Wall clock time and date at job start Sat Apr 11 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.52485 * 2 1 4 4 C 1.53047 * 109.49660 * 120.08251 * 2 1 3 5 5 C 1.53043 * 109.53725 * 58.58862 * 4 2 1 6 6 C 1.53186 * 109.31321 * 61.36239 * 5 4 2 7 7 N 1.46959 * 108.89244 * 305.44406 * 6 5 4 8 8 C 1.34780 * 120.65157 * 233.53960 * 7 6 5 9 9 O 1.21283 * 119.99725 * 185.19942 * 8 7 6 10 10 C 1.50698 * 120.00350 * 5.20023 * 8 7 6 11 11 S 1.80994 * 109.46989 * 179.97438 * 10 8 7 12 12 C 1.76211 * 99.99884 * 179.97438 * 11 10 8 13 13 H 1.08004 * 119.99468 * 0.02562 * 12 11 10 14 14 C 1.38793 * 120.00004 * 180.02562 * 12 11 10 15 15 N 1.31636 * 120.00221 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99928 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47131 * 89.99708 * 16 14 12 18 18 H 1.48501 * 109.46858 * 209.99451 * 16 14 12 19 19 H 1.48496 * 109.47251 * 329.99620 * 16 14 12 20 20 C 1.46921 * 118.71475 * 53.35351 * 7 6 5 21 21 H 1.08999 * 109.58728 * 66.50555 * 20 7 6 22 22 C 1.52998 * 109.58828 * 186.78634 * 20 7 6 23 23 N 1.46497 * 109.47509 * 177.79440 * 22 20 7 24 24 C 1.34778 * 120.00619 * 175.06408 * 23 22 20 25 25 O 1.21286 * 119.99363 * 359.97438 * 24 23 22 26 26 C 1.50690 * 120.00311 * 179.97438 * 24 23 22 27 27 C 1.53008 * 117.50062 * 179.97438 * 26 24 23 28 28 C 1.52999 * 60.03360 * 252.52336 * 27 26 24 29 29 H 1.08999 * 109.47279 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47230 * 300.08012 * 1 2 3 31 31 H 1.09001 * 109.47455 * 60.07746 * 1 2 3 32 32 H 1.09004 * 109.45528 * 178.60650 * 4 2 1 33 33 H 1.09001 * 109.46056 * 298.56505 * 4 2 1 34 34 H 1.08994 * 109.49485 * 181.31930 * 5 4 2 35 35 H 1.09003 * 109.49289 * 301.40737 * 5 4 2 36 36 H 1.09001 * 109.58665 * 65.15368 * 6 5 4 37 37 H 1.09004 * 109.58495 * 185.43291 * 6 5 4 38 38 H 1.09001 * 109.47178 * 300.00291 * 10 8 7 39 39 H 1.09006 * 109.46793 * 60.00142 * 10 8 7 40 40 H 0.96993 * 119.99777 * 180.02562 * 15 14 12 41 41 H 1.09003 * 109.47257 * 57.78965 * 22 20 7 42 42 H 1.09002 * 109.47066 * 297.79232 * 22 20 7 43 43 H 0.97003 * 119.99619 * 355.05915 * 23 22 20 44 44 H 1.08999 * 115.56280 * 325.68518 * 26 24 23 45 45 H 1.08999 * 117.49711 * 145.01729 * 27 26 24 46 46 H 1.09000 * 117.49071 * 0.02932 * 27 26 24 47 47 H 1.08999 * 117.49878 * 107.47807 * 28 27 26 48 48 H 1.09002 * 117.49720 * 252.47274 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0407 -0.7232 1.2484 5 6 1.5029 -2.1559 1.2659 6 6 2.0139 -2.9040 0.0307 7 7 1.6543 -2.1390 -1.1715 8 6 0.9793 -2.7232 -2.1813 9 8 0.7710 -2.1095 -3.2064 10 6 0.4835 -4.1389 -2.0366 11 16 -0.3783 -4.6338 -3.5494 12 6 -0.8367 -6.2791 -3.1160 13 1 -0.5682 -6.6774 -2.1486 14 6 -1.5428 -7.0631 -4.0177 15 7 -1.8705 -6.5774 -5.1965 16 14 -2.0295 -8.8070 -3.5580 17 1 -3.3637 -8.7931 -2.9062 18 1 -2.0858 -9.6444 -4.7831 19 1 -1.0259 -9.3699 -2.6194 20 6 2.0412 -0.7238 -1.2496 21 1 3.1272 -0.6441 -1.2994 22 6 1.4228 -0.0912 -2.4978 23 7 1.7666 1.3321 -2.5454 24 6 1.4127 2.0757 -3.6123 25 8 0.8100 1.5663 -4.5334 26 6 1.7659 3.5398 -3.6609 27 6 1.3369 4.3294 -4.8994 28 6 2.8116 3.9809 -4.6882 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5151 0.8893 31 1 -0.3634 0.5126 -0.8907 32 1 3.1305 -0.7444 1.2353 33 1 1.6987 -0.1959 2.1390 34 1 1.8479 -2.6629 2.1670 35 1 0.4132 -2.1355 1.2541 36 1 3.0979 -3.0043 0.0867 37 1 1.5573 -3.8928 -0.0124 38 1 1.3296 -4.8045 -1.8657 39 1 -0.2026 -4.1990 -1.1918 40 1 -2.3642 -7.1252 -5.8265 41 1 0.3390 -0.2022 -2.4625 42 1 1.8102 -0.5884 -3.3871 43 1 2.2489 1.7394 -1.8089 44 1 1.7513 4.0592 -2.7028 45 1 1.0396 5.3682 -4.7559 46 1 0.7988 3.7897 -5.6786 47 1 3.2436 3.2118 -5.3284 48 1 3.4847 4.7906 -4.4063 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500652214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:13 Heat of formation + Delta-G solvation = -62.373950 kcal Electronic energy + Delta-G solvation = -28196.289292 eV Core-core repulsion = 24377.542072 eV Total energy + Delta-G solvation = -3818.747220 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.00618 -40.75693 -38.85425 -37.20565 -36.14556 -34.61875 -34.53316 -32.83376 -31.04728 -28.69845 -27.66378 -27.49974 -25.66860 -24.73380 -23.31808 -22.68711 -21.85506 -20.88931 -19.88574 -19.24192 -18.56129 -18.06278 -17.45046 -16.90906 -16.82508 -16.53138 -16.26492 -15.89843 -15.82189 -15.50518 -15.34400 -15.07426 -14.80197 -14.57048 -14.47484 -14.24603 -13.72920 -13.57288 -13.55583 -13.18434 -13.17649 -12.91132 -12.80468 -12.64803 -12.47420 -12.44958 -12.03899 -11.95030 -11.73419 -11.54327 -11.49769 -11.41177 -11.34516 -11.16202 -10.97448 -10.37353 -10.26350 -10.07531 -9.57939 -8.69531 -8.36029 -6.15032 1.22716 1.40766 1.42704 1.48683 1.53430 1.56363 1.86817 2.25315 2.35825 2.92537 2.97867 3.22916 3.46936 3.65763 3.74297 3.81662 3.87506 3.88985 3.98213 4.07181 4.08382 4.22014 4.23209 4.24112 4.38583 4.43994 4.54396 4.59512 4.73739 4.75262 4.81728 4.87047 4.93178 4.97080 5.00758 5.04215 5.16217 5.20439 5.22902 5.23287 5.29655 5.39144 5.41766 5.51873 5.64723 6.17629 6.26502 6.56741 7.04593 7.14213 7.31831 8.73260 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012036 B = 0.003046 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.765619 B = 9190.781582 C =11111.386023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 H 0.108 0.892 4 C -0.106 4.106 5 C -0.136 4.136 6 C 0.099 3.901 7 N -0.599 5.599 8 C 0.527 3.473 9 O -0.551 6.551 10 C -0.121 4.121 11 S -0.157 6.157 12 C -0.543 4.543 13 H 0.083 0.917 14 C 0.011 3.989 15 N -0.913 5.913 16 Si 1.001 2.999 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.255 1.255 20 C 0.145 3.855 21 H 0.100 0.900 22 C 0.135 3.865 23 N -0.710 5.710 24 C 0.525 3.475 25 O -0.597 6.597 26 C -0.192 4.192 27 C -0.160 4.160 28 C -0.139 4.139 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.032 0.968 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.057 0.943 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.271 0.729 41 H 0.042 0.958 42 H 0.055 0.945 43 H 0.415 0.585 44 H 0.163 0.837 45 H 0.133 0.867 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.217 20.114 19.101 31.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 H 0.126 0.874 4 C -0.144 4.144 5 C -0.174 4.174 6 C -0.022 4.022 7 N -0.334 5.334 8 C 0.315 3.685 9 O -0.428 6.428 10 C -0.272 4.272 11 S 0.070 5.930 12 C -0.691 4.691 13 H 0.102 0.898 14 C -0.194 4.194 15 N -0.550 5.550 16 Si 0.822 3.178 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.179 1.179 20 C 0.042 3.958 21 H 0.118 0.882 22 C 0.012 3.988 23 N -0.364 5.364 24 C 0.313 3.687 25 O -0.477 6.477 26 C -0.213 4.213 27 C -0.198 4.198 28 C -0.176 4.176 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.253 0.747 44 H 0.180 0.820 45 H 0.151 0.849 46 H 0.092 0.908 47 H 0.097 0.903 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 13.421 20.584 16.818 29.777 hybrid contribution -0.512 -1.960 0.812 2.183 sum 12.909 18.624 17.630 28.710 Atomic orbital electron populations 1.21877 0.96084 1.01157 1.01388 1.21578 0.95566 1.00425 0.93870 0.87414 1.21544 1.01584 0.94566 0.96679 1.21989 1.01194 0.96872 0.97382 1.22102 1.01878 0.95300 0.82966 1.48042 1.56090 1.10807 1.18416 1.20212 0.77407 0.87746 0.83147 1.90790 1.57571 1.64162 1.30294 1.23370 1.03875 0.96469 1.03522 1.85731 1.70891 1.16799 1.19541 1.23180 1.42147 0.98781 1.05003 0.89841 1.26179 0.94812 1.04192 0.94170 1.70206 1.37892 1.39089 1.07769 0.84928 0.78998 0.75819 0.78070 1.19291 1.20344 1.17922 1.21550 0.99692 0.79997 0.94563 0.88241 1.21730 0.99262 0.79719 0.98132 1.45976 1.58741 1.10024 1.21698 1.20538 0.77744 0.89063 0.81306 1.90758 1.42970 1.74875 1.39139 1.22300 1.09334 0.90576 0.99080 1.23017 0.98197 1.01222 0.97339 1.23054 0.92200 1.03350 0.98989 0.94218 0.90603 0.94910 0.89630 0.89597 0.88098 0.92416 0.88750 0.89731 0.87496 0.87851 0.92044 0.93941 0.92640 0.74730 0.81959 0.84920 0.90831 0.90275 0.84053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.20 71.98 0.59 -2.36 16 2 C -0.10 -1.34 2.53 -10.72 -0.03 -1.36 16 3 H 0.11 0.91 6.86 -2.39 -0.02 0.89 16 4 C -0.11 -0.98 5.43 30.62 0.17 -0.81 16 5 C -0.14 -1.69 5.74 30.67 0.18 -1.52 16 6 C 0.10 1.72 6.34 86.35 0.55 2.27 16 7 N -0.60 -15.58 2.43 -794.96 -1.93 -17.51 16 8 C 0.53 20.34 7.55 87.66 0.66 21.00 16 9 O -0.55 -26.66 11.41 -3.04 -0.03 -26.70 16 10 C -0.12 -5.00 4.51 71.24 0.32 -4.68 16 11 S -0.16 -9.07 20.57 -56.49 -1.16 -10.23 16 12 C -0.54 -31.74 9.50 67.95 0.65 -31.10 16 13 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 14 C 0.01 0.64 5.49 84.85 0.47 1.10 16 15 N -0.91 -57.87 13.22 21.65 0.29 -57.59 16 16 Si 1.00 44.48 29.55 68.60 2.03 46.51 16 17 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 20 C 0.15 3.11 2.81 44.98 0.13 3.24 16 21 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 22 C 0.13 4.22 3.00 86.38 0.26 4.48 16 23 N -0.71 -16.38 5.33 -463.07 -2.47 -18.85 16 24 C 0.53 15.08 7.61 87.65 0.67 15.74 16 25 O -0.60 -25.40 16.25 -3.05 -0.05 -25.45 16 26 C -0.19 -3.32 6.19 -11.51 -0.07 -3.39 16 27 C -0.16 -2.86 10.04 30.60 0.31 -2.56 16 28 C -0.14 -2.03 10.24 30.62 0.31 -1.71 16 29 H 0.04 0.97 5.98 -2.39 -0.01 0.96 16 30 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.03 0.82 6.39 -2.39 -0.02 0.81 16 32 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 0.94 6.33 -2.39 -0.02 0.92 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.61 5.94 -2.38 -0.01 1.60 16 38 H 0.11 3.97 7.73 -2.39 -0.02 3.95 16 39 H 0.10 3.91 7.91 -2.39 -0.02 3.89 16 40 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 41 H 0.04 1.68 5.52 -2.39 -0.01 1.67 16 42 H 0.06 2.32 6.27 -2.39 -0.01 2.30 16 43 H 0.41 5.36 7.13 -92.71 -0.66 4.70 16 44 H 0.16 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.07 1.86 7.67 -2.39 -0.02 1.84 16 47 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -91.13 386.55 2.13 -88.99 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.31 Total: 22.46 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 5.15 Total: -1.64 kcal Atomic # 7 Polarization: -89.83 SS G_CDS: -4.11 Total: -93.94 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -0.08 Total: -52.14 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: -9.07 SS G_CDS: -1.16 Total: -10.23 kcal Total: -91.13 2.13 -88.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500652214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.619 kcal (2) G-P(sol) polarization free energy of solvation -91.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds