Wall clock time and date at job start Sat Apr 11 2020 06:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.05335 * 2 1 4 4 C 1.53867 * 110.03554 * 238.57609 * 2 1 3 5 5 C 1.54262 * 106.60370 * 240.71627 * 4 2 1 6 6 C 1.54895 * 104.19393 * 336.39087 * 5 4 2 7 7 C 1.54270 * 110.02974 * 121.40911 * 2 1 3 8 8 H 1.08994 * 110.60378 * 24.16262 * 7 2 1 9 9 C 1.53001 * 110.48513 * 261.57243 * 7 2 1 10 10 C 1.50702 * 109.46779 * 178.77314 * 9 7 2 11 11 O 1.21289 * 120.00408 * 0.02562 * 10 9 7 12 12 N 1.34776 * 119.99938 * 180.02562 * 10 9 7 13 13 C 1.46505 * 120.00122 * 180.02562 * 12 10 9 14 14 C 1.53502 * 114.20456 * 204.99938 * 13 12 10 15 15 N 1.47070 * 87.97873 * 220.33994 * 14 13 12 16 16 C 1.34777 * 136.05212 * 207.07785 * 15 14 13 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99675 * 179.73146 * 16 15 14 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00336 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99494 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47141 * 90.00156 * 24 22 20 26 26 H 1.48505 * 109.47177 * 209.99950 * 24 22 20 27 27 H 1.48496 * 109.47259 * 329.99923 * 24 22 20 28 28 C 1.47062 * 87.88674 * 27.34302 * 15 14 13 29 29 H 1.09000 * 109.47359 * 298.58877 * 1 2 3 30 30 H 1.08993 * 109.46784 * 58.59162 * 1 2 3 31 31 H 1.08999 * 109.46703 * 178.59061 * 1 2 3 32 32 H 1.09002 * 110.03030 * 121.43214 * 4 2 1 33 33 H 1.08997 * 110.07443 * 0.02562 * 4 2 1 34 34 H 1.08998 * 110.49195 * 217.71542 * 5 4 2 35 35 H 1.08996 * 110.60161 * 95.11875 * 5 4 2 36 36 H 1.09000 * 110.75247 * 279.62656 * 6 5 4 37 37 H 1.09000 * 110.75717 * 156.25552 * 6 5 4 38 38 H 1.09006 * 109.47111 * 58.77921 * 9 7 2 39 39 H 1.08996 * 109.47590 * 298.77329 * 9 7 2 40 40 H 0.97003 * 120.00085 * 359.97438 * 12 10 9 41 41 H 1.09000 * 113.41170 * 338.19237 * 13 12 10 42 42 H 1.08996 * 113.46716 * 105.56389 * 14 13 12 43 43 H 1.08990 * 113.52038 * 335.12870 * 14 13 12 44 44 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 45 45 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 46 46 H 0.97003 * 119.99714 * 180.02562 * 23 22 20 47 47 H 1.08998 * 113.46736 * 87.43474 * 28 15 14 48 48 H 1.08998 * 113.46422 * 217.87103 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0572 -0.7537 -1.2335 5 6 2.8875 -1.9407 -0.7033 6 6 3.3137 -1.5006 0.7194 7 6 2.0584 -0.7553 1.2370 8 1 1.3153 -1.4657 1.5990 9 6 2.4392 0.2300 2.3438 10 6 2.9232 -0.5324 3.5503 11 8 2.9605 -1.7444 3.5271 12 7 3.3147 0.1327 4.6552 13 6 3.7858 -0.6083 5.8279 14 6 3.6250 0.1457 7.1553 15 7 4.9446 -0.3709 7.5486 16 6 5.5689 -0.6553 8.7088 17 8 4.9966 -0.4819 9.7639 18 6 6.9759 -1.1949 8.6946 19 16 7.5293 -1.4816 10.3939 20 6 9.1533 -2.0927 10.0880 21 1 9.5129 -2.1864 9.0739 22 6 9.9710 -2.4528 11.1502 23 7 11.1844 -2.9088 10.9216 24 14 9.3493 -2.2900 12.9042 25 1 8.6832 -3.5528 13.3124 26 1 10.4931 -2.0181 13.8115 27 1 8.3777 -1.1699 12.9831 28 6 5.2854 -0.4344 6.1195 29 1 -0.3634 0.4917 0.9024 30 1 -0.3632 0.5355 -0.8770 31 1 -0.3633 -1.0274 -0.0253 32 1 2.6868 -0.0955 -1.8323 33 1 1.2236 -1.1194 -1.8330 34 1 3.7639 -2.1038 -1.3306 35 1 2.2792 -2.8439 -0.6569 36 1 4.1710 -0.8290 0.6753 37 1 3.5325 -2.3677 1.3426 38 1 1.5675 0.8254 2.6159 39 1 3.2318 0.8880 1.9877 40 1 3.2853 1.1021 4.6738 41 1 3.4386 -1.6412 5.8558 42 1 2.8096 -0.2312 7.7726 43 1 3.5999 1.2292 7.0397 44 1 6.9994 -2.1340 8.1416 45 1 7.6370 -0.4737 8.2141 46 1 11.7556 -3.1607 11.6639 47 1 5.6981 0.4961 5.7299 48 1 5.8845 -1.3055 5.8544 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498229293.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:45 Heat of formation + Delta-G solvation = -56.192890 kcal Electronic energy + Delta-G solvation = -26304.174786 eV Core-core repulsion = 22485.695597 eV Total energy + Delta-G solvation = -3818.479189 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.92639 -39.91040 -38.54791 -37.57988 -34.17618 -32.45166 -32.06515 -31.57162 -30.44310 -28.03593 -26.57239 -26.18045 -25.59928 -24.88905 -22.21357 -21.17637 -20.65012 -19.89518 -19.18827 -17.78144 -17.32298 -17.09836 -16.71948 -15.90749 -15.83001 -15.45766 -15.15952 -14.92929 -14.86047 -14.30306 -14.13265 -13.94787 -13.62325 -13.49376 -13.24015 -13.08529 -12.94788 -12.79796 -12.70397 -12.58460 -12.27345 -11.95931 -11.42559 -11.34274 -11.31478 -11.26815 -11.10122 -11.01706 -10.98704 -10.89360 -10.76604 -10.63906 -10.12359 -9.87049 -9.64502 -9.40948 -9.01670 -8.79629 -8.52833 -6.94448 -6.29878 -4.02307 2.27095 2.35834 2.74332 2.92077 3.18931 3.32696 3.49506 3.55787 3.98711 4.10015 4.18344 4.27564 4.31514 4.40522 4.50503 4.65657 4.75600 4.81526 4.84286 4.93038 4.99228 5.01610 5.09117 5.12669 5.13230 5.14542 5.23570 5.28971 5.30617 5.41888 5.42547 5.51333 5.59370 5.61875 5.67091 5.73962 5.76153 5.77978 5.80126 5.97262 5.99288 6.02633 6.10839 6.13815 7.07048 7.66053 7.86341 7.93075 8.33392 8.40719 9.16025 10.79266 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025685 B = 0.001720 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.857703 B =16273.342238 C =17108.999219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.121 4.121 5 C -0.126 4.126 6 C -0.119 4.119 7 C -0.072 4.072 8 H 0.083 0.917 9 C -0.134 4.134 10 C 0.515 3.485 11 O -0.529 6.529 12 N -0.721 5.721 13 C 0.111 3.889 14 C 0.098 3.902 15 N -0.648 5.648 16 C 0.565 3.435 17 O -0.513 6.513 18 C -0.116 4.116 19 S -0.141 6.141 20 C -0.522 4.522 21 H 0.089 0.911 22 C 0.096 3.904 23 N -0.879 5.879 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.086 3.914 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.403 0.597 41 H 0.133 0.867 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.271 0.729 47 H 0.087 0.913 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.159 9.782 -25.503 34.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.090 0.910 4 C -0.159 4.159 5 C -0.164 4.164 6 C -0.156 4.156 7 C -0.091 4.091 8 H 0.102 0.898 9 C -0.174 4.174 10 C 0.302 3.698 11 O -0.405 6.405 12 N -0.373 5.373 13 C 0.004 3.996 14 C -0.027 4.027 15 N -0.388 5.388 16 C 0.355 3.645 17 O -0.387 6.387 18 C -0.266 4.266 19 S 0.085 5.915 20 C -0.669 4.669 21 H 0.107 0.893 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.039 4.039 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.238 0.762 41 H 0.151 0.849 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.105 0.895 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.686 9.021 -23.650 33.331 hybrid contribution 0.811 0.396 -0.439 1.003 sum -20.875 9.417 -24.088 33.237 Atomic orbital electron populations 1.21896 0.95002 1.01898 1.01498 1.21817 0.95659 0.99333 0.94447 0.90976 1.22217 0.99428 0.97149 0.97056 1.22353 0.99454 0.97945 0.96638 1.22581 0.96589 1.00735 0.95713 1.21840 0.98374 0.96087 0.92811 0.89819 1.21783 1.02762 0.99271 0.93613 1.20806 0.76523 0.88482 0.83965 1.90727 1.53289 1.14056 1.82397 1.45876 1.67143 1.10282 1.14011 1.22892 0.94221 0.98561 0.83896 1.23216 0.87439 0.98992 0.93020 1.49287 1.17057 1.66794 1.05622 1.19886 0.87142 0.76530 0.80949 1.90722 1.66578 1.52287 1.29099 1.23217 0.94073 1.04161 1.05144 1.84784 1.18249 1.85439 1.02996 1.22300 0.97169 1.49678 0.97789 0.89342 1.24706 0.93988 0.93254 0.99304 1.69938 1.07414 1.41540 1.32681 0.86736 0.79931 0.81087 0.84103 1.19161 1.19886 1.15949 1.23551 0.97428 1.02989 0.79946 0.92745 0.92784 0.92535 0.91998 0.91839 0.91863 0.91717 0.91981 0.90197 0.88830 0.88691 0.76210 0.84918 0.89672 0.89753 0.88402 0.88483 0.91911 0.89515 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 8.84 37.16 0.33 -0.34 16 2 C -0.09 -0.46 3.07 -89.50 -0.27 -0.74 16 3 H 0.07 0.30 7.84 -51.93 -0.41 -0.10 16 4 C -0.12 -0.64 6.45 -25.62 -0.17 -0.81 16 5 C -0.13 -0.81 6.83 -25.07 -0.17 -0.98 16 6 C -0.12 -0.87 5.63 -24.73 -0.14 -1.01 16 7 C -0.07 -0.45 2.01 -88.96 -0.18 -0.63 16 8 H 0.08 0.65 7.73 -51.93 -0.40 0.25 16 9 C -0.13 -0.64 5.06 -27.88 -0.14 -0.78 16 10 C 0.52 3.95 7.61 -10.98 -0.08 3.87 16 11 O -0.53 -6.26 14.10 5.55 0.08 -6.18 16 12 N -0.72 -4.30 5.38 -53.48 -0.29 -4.58 16 13 C 0.11 0.94 4.62 -67.68 -0.31 0.62 16 14 C 0.10 0.93 8.38 -8.50 -0.07 0.86 16 15 N -0.65 -8.72 3.69 -185.08 -0.68 -9.40 16 16 C 0.57 10.51 8.10 -10.98 -0.09 10.42 16 17 O -0.51 -11.45 16.64 5.55 0.09 -11.36 16 18 C -0.12 -2.31 5.98 36.01 0.22 -2.09 16 19 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 20 C -0.52 -15.15 10.04 30.94 0.31 -14.84 16 21 H 0.09 2.68 8.03 -52.48 -0.42 2.25 16 22 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 23 N -0.88 -26.61 13.97 55.49 0.78 -25.83 16 24 Si 0.86 21.88 27.74 -169.99 -4.72 17.16 16 25 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 28 C 0.09 0.83 8.24 -8.37 -0.07 0.76 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.43 8.02 -51.93 -0.42 0.01 16 37 H 0.08 0.77 7.06 -51.93 -0.37 0.40 16 38 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.09 0.31 8.10 -51.93 -0.42 -0.11 16 40 H 0.40 1.20 8.76 -40.82 -0.36 0.84 16 41 H 0.13 1.38 7.45 -51.93 -0.39 0.99 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.08 0.61 8.13 -51.93 -0.42 0.19 16 44 H 0.10 1.85 8.14 -51.91 -0.42 1.43 16 45 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 46 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 402.19 15.07 6.06 6.06 Total: -1.00 -36.05 402.19 -9.84 -45.88 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -8.23 Total: -3.19 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -0.94 Total: -2.94 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: -0.20 Total: -39.82 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.17 Total: -17.54 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.72 Total: 17.16 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.05 -9.84 -45.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498229293.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.309 kcal (2) G-P(sol) polarization free energy of solvation -36.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds