Wall clock time and date at job start Sat Apr 11 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.52485 * 2 1 4 4 C 1.53047 * 109.49660 * 120.08251 * 2 1 3 5 5 C 1.53043 * 109.53725 * 58.58862 * 4 2 1 6 6 C 1.53186 * 109.31321 * 61.36239 * 5 4 2 7 7 N 1.46959 * 108.89244 * 305.44406 * 6 5 4 8 8 C 1.34780 * 120.65157 * 233.53960 * 7 6 5 9 9 O 1.21283 * 119.99725 * 185.19942 * 8 7 6 10 10 C 1.50698 * 120.00350 * 5.20023 * 8 7 6 11 11 S 1.80994 * 109.46989 * 179.97438 * 10 8 7 12 12 C 1.76211 * 99.99884 * 179.97438 * 11 10 8 13 13 H 1.08004 * 119.99468 * 0.02562 * 12 11 10 14 14 C 1.38793 * 120.00004 * 180.02562 * 12 11 10 15 15 N 1.31636 * 120.00221 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99928 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47131 * 89.99708 * 16 14 12 18 18 H 1.48501 * 109.46858 * 209.99451 * 16 14 12 19 19 H 1.48496 * 109.47251 * 329.99620 * 16 14 12 20 20 C 1.46921 * 118.71475 * 53.35351 * 7 6 5 21 21 H 1.08999 * 109.58728 * 66.50555 * 20 7 6 22 22 C 1.52998 * 109.58828 * 186.78634 * 20 7 6 23 23 N 1.46497 * 109.47509 * 177.79440 * 22 20 7 24 24 C 1.34778 * 120.00619 * 175.06408 * 23 22 20 25 25 O 1.21286 * 119.99363 * 359.97438 * 24 23 22 26 26 C 1.50690 * 120.00311 * 179.97438 * 24 23 22 27 27 C 1.53008 * 117.50062 * 179.97438 * 26 24 23 28 28 C 1.52999 * 60.03360 * 252.52336 * 27 26 24 29 29 H 1.08999 * 109.47279 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47230 * 300.08012 * 1 2 3 31 31 H 1.09001 * 109.47455 * 60.07746 * 1 2 3 32 32 H 1.09004 * 109.45528 * 178.60650 * 4 2 1 33 33 H 1.09001 * 109.46056 * 298.56505 * 4 2 1 34 34 H 1.08994 * 109.49485 * 181.31930 * 5 4 2 35 35 H 1.09003 * 109.49289 * 301.40737 * 5 4 2 36 36 H 1.09001 * 109.58665 * 65.15368 * 6 5 4 37 37 H 1.09004 * 109.58495 * 185.43291 * 6 5 4 38 38 H 1.09001 * 109.47178 * 300.00291 * 10 8 7 39 39 H 1.09006 * 109.46793 * 60.00142 * 10 8 7 40 40 H 0.96993 * 119.99777 * 180.02562 * 15 14 12 41 41 H 1.09003 * 109.47257 * 57.78965 * 22 20 7 42 42 H 1.09002 * 109.47066 * 297.79232 * 22 20 7 43 43 H 0.97003 * 119.99619 * 355.05915 * 23 22 20 44 44 H 1.08999 * 115.56280 * 325.68518 * 26 24 23 45 45 H 1.08999 * 117.49711 * 145.01729 * 27 26 24 46 46 H 1.09000 * 117.49071 * 0.02932 * 27 26 24 47 47 H 1.08999 * 117.49878 * 107.47807 * 28 27 26 48 48 H 1.09002 * 117.49720 * 252.47274 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0407 -0.7232 1.2484 5 6 1.5029 -2.1559 1.2659 6 6 2.0139 -2.9040 0.0307 7 7 1.6543 -2.1390 -1.1715 8 6 0.9793 -2.7232 -2.1813 9 8 0.7710 -2.1095 -3.2064 10 6 0.4835 -4.1389 -2.0366 11 16 -0.3783 -4.6338 -3.5494 12 6 -0.8367 -6.2791 -3.1160 13 1 -0.5682 -6.6774 -2.1486 14 6 -1.5428 -7.0631 -4.0177 15 7 -1.8705 -6.5774 -5.1965 16 14 -2.0295 -8.8070 -3.5580 17 1 -3.3637 -8.7931 -2.9062 18 1 -2.0858 -9.6444 -4.7831 19 1 -1.0259 -9.3699 -2.6194 20 6 2.0412 -0.7238 -1.2496 21 1 3.1272 -0.6441 -1.2994 22 6 1.4228 -0.0912 -2.4978 23 7 1.7666 1.3321 -2.5454 24 6 1.4127 2.0757 -3.6123 25 8 0.8100 1.5663 -4.5334 26 6 1.7659 3.5398 -3.6609 27 6 1.3369 4.3294 -4.8994 28 6 2.8116 3.9809 -4.6882 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5151 0.8893 31 1 -0.3634 0.5126 -0.8907 32 1 3.1305 -0.7444 1.2353 33 1 1.6987 -0.1959 2.1390 34 1 1.8479 -2.6629 2.1670 35 1 0.4132 -2.1355 1.2541 36 1 3.0979 -3.0043 0.0867 37 1 1.5573 -3.8928 -0.0124 38 1 1.3296 -4.8045 -1.8657 39 1 -0.2026 -4.1990 -1.1918 40 1 -2.3642 -7.1252 -5.8265 41 1 0.3390 -0.2022 -2.4625 42 1 1.8102 -0.5884 -3.3871 43 1 2.2489 1.7394 -1.8089 44 1 1.7513 4.0592 -2.7028 45 1 1.0396 5.3682 -4.7559 46 1 0.7988 3.7897 -5.6786 47 1 3.2436 3.2118 -5.3284 48 1 3.4847 4.7906 -4.4063 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500652214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:13 Heat of formation + Delta-G solvation = -36.966232 kcal Electronic energy + Delta-G solvation = -28195.187531 eV Core-core repulsion = 24377.542072 eV Total energy + Delta-G solvation = -3817.645458 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.87589 -39.64808 -37.65568 -36.36934 -34.99283 -33.47653 -32.41568 -31.89446 -29.64776 -27.52078 -26.66515 -25.48675 -24.66952 -23.83162 -22.63284 -21.77592 -20.69054 -19.82549 -18.50726 -17.79653 -17.41507 -16.81025 -16.32882 -15.61671 -15.45223 -15.21530 -14.94044 -14.79234 -14.50945 -14.41959 -14.16766 -13.87904 -13.80734 -13.47707 -13.09846 -12.77000 -12.64500 -12.55343 -12.26969 -12.02311 -11.81842 -11.73280 -11.65935 -11.20513 -11.13368 -11.05366 -11.00711 -10.83773 -10.75876 -10.71931 -10.65017 -10.59688 -9.82255 -9.79196 -9.08660 -9.04986 -8.78889 -8.45971 -8.19991 -6.48192 -6.19913 -3.90629 2.54232 2.72813 3.00002 3.17338 3.22959 3.29339 3.33263 3.61911 3.71415 4.21015 4.36481 4.48215 4.52905 4.56728 4.64628 4.68563 4.78518 4.91270 4.96565 4.97617 5.08310 5.14956 5.24226 5.30743 5.35890 5.38392 5.50562 5.53239 5.54358 5.62333 5.69723 5.72113 5.73750 5.82971 5.85216 5.92297 5.94758 5.97692 6.10533 6.12147 6.27517 6.31751 6.46803 6.71988 7.49069 7.54840 7.60559 8.32148 8.36242 8.54146 9.25057 10.87365 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012036 B = 0.003046 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.765619 B = 9190.781582 C =11111.386023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 H 0.076 0.924 4 C -0.112 4.112 5 C -0.140 4.140 6 C 0.110 3.890 7 N -0.612 5.612 8 C 0.532 3.468 9 O -0.501 6.501 10 C -0.151 4.151 11 S -0.057 6.057 12 C -0.536 4.536 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.866 5.866 16 Si 0.918 3.082 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.144 3.856 21 H 0.073 0.927 22 C 0.120 3.880 23 N -0.731 5.731 24 C 0.537 3.463 25 O -0.527 6.527 26 C -0.194 4.194 27 C -0.149 4.149 28 C -0.155 4.155 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.268 0.732 41 H 0.083 0.917 42 H 0.105 0.895 43 H 0.391 0.609 44 H 0.120 0.880 45 H 0.101 0.899 46 H 0.109 0.891 47 H 0.100 0.900 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.742 18.951 14.526 26.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.123 4.123 3 H 0.094 0.906 4 C -0.150 4.150 5 C -0.178 4.178 6 C -0.014 4.014 7 N -0.349 5.349 8 C 0.320 3.680 9 O -0.375 6.375 10 C -0.301 4.301 11 S 0.169 5.831 12 C -0.684 4.684 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.502 5.502 16 Si 0.744 3.256 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.197 1.197 20 C 0.040 3.960 21 H 0.090 0.910 22 C -0.002 4.002 23 N -0.385 5.385 24 C 0.322 3.678 25 O -0.403 6.403 26 C -0.215 4.215 27 C -0.186 4.186 28 C -0.192 4.192 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.123 0.877 43 H 0.224 0.776 44 H 0.138 0.862 45 H 0.119 0.881 46 H 0.127 0.873 47 H 0.118 0.882 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.884 19.386 12.136 25.329 hybrid contribution 0.208 -1.691 2.188 2.773 sum 11.092 17.695 14.324 25.325 Atomic orbital electron populations 1.21908 0.94337 1.02756 1.01718 1.21541 0.97213 0.98868 0.94674 0.90569 1.21532 1.00365 0.95749 0.97360 1.21987 1.02111 0.95922 0.97757 1.21731 1.00180 0.95704 0.83749 1.48073 1.58246 1.09761 1.18860 1.20434 0.76651 0.88429 0.82483 1.90756 1.55343 1.63379 1.27992 1.23576 1.03997 0.94783 1.07786 1.85493 1.68910 1.15445 1.13223 1.22851 1.42120 0.98939 1.04484 0.91006 1.24990 0.95128 0.98981 0.94481 1.70021 1.36828 1.37021 1.06281 0.86181 0.78905 0.82416 0.78069 1.20290 1.20755 1.19725 1.21350 0.98554 0.81315 0.94823 0.90958 1.22325 1.01671 0.78074 0.98109 1.46249 1.59518 1.11381 1.21367 1.19567 0.79070 0.87023 0.82143 1.90781 1.39809 1.73130 1.36572 1.22230 1.08456 0.93908 0.96937 1.22952 0.97334 1.00112 0.98249 1.22943 0.92437 1.03256 1.00594 0.91865 0.92815 0.92146 0.91817 0.91623 0.90748 0.90786 0.91476 0.88988 0.89353 0.89325 0.92173 0.89921 0.87724 0.77569 0.86161 0.88064 0.87270 0.88192 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.20 37.15 0.30 -1.27 16 2 C -0.10 -0.90 2.53 -90.50 -0.23 -1.12 16 3 H 0.08 0.52 6.86 -51.93 -0.36 0.16 16 4 C -0.11 -0.81 5.43 -26.68 -0.14 -0.95 16 5 C -0.14 -1.13 5.74 -26.61 -0.15 -1.29 16 6 C 0.11 1.10 6.34 -3.70 -0.02 1.08 16 7 N -0.61 -8.14 2.43 -165.20 -0.40 -8.55 16 8 C 0.53 9.76 7.55 -10.98 -0.08 9.68 16 9 O -0.50 -11.07 11.41 5.56 0.06 -11.00 16 10 C -0.15 -3.01 4.51 36.00 0.16 -2.85 16 11 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 12 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16 13 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 14 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 15 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 16 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C 0.14 1.64 2.81 -67.60 -0.19 1.45 16 21 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 22 C 0.12 1.76 3.00 -4.04 -0.01 1.75 16 23 N -0.73 -8.44 5.33 -60.30 -0.32 -8.76 16 24 C 0.54 7.38 7.61 -10.99 -0.08 7.30 16 25 O -0.53 -10.16 16.25 5.55 0.09 -10.07 16 26 C -0.19 -1.83 6.19 -91.73 -0.57 -2.40 16 27 C -0.15 -1.37 10.04 -26.73 -0.27 -1.64 16 28 C -0.15 -1.27 10.24 -26.69 -0.27 -1.54 16 29 H 0.06 0.77 5.98 -51.93 -0.31 0.46 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.74 6.39 -51.93 -0.33 0.41 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.69 6.33 -51.93 -0.33 0.36 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.97 5.94 -51.93 -0.31 0.66 16 38 H 0.09 1.63 7.73 -51.92 -0.40 1.23 16 39 H 0.09 1.65 7.91 -51.91 -0.41 1.23 16 40 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.08 1.48 5.52 -51.93 -0.29 1.19 16 42 H 0.10 1.97 6.27 -51.93 -0.33 1.65 16 43 H 0.39 3.05 7.13 -40.82 -0.29 2.76 16 44 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.11 1.25 7.67 -51.93 -0.40 0.85 16 47 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 386.55 15.07 5.83 5.83 Total: -1.00 -36.33 386.55 -10.13 -46.46 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.52 Total: 3.80 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -1.36 Total: -4.76 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.01 Total: -42.96 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: 0.15 Total: -21.07 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.33 -10.13 -46.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500652214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.494 kcal (2) G-P(sol) polarization free energy of solvation -36.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds