Wall clock time and date at job start Sat Apr 11 2020 06:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 110.43783 * 2 1 4 4 C 1.54273 * 110.59482 * 237.38323 * 2 1 3 5 5 C 1.53869 * 106.59424 * 217.66075 * 4 2 1 6 6 C 1.54259 * 106.60271 * 359.97438 * 5 4 2 7 7 H 1.08998 * 110.60277 * 264.87924 * 6 5 4 8 8 C 1.50706 * 110.48573 * 142.28839 * 6 5 4 9 9 O 1.21281 * 120.00181 * 270.07316 * 8 6 5 10 10 N 1.34777 * 119.99743 * 90.34982 * 8 6 5 11 11 C 1.46504 * 119.99930 * 4.34574 * 10 8 6 12 12 C 1.46499 * 119.99835 * 184.34825 * 10 8 6 13 13 C 1.53953 * 113.73874 * 218.73772 * 12 10 8 14 14 N 1.47819 * 86.03414 * 222.08479 * 13 12 10 15 15 C 1.34772 * 134.45340 * 204.64600 * 14 13 12 16 16 O 1.21287 * 120.00156 * 179.86917 * 15 14 13 17 17 C 1.50702 * 120.00112 * 359.86578 * 15 14 13 18 18 S 1.81003 * 109.47171 * 179.97438 * 17 15 14 19 19 C 1.76202 * 100.00136 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99910 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99809 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00312 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99794 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46702 * 60.00350 * 23 21 19 25 25 H 1.48499 * 109.47046 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47225 * 300.00324 * 23 21 19 27 27 C 1.47580 * 91.05155 * 24.55107 * 14 13 12 28 28 C 1.54888 * 110.48091 * 122.54456 * 2 1 3 29 29 H 1.08998 * 109.47026 * 297.46314 * 1 2 3 30 30 H 1.08997 * 109.47045 * 57.45271 * 1 2 3 31 31 H 1.08995 * 109.47773 * 177.45752 * 1 2 3 32 32 H 1.08997 * 110.02925 * 336.94190 * 4 2 1 33 33 H 1.08994 * 110.03054 * 98.37306 * 4 2 1 34 34 H 1.09011 * 110.02997 * 240.71415 * 5 4 2 35 35 H 1.09001 * 110.03598 * 119.28631 * 5 4 2 36 36 H 1.09004 * 109.46841 * 94.32896 * 11 10 8 37 37 H 1.09003 * 109.46761 * 214.32392 * 11 10 8 38 38 H 1.08993 * 109.47552 * 334.32749 * 11 10 8 39 39 H 1.08997 * 112.94928 * 350.33057 * 12 10 8 40 40 H 1.09001 * 113.77028 * 336.35063 * 13 12 10 41 41 H 1.08999 * 113.76501 * 107.74670 * 13 12 10 42 42 H 1.08991 * 109.47471 * 299.99970 * 17 15 14 43 43 H 1.08996 * 109.46842 * 60.00383 * 17 15 14 44 44 H 0.97001 * 119.99709 * 180.02562 * 22 21 19 45 45 H 1.08996 * 113.77028 * 221.14891 * 27 14 13 46 46 H 1.09002 * 113.87047 * 89.76329 * 27 14 13 47 47 H 1.08995 * 110.75857 * 38.43826 * 28 2 1 48 48 H 1.08992 * 110.91740 * 275.13206 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0727 -0.7784 -1.2164 5 6 3.3200 -1.5377 -0.7314 6 6 3.4922 -1.1937 0.7625 7 1 4.1903 -0.3660 0.8875 8 6 3.9647 -2.4012 1.5307 9 8 3.1575 -3.1644 2.0173 10 7 5.2844 -2.6298 1.6816 11 6 6.2583 -1.6560 1.1820 12 6 5.7448 -3.8520 2.3452 13 6 6.9661 -3.6392 3.2581 14 7 7.4807 -4.9040 2.6921 15 6 8.3429 -5.8475 3.1196 16 8 8.5822 -6.8109 2.4228 17 6 9.0100 -5.7054 4.4635 18 16 10.1010 -7.1213 4.7483 19 6 10.7297 -6.7076 6.3415 20 1 10.4084 -5.7993 6.8296 21 6 11.6378 -7.5489 6.9691 22 7 12.0298 -8.6556 6.3739 23 14 12.3049 -7.1100 8.6578 24 1 11.1810 -7.0109 9.6234 25 1 13.2512 -8.1633 9.1053 26 1 13.0130 -5.8067 8.5869 27 6 6.6698 -4.7200 1.4729 28 6 2.0720 -0.7806 1.2231 29 1 -0.3633 0.4739 0.9118 30 1 -0.3633 0.5529 -0.8662 31 1 -0.3634 -1.0266 -0.0456 32 1 1.3220 -1.4833 -1.5737 33 1 2.3436 -0.0852 -2.0126 34 1 4.1965 -1.2129 -1.2924 35 1 3.1748 -2.6111 -0.8534 36 1 6.5382 -0.9763 1.9869 37 1 7.1448 -2.1797 0.8240 38 1 5.8168 -1.0876 0.3635 39 1 4.9361 -4.4099 2.8171 40 1 7.5633 -2.7656 2.9965 41 1 6.7343 -3.6945 4.3217 42 1 9.5948 -4.7859 4.4835 43 1 8.2502 -5.6699 5.2442 44 1 12.6642 -9.2438 6.8127 45 1 6.2021 -5.6368 1.1138 46 1 7.1784 -4.1650 0.6845 47 1 1.4593 -1.6596 1.4228 48 1 2.1228 -0.1390 2.1028 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506284666.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:31 Heat of formation + Delta-G solvation = -68.019841 kcal Electronic energy + Delta-G solvation = -26808.688053 eV Core-core repulsion = 22989.696009 eV Total energy + Delta-G solvation = -3818.992044 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.94921 -40.81565 -39.16660 -38.23762 -35.92913 -34.60323 -32.56535 -31.77812 -29.93549 -29.13307 -27.86785 -27.70152 -27.15756 -26.29260 -23.74932 -21.72043 -20.79397 -20.38327 -19.85531 -19.57127 -18.51352 -18.18171 -17.49820 -17.11131 -16.89137 -16.74493 -16.38297 -16.08993 -15.70494 -15.39279 -14.83473 -14.59917 -14.39727 -14.32022 -14.25134 -13.94398 -13.90035 -13.75344 -13.63613 -13.20156 -13.17616 -13.09461 -13.00078 -12.87281 -12.63780 -12.49052 -12.35900 -12.09377 -11.77620 -11.76563 -11.63818 -11.46904 -11.26711 -11.14358 -11.08330 -10.72170 -10.32390 -9.87457 -9.73667 -8.70820 -8.35993 -6.15539 1.13403 1.39108 1.43327 1.46347 1.51477 1.52277 1.73595 2.13895 2.25817 2.98102 3.12486 3.26413 3.42546 3.49235 3.62394 3.72941 3.83667 3.93968 4.12930 4.22991 4.23931 4.32434 4.38711 4.40178 4.42651 4.46049 4.48861 4.51342 4.60071 4.72141 4.72855 4.76192 4.77505 4.88694 4.89988 4.98781 5.03550 5.14477 5.18714 5.27480 5.36033 5.36877 5.39706 5.47096 5.60687 6.17921 6.28585 6.47082 7.01311 7.04806 7.10985 8.73084 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030575 B = 0.001785 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.546832 B =15685.044927 C =16100.771721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.093 0.907 4 C -0.118 4.118 5 C -0.108 4.108 6 C -0.108 4.108 7 H 0.129 0.871 8 C 0.519 3.481 9 O -0.583 6.583 10 N -0.601 5.601 11 C 0.058 3.942 12 C 0.121 3.879 13 C 0.099 3.901 14 N -0.646 5.646 15 C 0.558 3.442 16 O -0.567 6.567 17 C -0.119 4.119 18 S -0.151 6.151 19 C -0.548 4.548 20 H 0.084 0.916 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.263 1.263 25 H -0.278 1.278 26 H -0.260 1.260 27 C 0.096 3.904 28 C -0.109 4.109 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.046 0.954 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.123 0.877 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.272 0.728 45 H 0.070 0.930 46 H 0.112 0.888 47 H 0.055 0.945 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.462 26.938 -14.523 36.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.111 0.889 4 C -0.156 4.156 5 C -0.146 4.146 6 C -0.129 4.129 7 H 0.147 0.853 8 C 0.309 3.691 9 O -0.463 6.463 10 N -0.333 5.333 11 C -0.083 4.083 12 C 0.015 3.985 13 C -0.024 4.024 14 N -0.383 5.383 15 C 0.347 3.653 16 O -0.445 6.445 17 C -0.270 4.270 18 S 0.076 5.924 19 C -0.695 4.695 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.821 3.179 24 H -0.187 1.187 25 H -0.203 1.203 26 H -0.185 1.185 27 C -0.027 4.027 28 C -0.147 4.147 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.141 0.859 41 H 0.116 0.884 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.129 0.871 47 H 0.074 0.926 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.282 24.826 -15.240 34.934 hybrid contribution 0.273 0.313 1.754 1.802 sum -19.009 25.140 -13.486 34.282 Atomic orbital electron populations 1.21808 0.94969 1.01445 1.02154 1.21967 0.95692 0.99700 0.93659 0.88913 1.22220 0.96411 0.98928 0.98047 1.22068 1.00104 1.00041 0.92342 1.22306 0.99483 0.95276 0.95867 0.85280 1.21311 0.81467 0.87290 0.79033 1.90692 1.54721 1.50436 1.50407 1.47868 1.06496 1.20990 1.57928 1.22277 0.92695 0.92032 1.01306 1.22802 0.95589 0.86566 0.93507 1.23929 0.91595 0.86268 1.00596 1.49701 1.43746 1.22723 1.22136 1.19737 0.77193 0.81219 0.87131 1.90698 1.62888 1.32495 1.58419 1.23269 1.02358 1.04490 0.96845 1.85608 1.53436 1.28714 1.24616 1.23159 1.31229 1.11677 1.03482 0.89827 1.26147 0.95586 0.94109 1.03243 1.70181 1.31812 1.12581 1.40152 0.84988 0.78188 0.78383 0.76334 1.18727 1.20339 1.18457 1.23743 0.89535 0.99599 0.89864 1.22533 0.93810 0.99844 0.98482 0.92524 0.91668 0.93698 0.92416 0.89739 0.88607 0.93464 0.90041 0.90017 0.87916 0.87181 0.85914 0.88427 0.87153 0.87721 0.91936 0.91101 0.87058 0.92643 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.15 71.98 0.66 -0.67 16 2 C -0.09 -0.76 3.45 -9.72 -0.03 -0.79 16 3 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 4 C -0.12 -0.93 6.38 31.32 0.20 -0.73 16 5 C -0.11 -0.94 6.21 31.31 0.19 -0.75 16 6 C -0.11 -1.10 2.30 -10.45 -0.02 -1.12 16 7 H 0.13 0.50 6.55 -2.39 -0.02 0.49 16 8 C 0.52 9.10 6.69 87.66 0.59 9.68 16 9 O -0.58 -16.08 15.30 -3.03 -0.05 -16.13 16 10 N -0.60 -8.07 3.09 -828.26 -2.56 -10.63 16 11 C 0.06 0.28 8.64 127.77 1.10 1.38 16 12 C 0.12 2.23 4.41 46.75 0.21 2.44 16 13 C 0.10 1.71 8.11 86.44 0.70 2.41 16 14 N -0.65 -17.79 3.61 -836.41 -3.02 -20.81 16 15 C 0.56 21.99 8.08 87.66 0.71 22.70 16 16 O -0.57 -27.91 16.59 -3.05 -0.05 -27.96 16 17 C -0.12 -4.88 5.91 71.24 0.42 -4.46 16 18 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 19 C -0.55 -31.51 9.50 67.95 0.65 -30.87 16 20 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 21 C 0.01 0.80 5.49 84.86 0.47 1.27 16 22 N -0.91 -56.32 13.22 21.65 0.29 -56.03 16 23 Si 1.00 43.60 29.55 68.60 2.03 45.63 16 24 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 27 C 0.10 2.07 8.38 86.49 0.72 2.79 16 28 C -0.11 -1.35 5.60 31.90 0.18 -1.17 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.04 0.51 8.08 -2.39 -0.02 0.49 16 32 H 0.06 0.58 7.80 -2.39 -0.02 0.56 16 33 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.10 0.38 7.91 -2.38 -0.02 0.36 16 35 H 0.05 0.64 7.83 -2.39 -0.02 0.62 16 36 H 0.08 0.17 8.07 -2.38 -0.02 0.15 16 37 H 0.08 0.36 6.54 -2.39 -0.02 0.35 16 38 H 0.10 0.06 5.79 -2.39 -0.01 0.05 16 39 H 0.11 2.62 7.21 -2.39 -0.02 2.60 16 40 H 0.12 1.38 6.87 -2.39 -0.02 1.36 16 41 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 43 H 0.10 3.96 8.14 -2.40 -0.02 3.94 16 44 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 45 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.11 1.82 6.79 -2.39 -0.02 1.81 16 47 H 0.05 1.04 7.17 -2.39 -0.02 1.02 16 48 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -84.98 397.55 3.15 -81.82 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.95 Total: 11.69 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 6.74 Total: 2.12 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -5.30 Total: -87.47 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -0.10 Total: -44.08 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -84.98 3.15 -81.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506284666.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.805 kcal (2) G-P(sol) polarization free energy of solvation -84.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds