Wall clock time and date at job start Sat Apr 11 2020 06:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.02246 * 2 1 4 4 C 1.54471 * 110.12122 * 121.28638 * 2 1 3 5 5 C 1.54886 * 104.09829 * 142.72633 * 4 2 1 6 6 C 1.54884 * 102.91793 * 322.29616 * 5 4 2 7 7 H 1.08998 * 110.48673 * 279.04500 * 6 5 4 8 8 C 1.50704 * 110.48794 * 156.53102 * 6 5 4 9 9 O 1.21280 * 120.00013 * 271.81934 * 8 6 5 10 10 N 1.34774 * 119.99751 * 91.81577 * 8 6 5 11 11 C 1.46496 * 120.00203 * 4.96447 * 10 8 6 12 12 C 1.46505 * 119.99942 * 184.95834 * 10 8 6 13 13 C 1.53941 * 113.74514 * 218.74146 * 12 10 8 14 14 N 1.47812 * 86.03942 * 222.08626 * 13 12 10 15 15 C 1.34770 * 134.45555 * 204.64442 * 14 13 12 16 16 O 1.21287 * 119.99781 * 179.86667 * 15 14 13 17 17 C 1.50700 * 120.00395 * 359.86820 * 15 14 13 18 18 S 1.81000 * 109.47301 * 179.97438 * 17 15 14 19 19 C 1.76201 * 100.00026 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99712 * 359.97438 * 19 18 17 21 21 C 1.38794 * 120.00020 * 180.02562 * 19 18 17 22 22 N 1.31635 * 119.99873 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99933 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46974 * 59.99702 * 23 21 19 25 25 H 1.48498 * 109.46987 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47237 * 299.99793 * 23 21 19 27 27 C 1.47585 * 91.04718 * 24.55165 * 14 13 12 28 28 C 1.53880 * 110.03197 * 238.60794 * 2 1 3 29 29 H 1.08994 * 109.46940 * 181.38994 * 1 2 3 30 30 H 1.09002 * 109.46727 * 301.39412 * 1 2 3 31 31 H 1.08999 * 109.46894 * 61.38747 * 1 2 3 32 32 H 1.08996 * 110.40074 * 24.13923 * 4 2 1 33 33 H 1.09007 * 110.65466 * 261.43532 * 4 2 1 34 34 H 1.09007 * 110.75365 * 203.89391 * 5 4 2 35 35 H 1.08995 * 110.76003 * 80.71174 * 5 4 2 36 36 H 1.09002 * 109.47227 * 84.73636 * 11 10 8 37 37 H 1.09005 * 109.47121 * 204.73707 * 11 10 8 38 38 H 1.09002 * 109.47129 * 324.73600 * 11 10 8 39 39 H 1.09001 * 112.94195 * 350.34186 * 12 10 8 40 40 H 1.09000 * 113.76724 * 336.35321 * 13 12 10 41 41 H 1.09000 * 113.76838 * 107.74298 * 13 12 10 42 42 H 1.09001 * 109.47038 * 300.00034 * 17 15 14 43 43 H 1.08998 * 109.47195 * 59.99894 * 17 15 14 44 44 H 0.96995 * 119.99336 * 180.02562 * 22 21 19 45 45 H 1.09009 * 113.76381 * 221.15314 * 27 14 13 46 46 H 1.09000 * 113.87301 * 89.76985 * 27 14 13 47 47 H 1.08997 * 110.02807 * 121.42917 * 28 2 1 48 48 H 1.09002 * 110.06906 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0614 -0.7532 1.2395 5 6 3.3136 -1.5011 0.7184 6 6 2.8874 -1.9404 -0.7044 7 1 2.2790 -2.8436 -0.6586 8 6 4.0989 -2.1655 -1.5720 9 8 4.5770 -1.2427 -2.1972 10 7 4.6511 -3.3922 -1.6532 11 6 4.0117 -4.5289 -0.9859 12 6 5.8908 -3.5890 -2.4087 13 6 5.9286 -4.9055 -3.2057 14 7 7.3270 -5.0265 -2.7424 15 6 8.4236 -5.6581 -3.2059 16 8 9.4712 -5.5777 -2.6000 17 6 8.3482 -6.4643 -4.4769 18 16 9.9708 -7.1829 -4.8328 19 6 9.6028 -8.0461 -6.3242 20 1 8.6040 -8.0146 -6.7338 21 6 10.5962 -8.7672 -6.9719 22 7 11.8134 -8.8059 -6.4722 23 14 10.2058 -9.6828 -8.5526 24 1 9.7346 -8.7191 -9.5794 25 1 11.4285 -10.3687 -9.0422 26 1 9.1441 -10.6881 -8.2930 27 6 7.0408 -4.1763 -1.5705 28 6 2.0571 -0.7531 -1.2341 29 1 -0.3633 -1.0273 0.0249 30 1 -0.3633 0.5354 0.8773 31 1 -0.3633 0.4921 -0.9022 32 1 1.3168 -1.4621 1.6015 33 1 2.3363 -0.0516 2.0272 34 1 3.5325 -2.3686 1.3411 35 1 4.1730 -0.8321 0.6750 36 1 3.2397 -4.9435 -1.6342 37 1 4.7590 -5.2941 -0.7756 38 1 3.5607 -4.1950 -0.0515 39 1 6.1758 -2.7140 -2.9928 40 1 5.2669 -5.6768 -2.8116 41 1 5.8315 -4.7699 -4.2829 42 1 7.6152 -7.2623 -4.3580 43 1 8.0495 -5.8164 -5.3009 44 1 12.5077 -9.3095 -6.9251 45 1 7.8303 -3.4594 -1.3446 46 1 6.7066 -4.7313 -0.6939 47 1 2.6867 -0.0945 -1.8325 48 1 1.2234 -1.1184 -1.8337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506284670.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:36 Heat of formation + Delta-G solvation = -44.458638 kcal Electronic energy + Delta-G solvation = -26819.689254 eV Core-core repulsion = 23001.718901 eV Total energy + Delta-G solvation = -3817.970353 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.10384 -39.85983 -38.14783 -37.34564 -35.11566 -32.44086 -31.92797 -30.42324 -29.38918 -28.07497 -27.26113 -26.27543 -25.76840 -25.42057 -22.99749 -21.07871 -20.20011 -19.15825 -19.09399 -18.04228 -17.74302 -17.01659 -16.55934 -15.98403 -15.68300 -15.32070 -15.07244 -14.81337 -14.68916 -14.05503 -13.96801 -13.86118 -13.69725 -13.58805 -13.24464 -12.97024 -12.90762 -12.82160 -12.55140 -12.45225 -12.34117 -12.13173 -11.76540 -11.60613 -11.46130 -11.25894 -11.19596 -11.15296 -11.05350 -11.04641 -10.78577 -10.78262 -10.07136 -9.84709 -9.44439 -9.07148 -9.05832 -8.66694 -8.26265 -6.52207 -6.22553 -3.93810 2.21702 2.35034 2.80359 3.07126 3.22826 3.23871 3.28234 3.53115 3.95302 4.05703 4.12624 4.18942 4.23337 4.40960 4.50695 4.66122 4.76561 4.80733 4.83877 4.91536 4.99992 5.00853 5.02512 5.10574 5.12501 5.14742 5.17306 5.21791 5.31503 5.34106 5.44904 5.47078 5.53054 5.55113 5.57178 5.67962 5.71566 5.73206 5.85657 5.89804 5.93238 6.00398 6.11507 6.15475 6.95104 7.58096 7.73284 7.80756 8.33891 8.48578 9.22438 10.84849 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030102 B = 0.001792 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.956201 B =15620.951301 C =16088.605290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.073 0.927 4 C -0.118 4.118 5 C -0.110 4.110 6 C -0.114 4.114 7 H 0.096 0.904 8 C 0.524 3.476 9 O -0.533 6.533 10 N -0.607 5.607 11 C 0.070 3.930 12 C 0.110 3.890 13 C 0.094 3.906 14 N -0.648 5.648 15 C 0.560 3.440 16 O -0.512 6.512 17 C -0.145 4.145 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.274 1.274 27 C 0.097 3.903 28 C -0.111 4.111 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.133 0.867 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.269 0.731 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.952 14.147 15.613 33.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.092 0.908 4 C -0.156 4.156 5 C -0.148 4.148 6 C -0.135 4.135 7 H 0.114 0.886 8 C 0.313 3.687 9 O -0.409 6.409 10 N -0.341 5.341 11 C -0.073 4.073 12 C 0.005 3.995 13 C -0.031 4.031 14 N -0.388 5.388 15 C 0.349 3.651 16 O -0.385 6.385 17 C -0.296 4.296 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.027 4.027 28 C -0.149 4.149 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.151 0.849 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.079 0.921 45 H 0.105 0.895 46 H 0.101 0.899 47 H 0.103 0.897 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.739 14.572 16.069 32.158 hybrid contribution -1.502 -0.977 -1.698 2.468 sum -25.241 13.595 14.371 32.070 Atomic orbital electron populations 1.21893 0.94896 1.01779 1.01686 1.21780 0.95668 0.99743 0.94370 0.90821 1.22481 0.96727 0.99024 0.97341 1.22436 0.98792 1.00469 0.93068 1.22199 0.94690 1.00883 0.95730 0.88575 1.20665 0.84933 0.81801 0.81351 1.90699 1.63442 1.41793 1.44947 1.47819 1.25208 1.08703 1.52336 1.21912 0.98561 0.89226 0.97585 1.23255 0.83417 0.99166 0.93658 1.23610 0.82685 0.95563 1.01206 1.49787 1.09288 1.52777 1.26950 1.20028 0.81492 0.77584 0.85982 1.90724 1.28201 1.60391 1.59172 1.23481 1.08204 1.01532 0.96351 1.85412 1.04021 1.62204 1.31645 1.22815 0.99245 1.36180 1.10215 0.90958 1.24992 0.94426 0.95975 0.98139 1.70010 1.01525 1.39623 1.39083 0.86216 0.77902 0.79517 0.81819 1.19917 1.20773 1.19940 1.23501 0.96243 0.92306 0.90677 1.22229 0.98994 0.95911 0.97721 0.92581 0.92728 0.92630 0.91197 0.91256 0.90904 0.90712 0.91935 0.90261 0.90620 0.84906 0.89386 0.89153 0.89299 0.89217 0.92097 0.89531 0.89855 0.89717 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 8.85 37.16 0.33 -0.32 16 2 C -0.10 -0.53 3.50 -89.39 -0.31 -0.84 16 3 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.12 -0.55 6.39 -24.97 -0.16 -0.71 16 5 C -0.11 -0.61 6.22 -24.74 -0.15 -0.76 16 6 C -0.11 -0.72 2.34 -90.11 -0.21 -0.93 16 7 H 0.10 0.42 6.62 -51.93 -0.34 0.08 16 8 C 0.52 4.91 6.80 -10.98 -0.07 4.84 16 9 O -0.53 -7.14 15.12 5.56 0.08 -7.05 16 10 N -0.61 -4.82 3.09 -175.74 -0.54 -5.36 16 11 C 0.07 0.32 8.52 59.84 0.51 0.83 16 12 C 0.11 1.09 4.41 -70.14 -0.31 0.78 16 13 C 0.09 0.94 8.04 -2.84 -0.02 0.92 16 14 N -0.65 -9.31 3.61 -178.32 -0.64 -9.96 16 15 C 0.56 10.99 8.07 -10.99 -0.09 10.90 16 16 O -0.51 -12.15 16.59 5.55 0.09 -12.06 16 17 C -0.15 -3.01 5.91 36.01 0.21 -2.80 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.36 9.50 30.94 0.29 -15.06 16 20 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 23 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 27 C 0.10 1.10 8.33 -2.96 -0.02 1.07 16 28 C -0.11 -0.75 5.98 -25.61 -0.15 -0.90 16 29 H 0.06 0.23 8.12 -51.93 -0.42 -0.19 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.27 7.84 -51.93 -0.41 -0.14 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.31 7.80 -51.93 -0.40 -0.10 16 35 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 36 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.08 0.37 6.16 -51.93 -0.32 0.05 16 38 H 0.08 0.23 6.22 -51.93 -0.32 -0.10 16 39 H 0.13 1.56 7.20 -51.93 -0.37 1.18 16 40 H 0.09 0.70 6.71 -51.93 -0.35 0.35 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 43 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 44 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 46 H 0.08 0.79 6.92 -51.93 -0.36 0.43 16 47 H 0.08 0.78 6.82 -51.93 -0.35 0.42 16 48 H 0.07 0.42 7.67 -51.93 -0.40 0.02 16 LS Contribution 396.97 15.07 5.98 5.98 Total: -1.00 -36.53 396.97 -9.61 -46.15 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -7.82 Total: -3.79 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -0.26 Total: -0.97 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: -0.45 Total: -40.83 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.18 Total: -19.11 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.53 -9.61 -46.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506284670.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.687 kcal (2) G-P(sol) polarization free energy of solvation -36.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds