Wall clock time and date at job start Sat Apr 11 2020 06:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 110.43783 * 2 1 4 4 C 1.54273 * 110.59482 * 237.38323 * 2 1 3 5 5 C 1.53869 * 106.59424 * 217.66075 * 4 2 1 6 6 C 1.54259 * 106.60271 * 359.97438 * 5 4 2 7 7 H 1.08998 * 110.60277 * 264.87924 * 6 5 4 8 8 C 1.50706 * 110.48573 * 142.28839 * 6 5 4 9 9 O 1.21281 * 120.00181 * 270.07316 * 8 6 5 10 10 N 1.34777 * 119.99743 * 90.34982 * 8 6 5 11 11 C 1.46504 * 119.99930 * 4.34574 * 10 8 6 12 12 C 1.46499 * 119.99835 * 184.34825 * 10 8 6 13 13 C 1.53953 * 113.73874 * 218.73772 * 12 10 8 14 14 N 1.47819 * 86.03414 * 222.08479 * 13 12 10 15 15 C 1.34772 * 134.45340 * 204.64600 * 14 13 12 16 16 O 1.21287 * 120.00156 * 179.86917 * 15 14 13 17 17 C 1.50702 * 120.00112 * 359.86578 * 15 14 13 18 18 S 1.81003 * 109.47171 * 179.97438 * 17 15 14 19 19 C 1.76202 * 100.00136 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99910 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99809 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00312 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99794 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46702 * 60.00350 * 23 21 19 25 25 H 1.48499 * 109.47046 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47225 * 300.00324 * 23 21 19 27 27 C 1.47580 * 91.05155 * 24.55107 * 14 13 12 28 28 C 1.54888 * 110.48091 * 122.54456 * 2 1 3 29 29 H 1.08998 * 109.47026 * 297.46314 * 1 2 3 30 30 H 1.08997 * 109.47045 * 57.45271 * 1 2 3 31 31 H 1.08995 * 109.47773 * 177.45752 * 1 2 3 32 32 H 1.08997 * 110.02925 * 336.94190 * 4 2 1 33 33 H 1.08994 * 110.03054 * 98.37306 * 4 2 1 34 34 H 1.09011 * 110.02997 * 240.71415 * 5 4 2 35 35 H 1.09001 * 110.03598 * 119.28631 * 5 4 2 36 36 H 1.09004 * 109.46841 * 94.32896 * 11 10 8 37 37 H 1.09003 * 109.46761 * 214.32392 * 11 10 8 38 38 H 1.08993 * 109.47552 * 334.32749 * 11 10 8 39 39 H 1.08997 * 112.94928 * 350.33057 * 12 10 8 40 40 H 1.09001 * 113.77028 * 336.35063 * 13 12 10 41 41 H 1.08999 * 113.76501 * 107.74670 * 13 12 10 42 42 H 1.08991 * 109.47471 * 299.99970 * 17 15 14 43 43 H 1.08996 * 109.46842 * 60.00383 * 17 15 14 44 44 H 0.97001 * 119.99709 * 180.02562 * 22 21 19 45 45 H 1.08996 * 113.77028 * 221.14891 * 27 14 13 46 46 H 1.09002 * 113.87047 * 89.76329 * 27 14 13 47 47 H 1.08995 * 110.75857 * 38.43826 * 28 2 1 48 48 H 1.08992 * 110.91740 * 275.13206 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0727 -0.7784 -1.2164 5 6 3.3200 -1.5377 -0.7314 6 6 3.4922 -1.1937 0.7625 7 1 4.1903 -0.3660 0.8875 8 6 3.9647 -2.4012 1.5307 9 8 3.1575 -3.1644 2.0173 10 7 5.2844 -2.6298 1.6816 11 6 6.2583 -1.6560 1.1820 12 6 5.7448 -3.8520 2.3452 13 6 6.9661 -3.6392 3.2581 14 7 7.4807 -4.9040 2.6921 15 6 8.3429 -5.8475 3.1196 16 8 8.5822 -6.8109 2.4228 17 6 9.0100 -5.7054 4.4635 18 16 10.1010 -7.1213 4.7483 19 6 10.7297 -6.7076 6.3415 20 1 10.4084 -5.7993 6.8296 21 6 11.6378 -7.5489 6.9691 22 7 12.0298 -8.6556 6.3739 23 14 12.3049 -7.1100 8.6578 24 1 11.1810 -7.0109 9.6234 25 1 13.2512 -8.1633 9.1053 26 1 13.0130 -5.8067 8.5869 27 6 6.6698 -4.7200 1.4729 28 6 2.0720 -0.7806 1.2231 29 1 -0.3633 0.4739 0.9118 30 1 -0.3633 0.5529 -0.8662 31 1 -0.3634 -1.0266 -0.0456 32 1 1.3220 -1.4833 -1.5737 33 1 2.3436 -0.0852 -2.0126 34 1 4.1965 -1.2129 -1.2924 35 1 3.1748 -2.6111 -0.8534 36 1 6.5382 -0.9763 1.9869 37 1 7.1448 -2.1797 0.8240 38 1 5.8168 -1.0876 0.3635 39 1 4.9361 -4.4099 2.8171 40 1 7.5633 -2.7656 2.9965 41 1 6.7343 -3.6945 4.3217 42 1 9.5948 -4.7859 4.4835 43 1 8.2502 -5.6699 5.2442 44 1 12.6642 -9.2438 6.8127 45 1 6.2021 -5.6368 1.1138 46 1 7.1784 -4.1650 0.6845 47 1 1.4593 -1.6596 1.4228 48 1 2.1228 -0.1390 2.1028 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506284666.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:31 Heat of formation + Delta-G solvation = -44.103350 kcal Electronic energy + Delta-G solvation = -26807.650956 eV Core-core repulsion = 22989.696009 eV Total energy + Delta-G solvation = -3817.954947 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.10055 -39.85065 -38.13440 -37.33661 -35.11731 -32.44054 -31.98360 -30.42200 -29.38147 -28.07651 -27.25410 -26.28069 -25.78591 -25.42122 -22.99698 -20.90386 -20.36242 -19.21645 -19.07942 -17.87636 -17.71106 -16.92677 -16.58467 -16.25769 -15.90418 -15.25130 -14.98520 -14.81087 -14.44014 -14.20736 -13.96388 -13.87931 -13.66070 -13.56600 -13.29742 -12.95059 -12.82973 -12.80054 -12.59997 -12.50796 -12.35236 -12.04162 -11.76514 -11.63370 -11.45124 -11.33530 -11.18245 -11.05332 -11.05239 -11.04601 -10.85627 -10.78152 -10.05668 -9.84624 -9.44209 -9.07092 -9.05585 -8.66549 -8.26174 -6.52138 -6.22476 -3.93740 2.22235 2.35104 2.80414 3.07279 3.22883 3.23909 3.28274 3.53213 3.93823 4.04208 4.13152 4.18911 4.20662 4.41594 4.51842 4.65178 4.76756 4.82697 4.85135 4.89484 4.93452 4.99621 5.06167 5.12570 5.13883 5.16539 5.17322 5.22887 5.32123 5.32394 5.43896 5.47082 5.54558 5.55644 5.58054 5.68216 5.74177 5.78599 5.79428 5.86906 5.92991 6.02356 6.11628 6.14948 6.95146 7.58143 7.73526 7.80823 8.33933 8.48775 9.22499 10.84902 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030575 B = 0.001785 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.546832 B =15685.044927 C =16100.771721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.075 0.925 4 C -0.119 4.119 5 C -0.109 4.109 6 C -0.116 4.116 7 H 0.097 0.903 8 C 0.524 3.476 9 O -0.533 6.533 10 N -0.608 5.608 11 C 0.069 3.931 12 C 0.110 3.890 13 C 0.094 3.906 14 N -0.648 5.648 15 C 0.560 3.440 16 O -0.512 6.512 17 C -0.145 4.145 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.274 1.274 27 C 0.097 3.903 28 C -0.105 4.105 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.133 0.867 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.269 0.731 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.641 22.796 -14.609 33.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 H 0.093 0.907 4 C -0.157 4.157 5 C -0.147 4.147 6 C -0.137 4.137 7 H 0.115 0.885 8 C 0.312 3.688 9 O -0.408 6.408 10 N -0.341 5.341 11 C -0.074 4.074 12 C 0.005 3.995 13 C -0.030 4.030 14 N -0.388 5.388 15 C 0.349 3.651 16 O -0.385 6.385 17 C -0.296 4.296 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.027 4.027 28 C -0.143 4.143 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.151 0.849 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.079 0.921 45 H 0.105 0.895 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.436 20.599 -15.303 32.191 hybrid contribution 0.473 1.508 1.880 2.457 sum -18.963 22.107 -13.423 32.070 Atomic orbital electron populations 1.21798 0.94704 1.02076 1.01661 1.21965 0.95864 0.99119 0.94596 0.90697 1.22208 0.96918 0.98870 0.97653 1.22052 0.98782 1.01281 0.92628 1.22238 0.99359 0.95989 0.96117 0.88476 1.20677 0.81544 0.86955 0.79578 1.90706 1.53307 1.48570 1.48263 1.47830 1.06169 1.21405 1.58683 1.21934 0.93261 0.92392 0.99820 1.23249 0.96500 0.85822 0.93906 1.23597 0.91916 0.87419 1.00104 1.49785 1.45893 1.22515 1.20593 1.20029 0.76478 0.80771 0.87810 1.90724 1.60505 1.30021 1.57245 1.23479 1.03303 1.07405 0.95376 1.85412 1.50807 1.23455 1.23614 1.22815 1.30971 1.11160 1.03514 0.90957 1.24990 0.95491 0.94470 0.98573 1.70009 1.31005 1.11216 1.38011 0.86217 0.78720 0.78226 0.82297 1.19912 1.20772 1.19945 1.23489 0.89730 0.99553 0.89957 1.22547 0.93640 1.00743 0.97366 0.92558 0.92685 0.92403 0.91334 0.91552 0.91069 0.91173 0.91912 0.90576 0.90241 0.84910 0.89392 0.89162 0.89299 0.89218 0.92096 0.89542 0.89859 0.89555 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.15 37.16 0.34 -0.38 16 2 C -0.10 -0.50 3.45 -88.96 -0.31 -0.80 16 3 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 4 C -0.12 -0.59 6.38 -25.61 -0.16 -0.75 16 5 C -0.11 -0.60 6.21 -25.62 -0.16 -0.76 16 6 C -0.12 -0.72 2.30 -90.10 -0.21 -0.93 16 7 H 0.10 0.41 6.55 -51.93 -0.34 0.07 16 8 C 0.52 4.91 6.69 -10.98 -0.07 4.84 16 9 O -0.53 -7.14 15.30 5.56 0.09 -7.05 16 10 N -0.61 -4.83 3.09 -175.73 -0.54 -5.38 16 11 C 0.07 0.32 8.64 59.85 0.52 0.84 16 12 C 0.11 1.09 4.41 -70.13 -0.31 0.78 16 13 C 0.09 0.95 8.11 -2.83 -0.02 0.93 16 14 N -0.65 -9.34 3.61 -178.30 -0.64 -9.99 16 15 C 0.56 11.01 8.08 -10.99 -0.09 10.92 16 16 O -0.51 -12.17 16.59 5.55 0.09 -12.07 16 17 C -0.15 -3.02 5.91 36.01 0.21 -2.80 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.37 9.50 30.94 0.29 -15.07 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 23 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 C 0.10 1.10 8.38 -2.96 -0.02 1.08 16 28 C -0.11 -0.71 5.60 -24.72 -0.14 -0.84 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 32 H 0.07 0.37 7.80 -51.93 -0.41 -0.04 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.29 7.91 -51.92 -0.41 -0.13 16 35 H 0.07 0.50 7.83 -51.93 -0.41 0.09 16 36 H 0.06 0.23 8.07 -51.93 -0.42 -0.18 16 37 H 0.08 0.35 6.54 -51.93 -0.34 0.01 16 38 H 0.08 0.23 5.79 -51.93 -0.30 -0.07 16 39 H 0.13 1.56 7.21 -51.93 -0.37 1.18 16 40 H 0.09 0.71 6.87 -51.93 -0.36 0.35 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 43 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 44 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.08 0.80 6.79 -51.93 -0.35 0.44 16 47 H 0.09 0.77 7.17 -51.93 -0.37 0.40 16 48 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 397.55 15.07 5.99 5.99 Total: -1.00 -36.58 397.55 -9.59 -46.17 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -7.85 Total: -3.78 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -0.23 Total: -0.94 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: -0.45 Total: -40.88 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: 0.18 Total: -19.13 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.58 -9.59 -46.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506284666.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.068 kcal (2) G-P(sol) polarization free energy of solvation -36.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds