Wall clock time and date at job start Sat Apr 11 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.49851 * 2 1 4 4 C 1.53041 * 109.49338 * 239.93293 * 2 1 3 5 5 C 1.53038 * 109.53917 * 301.41298 * 4 2 1 6 6 C 1.53191 * 109.31540 * 298.63665 * 5 4 2 7 7 N 1.46930 * 108.77105 * 54.63682 * 6 5 4 8 8 C 1.34775 * 120.63049 * 126.41604 * 7 6 5 9 9 O 1.21276 * 120.00318 * 174.86955 * 8 7 6 10 10 C 1.50707 * 119.99720 * 354.87058 * 8 7 6 11 11 S 1.81001 * 109.46878 * 180.02562 * 10 8 7 12 12 C 1.76199 * 99.99902 * 179.97438 * 11 10 8 13 13 H 1.08002 * 119.99881 * 0.02562 * 12 11 10 14 14 C 1.38794 * 120.00189 * 179.97438 * 12 11 10 15 15 N 1.31638 * 119.99792 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00314 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47337 * 90.00157 * 16 14 12 18 18 H 1.48504 * 109.46997 * 210.00320 * 16 14 12 19 19 H 1.48499 * 109.47014 * 329.99649 * 16 14 12 20 20 C 1.46925 * 118.73850 * 306.38502 * 7 6 5 21 21 H 1.08994 * 109.58921 * 293.82974 * 20 7 6 22 22 C 1.52999 * 109.58311 * 173.39902 * 20 7 6 23 23 N 1.46497 * 109.47319 * 73.32532 * 22 20 7 24 24 C 1.34771 * 120.00311 * 174.72670 * 23 22 20 25 25 O 1.21281 * 120.00407 * 0.02562 * 24 23 22 26 26 C 1.50701 * 120.00052 * 179.97438 * 24 23 22 27 27 C 1.53004 * 117.50113 * 248.74943 * 26 24 23 28 28 C 1.53001 * 117.49824 * 180.09120 * 26 24 23 29 29 H 1.08999 * 109.47520 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47024 * 60.06381 * 1 2 3 31 31 H 1.09003 * 109.47263 * 300.07066 * 1 2 3 32 32 H 1.08999 * 109.46093 * 61.44359 * 4 2 1 33 33 H 1.09001 * 109.45278 * 181.39569 * 4 2 1 34 34 H 1.09001 * 109.49787 * 58.59316 * 5 4 2 35 35 H 1.09007 * 109.49133 * 178.65077 * 5 4 2 36 36 H 1.08996 * 109.58760 * 174.42287 * 6 5 4 37 37 H 1.08997 * 109.58631 * 294.84773 * 6 5 4 38 38 H 1.09000 * 109.46954 * 299.99476 * 10 8 7 39 39 H 1.08993 * 109.47237 * 59.99530 * 10 8 7 40 40 H 0.97000 * 119.99936 * 180.02562 * 15 14 12 41 41 H 1.09006 * 109.46956 * 193.32571 * 22 20 7 42 42 H 1.08997 * 109.47325 * 313.32256 * 22 20 7 43 43 H 0.97006 * 119.99395 * 354.73032 * 23 22 20 44 44 H 1.08996 * 115.54904 * 34.42212 * 26 24 23 45 45 H 1.09003 * 117.49576 * 0.02562 * 27 26 24 46 46 H 1.08997 * 117.49749 * 145.02254 * 27 26 24 47 47 H 1.09003 * 117.49520 * 214.98086 * 28 26 24 48 48 H 1.09000 * 117.49989 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0407 -0.7228 -1.2486 5 6 1.5029 -2.1555 -1.2665 6 6 2.0139 -2.9041 -0.0315 7 7 1.6514 -2.1384 1.1690 8 6 0.9746 -2.7226 2.1776 9 8 0.7624 -2.1082 3.2014 10 6 0.4816 -4.1394 2.0330 11 16 -0.3836 -4.6341 3.5439 12 6 -0.8394 -6.2800 3.1105 13 1 -0.5674 -6.6790 2.1444 14 6 -1.5470 -7.0641 4.0109 15 7 -1.8781 -6.5780 5.1886 16 14 -2.0297 -8.8093 3.5517 17 1 -0.9532 -9.7454 3.9641 18 1 -3.2928 -9.1718 4.2433 19 1 -2.2269 -8.8980 2.0825 20 6 2.0413 -0.7242 1.2494 21 1 3.1274 -0.6467 1.2978 22 6 1.4229 -0.0919 2.4978 23 7 2.1281 -0.5719 3.6888 24 6 1.8251 -0.0665 4.9009 25 8 0.9682 0.7853 5.0058 26 6 2.5502 -0.5607 6.1260 27 6 1.7498 -1.3854 7.1362 28 6 2.1592 0.0506 7.4730 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5129 -0.8906 31 1 -0.3634 0.5149 0.8894 32 1 1.6988 -0.1952 -2.1390 33 1 3.1305 -0.7441 -1.2354 34 1 0.4132 -2.1351 -1.2547 35 1 1.8475 -2.6620 -2.1682 36 1 1.5553 -3.8918 0.0127 37 1 3.0978 -3.0044 -0.0876 38 1 -0.2021 -4.2015 1.1864 39 1 1.3292 -4.8037 1.8651 40 1 -2.3723 -7.1261 5.8180 41 1 1.5097 0.9930 2.4367 42 1 0.3707 -0.3690 2.5623 43 1 2.8133 -1.2534 3.6049 44 1 3.5973 -0.8246 5.9781 45 1 0.6988 -1.5708 6.9143 46 1 2.2705 -2.1914 7.6530 47 1 2.9492 0.1886 8.2113 48 1 1.3778 0.8106 7.4730 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500652215.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:15 Heat of formation + Delta-G solvation = -43.474208 kcal Electronic energy + Delta-G solvation = -28921.020494 eV Core-core repulsion = 25103.092829 eV Total energy + Delta-G solvation = -3817.927665 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.00631 -40.50294 -38.69310 -37.12728 -35.84552 -34.62056 -34.54639 -32.82238 -30.85927 -28.62482 -27.63571 -27.44091 -25.74722 -24.38671 -23.29403 -22.84395 -21.37096 -21.12250 -19.84547 -19.20838 -18.51560 -17.62218 -17.24365 -17.15292 -16.88242 -16.52048 -16.14354 -15.80820 -15.64441 -15.54110 -15.24127 -15.07028 -14.58992 -14.46083 -14.28348 -13.99361 -13.80129 -13.56688 -13.49779 -13.29899 -13.14240 -12.90598 -12.74321 -12.64395 -12.49339 -12.45278 -12.09367 -11.89499 -11.71164 -11.49269 -11.44628 -11.36759 -11.29330 -11.14667 -10.83351 -10.22366 -10.19893 -9.82182 -9.37302 -8.63579 -8.34860 -6.11282 1.26717 1.40307 1.45801 1.55290 1.58242 1.75046 2.11107 2.27880 2.34543 2.99287 3.02687 3.26509 3.49520 3.76420 3.81546 3.88940 3.92797 3.97203 4.01253 4.11318 4.14584 4.22008 4.24113 4.28674 4.42287 4.49230 4.59110 4.61155 4.68702 4.74313 4.78217 4.86071 4.90776 4.99206 5.03446 5.05626 5.16309 5.19258 5.22450 5.25842 5.31131 5.40676 5.52933 5.63046 5.71330 6.18732 6.36265 6.67980 7.06797 7.27324 7.41528 8.73829 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008326 B = 0.004544 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3362.072139 B = 6159.899178 C = 8980.604243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 H 0.101 0.899 4 C -0.105 4.105 5 C -0.136 4.136 6 C 0.102 3.898 7 N -0.602 5.602 8 C 0.522 3.478 9 O -0.526 6.526 10 C -0.124 4.124 11 S -0.142 6.142 12 C -0.546 4.546 13 H 0.079 0.921 14 C 0.016 3.984 15 N -0.911 5.911 16 Si 0.994 3.006 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.259 1.259 20 C 0.148 3.852 21 H 0.103 0.897 22 C 0.137 3.863 23 N -0.675 5.675 24 C 0.536 3.464 25 O -0.605 6.605 26 C -0.192 4.192 27 C -0.157 4.157 28 C -0.138 4.138 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.270 0.730 41 H 0.063 0.937 42 H 0.048 0.952 43 H 0.402 0.598 44 H 0.151 0.849 45 H 0.062 0.938 46 H 0.123 0.877 47 H 0.136 0.864 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.413 11.098 -13.213 23.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 H 0.119 0.881 4 C -0.142 4.142 5 C -0.174 4.174 6 C -0.020 4.020 7 N -0.338 5.338 8 C 0.309 3.691 9 O -0.402 6.402 10 C -0.275 4.275 11 S 0.086 5.914 12 C -0.694 4.694 13 H 0.097 0.903 14 C -0.189 4.189 15 N -0.547 5.547 16 Si 0.816 3.184 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.183 1.183 20 C 0.045 3.955 21 H 0.121 0.879 22 C 0.013 3.987 23 N -0.322 5.322 24 C 0.323 3.677 25 O -0.488 6.488 26 C -0.213 4.213 27 C -0.195 4.195 28 C -0.175 4.175 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.237 0.763 44 H 0.168 0.832 45 H 0.080 0.920 46 H 0.141 0.859 47 H 0.154 0.846 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.419 12.571 -11.526 22.334 hybrid contribution -0.562 -2.206 -1.041 2.503 sum 13.857 10.365 -12.567 21.387 Atomic orbital electron populations 1.21884 0.96018 1.01245 1.01493 1.21494 0.95583 1.00362 0.93855 0.88072 1.21516 1.01481 0.94668 0.96580 1.21977 1.01067 0.96702 0.97692 1.22011 1.01701 0.95089 0.83199 1.48048 1.56454 1.10823 1.18463 1.20009 0.78172 0.87468 0.83438 1.90900 1.56238 1.63403 1.29614 1.23392 1.03537 0.97254 1.03339 1.85544 1.70750 1.15957 1.19182 1.23189 1.42013 0.99264 1.04952 0.90328 1.26062 0.94812 1.03800 0.94229 1.70186 1.37950 1.38829 1.07758 0.85020 0.77848 0.76666 0.78878 1.19136 1.20483 1.18329 1.21583 0.99813 0.79873 0.94263 0.87920 1.21364 0.97192 0.96719 0.83423 1.45570 1.39755 1.40859 1.06048 1.19988 0.82021 0.80631 0.85018 1.90596 1.35503 1.35744 1.86959 1.22262 1.01447 1.08166 0.89384 1.22845 0.99524 0.96023 1.01095 1.22985 1.03752 0.95309 0.95441 0.93930 0.91019 0.94553 0.90112 0.89776 0.92600 0.88493 0.90112 0.88743 0.88969 0.87996 0.92111 0.91925 0.93400 0.76259 0.83172 0.91958 0.85927 0.84622 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.23 71.98 0.59 -2.44 16 2 C -0.09 -1.40 2.77 -10.71 -0.03 -1.43 16 3 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.11 -1.07 5.43 30.62 0.17 -0.90 16 5 C -0.14 -1.71 5.74 30.67 0.18 -1.54 16 6 C 0.10 1.63 6.35 86.36 0.55 2.18 16 7 N -0.60 -13.77 2.41 -795.04 -1.92 -15.69 16 8 C 0.52 17.78 7.33 87.66 0.64 18.42 16 9 O -0.53 -21.69 9.58 -3.02 -0.03 -21.72 16 10 C -0.12 -4.78 4.51 71.24 0.32 -4.46 16 11 S -0.14 -7.72 20.57 -56.49 -1.16 -8.88 16 12 C -0.55 -30.99 9.50 67.95 0.65 -30.35 16 13 H 0.08 4.16 7.80 -2.91 -0.02 4.14 16 14 C 0.02 0.90 5.49 84.85 0.47 1.36 16 15 N -0.91 -55.98 13.22 21.65 0.29 -55.69 16 16 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 18 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 20 C 0.15 2.88 2.61 44.97 0.12 3.00 16 21 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 22 C 0.14 3.92 3.36 86.38 0.29 4.21 16 23 N -0.67 -20.48 3.17 -463.07 -1.47 -21.95 16 24 C 0.54 19.11 7.33 87.66 0.64 19.75 16 25 O -0.60 -26.70 16.25 -3.03 -0.05 -26.74 16 26 C -0.19 -5.44 6.19 -11.54 -0.07 -5.51 16 27 C -0.16 -4.84 10.24 30.62 0.31 -4.53 16 28 C -0.14 -3.60 10.05 30.62 0.31 -3.29 16 29 H 0.04 1.03 5.97 -2.39 -0.01 1.01 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.04 0.90 6.66 -2.39 -0.02 0.88 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.93 6.33 -2.39 -0.02 0.91 16 35 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.08 1.47 5.93 -2.39 -0.01 1.45 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 3.40 7.90 -2.40 -0.02 3.38 16 39 H 0.10 3.55 7.73 -2.40 -0.02 3.54 16 40 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 41 H 0.06 1.74 8.08 -2.38 -0.02 1.72 16 42 H 0.05 1.82 5.36 -2.39 -0.01 1.81 16 43 H 0.40 10.65 8.04 -92.70 -0.75 9.90 16 44 H 0.15 3.12 8.14 -2.39 -0.02 3.10 16 45 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 47 H 0.14 2.48 8.14 -2.39 -0.02 2.46 16 48 H 0.08 2.55 7.67 -2.39 -0.02 2.53 16 Total: -1.00 -81.29 386.56 3.04 -78.25 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: 0.22 Total: 32.39 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 5.13 Total: -5.53 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -3.10 Total: -93.33 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: -0.08 Total: -48.46 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -7.72 SS G_CDS: -1.16 Total: -8.88 kcal Total: -81.29 3.04 -78.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500652215.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.774 kcal (2) G-P(sol) polarization free energy of solvation -81.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds