 35 H 0.05 1.10 7.17 -2.39 -0.02 1.08 16 36 H 0.06 1.14 8.11 -2.38 -0.02 1.12 16 37 H 0.10 0.75 8.10 -2.39 -0.02 0.73 16 38 H 0.09 0.74 7.53 -2.39 -0.02 0.72 16 39 H 0.04 1.14 7.26 -2.39 -0.02 1.13 16 40 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.42 6.59 8.47 -92.71 -0.79 5.80 16 42 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 43 H 0.11 3.90 8.14 -2.40 -0.02 3.89 16 44 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 45 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -86.71 417.35 0.84 -85.87 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -0.55 Total: 20.44 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 5.42 Total: -7.01 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -4.79 Total: -88.79 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -0.10 Total: -46.05 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.16 Total: -10.02 kcal Total: -86.71 0.84 -85.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489048922.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.497 kcal (2) G-P(sol) polarization free energy of solvation -86.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds