Wall clock time and date at job start Sat Apr 11 2020 06:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09000 * 110.05191 * 2 1 4 4 C 1.54264 * 110.03367 * 121.42260 * 2 1 3 5 5 C 1.54887 * 104.19565 * 142.89232 * 4 2 1 6 6 C 1.54892 * 102.74974 * 322.05823 * 5 4 2 7 7 C 1.53877 * 110.02794 * 238.59074 * 2 1 3 8 8 H 1.09000 * 110.03027 * 121.38509 * 7 2 1 9 9 C 1.52991 * 110.03539 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.47249 * 174.99984 * 9 7 2 11 11 O 1.21282 * 119.99958 * 0.02562 * 10 9 7 12 12 N 1.34777 * 120.00149 * 179.97438 * 10 9 7 13 13 C 1.46498 * 119.99904 * 180.02562 * 12 10 9 14 14 C 1.53497 * 114.20697 * 205.00428 * 13 12 10 15 15 N 1.47065 * 87.98429 * 220.34372 * 14 13 12 16 16 C 1.34779 * 136.05811 * 207.07847 * 15 14 13 17 17 O 1.21282 * 119.99922 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00037 * 180.02562 * 16 15 14 19 19 S 1.81000 * 109.46881 * 180.02562 * 18 16 15 20 20 C 1.76206 * 99.99929 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99720 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99847 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00398 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99778 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46907 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47393 * 119.99621 * 24 22 20 27 27 H 1.48503 * 109.46784 * 240.00115 * 24 22 20 28 28 C 1.47066 * 87.88410 * 27.34360 * 15 14 13 29 29 H 1.08999 * 109.47005 * 181.41366 * 1 2 3 30 30 H 1.09003 * 109.46807 * 301.41051 * 1 2 3 31 31 H 1.08998 * 109.46860 * 61.40896 * 1 2 3 32 32 H 1.09003 * 110.48420 * 261.57593 * 4 2 1 33 33 H 1.09004 * 110.48637 * 24.08572 * 4 2 1 34 34 H 1.09001 * 110.75286 * 80.37174 * 5 4 2 35 35 H 1.08994 * 110.75592 * 203.73812 * 5 4 2 36 36 H 1.08995 * 110.48570 * 279.26214 * 6 5 4 37 37 H 1.09004 * 110.48234 * 156.61952 * 6 5 4 38 38 H 1.09003 * 109.47252 * 55.00443 * 9 7 2 39 39 H 1.09002 * 109.47549 * 295.00470 * 9 7 2 40 40 H 0.96999 * 120.00020 * 0.02562 * 12 10 9 41 41 H 1.08999 * 113.41535 * 338.20409 * 13 12 10 42 42 H 1.09000 * 113.46875 * 105.56575 * 14 13 12 43 43 H 1.08994 * 113.52028 * 335.13228 * 14 13 12 44 44 H 1.09000 * 109.47247 * 60.00371 * 18 16 15 45 45 H 1.09001 * 109.47358 * 299.99798 * 18 16 15 46 46 H 0.96996 * 120.00393 * 180.02562 * 23 22 20 47 47 H 1.08999 * 113.47035 * 87.44205 * 28 15 14 48 48 H 1.09008 * 113.46326 * 217.87884 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0586 -0.7556 1.2367 5 6 3.3137 -1.5008 0.7189 6 6 2.8875 -1.9406 -0.7038 7 6 2.0571 -0.7534 -1.2339 8 1 2.6860 -0.0949 -1.8330 9 6 0.8862 -1.2672 -2.0739 10 6 1.4127 -1.8945 -3.3390 11 8 2.6069 -1.9279 -3.5478 12 7 0.5565 -2.4194 -4.2378 13 6 1.0684 -3.0298 -5.4673 14 6 0.0682 -3.0339 -6.6316 15 7 0.5318 -4.3911 -6.9570 16 6 0.6020 -5.1527 -8.0667 17 8 0.2136 -4.7142 -9.1287 18 6 1.1632 -6.5491 -7.9881 19 16 1.1243 -7.3083 -9.6307 20 6 1.8155 -8.8851 -9.2554 21 1 2.1128 -9.1173 -8.2434 22 6 1.9788 -9.8282 -10.2605 23 7 1.6170 -9.5450 -11.4939 24 14 2.7110 -11.5001 -9.8625 25 1 3.0321 -11.5677 -8.4142 26 1 1.7317 -12.5631 -10.2030 27 1 3.9518 -11.6981 -10.6539 28 6 0.8790 -4.5540 -5.5372 29 1 -0.3633 -1.0273 0.0254 30 1 -0.3633 0.5356 0.8771 31 1 -0.3633 0.4918 -0.9023 32 1 2.3298 -0.0537 2.0254 33 1 1.3135 -1.4645 1.5979 34 1 4.1710 -0.8291 0.6749 35 1 3.5326 -2.3679 1.3420 36 1 2.2772 -2.8425 -0.6575 37 1 3.7638 -2.1036 -1.3312 38 1 0.2284 -0.4357 -2.3273 39 1 0.3289 -2.0108 -1.5042 40 1 -0.3986 -2.3931 -4.0707 41 1 2.0673 -2.6874 -5.7375 42 1 0.2980 -2.2999 -7.4040 43 1 -0.9728 -2.9961 -6.3109 44 1 0.5636 -7.1433 -7.2985 45 1 2.1924 -6.5075 -7.6317 46 1 1.7308 -10.2042 -12.1963 47 1 0.0520 -4.9171 -4.9270 48 1 1.7997 -5.1151 -5.3771 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498229295.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:49 Heat of formation + Delta-G solvation = -50.975517 kcal Electronic energy + Delta-G solvation = -26403.469154 eV Core-core repulsion = 22585.216207 eV Total energy + Delta-G solvation = -3818.252946 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.90659 -39.97005 -38.56119 -37.48004 -34.13496 -32.44299 -32.31207 -31.29202 -30.30635 -27.93719 -26.28313 -26.09374 -25.45629 -25.28556 -22.22254 -21.20324 -20.96029 -19.20194 -18.87323 -17.76611 -17.70003 -16.98078 -16.66338 -16.14802 -15.73731 -15.33279 -15.12692 -14.81502 -14.76585 -14.25317 -14.21169 -13.95102 -13.76572 -13.49936 -12.96518 -12.95015 -12.87504 -12.73890 -12.63525 -12.48803 -12.32697 -11.83372 -11.35514 -11.30209 -11.17588 -11.10011 -11.07654 -11.06526 -11.02294 -10.90667 -10.77029 -10.67132 -10.10625 -9.82945 -9.54077 -9.35354 -9.08659 -8.70559 -8.25932 -6.52378 -6.22962 -3.94009 2.30555 2.47093 2.86990 3.10543 3.21173 3.26006 3.30827 3.55349 4.04019 4.10988 4.17468 4.18896 4.25898 4.49820 4.52704 4.75201 4.82069 4.86672 4.88953 4.90305 4.98880 5.08417 5.12411 5.15811 5.16644 5.21899 5.33413 5.39417 5.41042 5.43199 5.50711 5.53381 5.54259 5.63335 5.64972 5.77369 5.78454 5.86275 5.90568 5.99533 6.01019 6.11007 6.12323 6.14732 7.10932 7.58978 7.76418 7.89762 8.34426 8.46698 9.22464 10.84576 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019656 B = 0.001774 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.150622 B =15782.603162 C =16854.701484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 H 0.072 0.928 4 C -0.121 4.121 5 C -0.128 4.128 6 C -0.114 4.114 7 C -0.072 4.072 8 H 0.080 0.920 9 C -0.137 4.137 10 C 0.513 3.487 11 O -0.531 6.531 12 N -0.721 5.721 13 C 0.110 3.890 14 C 0.097 3.903 15 N -0.650 5.650 16 C 0.566 3.434 17 O -0.511 6.511 18 C -0.144 4.144 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.074 0.926 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.279 1.279 28 C 0.087 3.913 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.403 0.597 41 H 0.132 0.868 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.268 0.732 47 H 0.085 0.915 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.573 20.080 27.418 34.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 H 0.090 0.910 4 C -0.158 4.158 5 C -0.166 4.166 6 C -0.151 4.151 7 C -0.091 4.091 8 H 0.098 0.902 9 C -0.177 4.177 10 C 0.300 3.700 11 O -0.406 6.406 12 N -0.373 5.373 13 C 0.004 3.996 14 C -0.027 4.027 15 N -0.389 5.389 16 C 0.356 3.644 17 O -0.384 6.384 18 C -0.295 4.295 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.092 0.908 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.746 3.254 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.205 1.205 28 C -0.038 4.038 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.237 0.763 41 H 0.150 0.850 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.078 0.922 47 H 0.103 0.897 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.275 20.498 25.264 32.698 hybrid contribution 0.271 -1.674 1.536 2.288 sum -3.004 18.823 26.800 32.887 Atomic orbital electron populations 1.22031 0.95172 1.01890 1.01639 1.21813 0.95648 0.99386 0.94478 0.90951 1.22454 0.97505 0.98907 0.96940 1.22516 0.97600 0.99851 0.96604 1.22396 1.00183 0.96975 0.95578 1.21567 0.95119 0.97372 0.95071 0.90167 1.22019 1.00125 1.01716 0.93803 1.20910 0.86753 0.77491 0.84889 1.90726 1.15646 1.56960 1.77301 1.45880 1.10320 1.60639 1.20462 1.22903 1.00051 0.92723 0.83943 1.23200 0.98090 0.85685 0.95753 1.49350 1.65311 1.16453 1.07791 1.19935 0.77330 0.85867 0.81245 1.90725 1.47409 1.72836 1.27441 1.23476 1.03448 0.94246 1.08315 1.85403 1.82734 1.13613 1.01586 1.22898 1.48026 0.99619 0.97758 0.90828 1.24996 0.95204 0.98961 0.94423 1.70022 1.44694 1.35153 1.00382 0.86104 0.78730 0.82026 0.78565 1.19597 1.20543 1.20524 1.23515 1.01541 0.96887 0.81888 0.92254 0.92878 0.92338 0.91940 0.91568 0.91581 0.91708 0.92066 0.90730 0.88447 0.88548 0.76250 0.84978 0.89708 0.89848 0.89245 0.89129 0.92199 0.89675 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 7.88 37.16 0.29 -0.26 16 2 C -0.09 -0.47 3.50 -89.50 -0.31 -0.78 16 3 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 4 C -0.12 -0.62 6.36 -25.07 -0.16 -0.77 16 5 C -0.13 -0.78 6.91 -24.74 -0.17 -0.96 16 6 C -0.11 -0.84 5.43 -25.07 -0.14 -0.97 16 7 C -0.07 -0.46 2.55 -89.50 -0.23 -0.69 16 8 H 0.08 0.64 7.92 -51.93 -0.41 0.23 16 9 C -0.14 -0.68 3.88 -27.89 -0.11 -0.79 16 10 C 0.51 4.10 7.61 -10.98 -0.08 4.01 16 11 O -0.53 -6.46 14.42 5.56 0.08 -6.38 16 12 N -0.72 -4.58 5.38 -53.49 -0.29 -4.87 16 13 C 0.11 0.99 4.62 -67.68 -0.31 0.68 16 14 C 0.10 0.99 8.38 -8.51 -0.07 0.92 16 15 N -0.65 -9.25 3.69 -185.09 -0.68 -9.93 16 16 C 0.57 11.12 8.10 -10.99 -0.09 11.03 16 17 O -0.51 -12.06 16.64 5.56 0.09 -11.96 16 18 C -0.14 -3.02 5.98 36.01 0.22 -2.81 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 20 C -0.53 -15.38 9.50 30.94 0.29 -15.08 16 21 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 24 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 28 C 0.09 0.89 8.24 -8.38 -0.07 0.82 16 29 H 0.06 0.20 6.85 -51.93 -0.36 -0.16 16 30 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.18 6.62 -51.93 -0.34 -0.16 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.32 7.83 -51.93 -0.41 -0.09 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.45 7.76 -51.93 -0.40 0.04 16 37 H 0.07 0.70 7.66 -51.93 -0.40 0.31 16 38 H 0.10 0.32 6.42 -51.93 -0.33 -0.02 16 39 H 0.10 0.35 6.91 -51.93 -0.36 -0.01 16 40 H 0.40 1.36 8.76 -40.82 -0.36 1.00 16 41 H 0.13 1.44 7.45 -51.93 -0.39 1.06 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.08 0.66 8.13 -51.93 -0.42 0.24 16 44 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 45 H 0.09 1.78 8.14 -51.91 -0.42 1.36 16 46 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 LS Contribution 399.08 15.07 6.01 6.01 Total: -1.00 -36.55 399.08 -10.27 -46.82 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -7.95 Total: -3.17 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -1.04 Total: -3.62 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: -0.24 Total: -40.35 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: 0.17 Total: -18.34 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.55 -10.27 -46.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498229295.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.156 kcal (2) G-P(sol) polarization free energy of solvation -36.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds