Wall clock time and date at job start Sat Apr 11 2020 06:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.02246 * 2 1 4 4 C 1.54471 * 110.12122 * 121.28638 * 2 1 3 5 5 C 1.54886 * 104.09829 * 142.72633 * 4 2 1 6 6 C 1.54884 * 102.91793 * 322.29616 * 5 4 2 7 7 H 1.08998 * 110.48673 * 279.04500 * 6 5 4 8 8 C 1.50704 * 110.48794 * 156.53102 * 6 5 4 9 9 O 1.21280 * 120.00013 * 271.81934 * 8 6 5 10 10 N 1.34774 * 119.99751 * 91.81577 * 8 6 5 11 11 C 1.46496 * 120.00203 * 4.96447 * 10 8 6 12 12 C 1.46505 * 119.99942 * 184.95834 * 10 8 6 13 13 C 1.53941 * 113.74514 * 218.74146 * 12 10 8 14 14 N 1.47812 * 86.03942 * 222.08626 * 13 12 10 15 15 C 1.34770 * 134.45555 * 204.64442 * 14 13 12 16 16 O 1.21287 * 119.99781 * 179.86667 * 15 14 13 17 17 C 1.50700 * 120.00395 * 359.86820 * 15 14 13 18 18 S 1.81000 * 109.47301 * 179.97438 * 17 15 14 19 19 C 1.76201 * 100.00026 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99712 * 359.97438 * 19 18 17 21 21 C 1.38794 * 120.00020 * 180.02562 * 19 18 17 22 22 N 1.31635 * 119.99873 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99933 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46974 * 59.99702 * 23 21 19 25 25 H 1.48498 * 109.46987 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47237 * 299.99793 * 23 21 19 27 27 C 1.47585 * 91.04718 * 24.55165 * 14 13 12 28 28 C 1.53880 * 110.03197 * 238.60794 * 2 1 3 29 29 H 1.08994 * 109.46940 * 181.38994 * 1 2 3 30 30 H 1.09002 * 109.46727 * 301.39412 * 1 2 3 31 31 H 1.08999 * 109.46894 * 61.38747 * 1 2 3 32 32 H 1.08996 * 110.40074 * 24.13923 * 4 2 1 33 33 H 1.09007 * 110.65466 * 261.43532 * 4 2 1 34 34 H 1.09007 * 110.75365 * 203.89391 * 5 4 2 35 35 H 1.08995 * 110.76003 * 80.71174 * 5 4 2 36 36 H 1.09002 * 109.47227 * 84.73636 * 11 10 8 37 37 H 1.09005 * 109.47121 * 204.73707 * 11 10 8 38 38 H 1.09002 * 109.47129 * 324.73600 * 11 10 8 39 39 H 1.09001 * 112.94195 * 350.34186 * 12 10 8 40 40 H 1.09000 * 113.76724 * 336.35321 * 13 12 10 41 41 H 1.09000 * 113.76838 * 107.74298 * 13 12 10 42 42 H 1.09001 * 109.47038 * 300.00034 * 17 15 14 43 43 H 1.08998 * 109.47195 * 59.99894 * 17 15 14 44 44 H 0.96995 * 119.99336 * 180.02562 * 22 21 19 45 45 H 1.09009 * 113.76381 * 221.15314 * 27 14 13 46 46 H 1.09000 * 113.87301 * 89.76985 * 27 14 13 47 47 H 1.08997 * 110.02807 * 121.42917 * 28 2 1 48 48 H 1.09002 * 110.06906 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0614 -0.7532 1.2395 5 6 3.3136 -1.5011 0.7184 6 6 2.8874 -1.9404 -0.7044 7 1 2.2790 -2.8436 -0.6586 8 6 4.0989 -2.1655 -1.5720 9 8 4.5770 -1.2427 -2.1972 10 7 4.6511 -3.3922 -1.6532 11 6 4.0117 -4.5289 -0.9859 12 6 5.8908 -3.5890 -2.4087 13 6 5.9286 -4.9055 -3.2057 14 7 7.3270 -5.0265 -2.7424 15 6 8.4236 -5.6581 -3.2059 16 8 9.4712 -5.5777 -2.6000 17 6 8.3482 -6.4643 -4.4769 18 16 9.9708 -7.1829 -4.8328 19 6 9.6028 -8.0461 -6.3242 20 1 8.6040 -8.0146 -6.7338 21 6 10.5962 -8.7672 -6.9719 22 7 11.8134 -8.8059 -6.4722 23 14 10.2058 -9.6828 -8.5526 24 1 9.7346 -8.7191 -9.5794 25 1 11.4285 -10.3687 -9.0422 26 1 9.1441 -10.6881 -8.2930 27 6 7.0408 -4.1763 -1.5705 28 6 2.0571 -0.7531 -1.2341 29 1 -0.3633 -1.0273 0.0249 30 1 -0.3633 0.5354 0.8773 31 1 -0.3633 0.4921 -0.9022 32 1 1.3168 -1.4621 1.6015 33 1 2.3363 -0.0516 2.0272 34 1 3.5325 -2.3686 1.3411 35 1 4.1730 -0.8321 0.6750 36 1 3.2397 -4.9435 -1.6342 37 1 4.7590 -5.2941 -0.7756 38 1 3.5607 -4.1950 -0.0515 39 1 6.1758 -2.7140 -2.9928 40 1 5.2669 -5.6768 -2.8116 41 1 5.8315 -4.7699 -4.2829 42 1 7.6152 -7.2623 -4.3580 43 1 8.0495 -5.8164 -5.3009 44 1 12.5077 -9.3095 -6.9251 45 1 7.8303 -3.4594 -1.3446 46 1 6.7066 -4.7313 -0.6939 47 1 2.6867 -0.0945 -1.8325 48 1 1.2234 -1.1184 -1.8337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506284670.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:35 Heat of formation + Delta-G solvation = -68.334713 kcal Electronic energy + Delta-G solvation = -26820.724598 eV Core-core repulsion = 23001.718901 eV Total energy + Delta-G solvation = -3819.005698 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.95216 -40.82155 -39.17649 -38.25184 -35.92693 -34.60263 -32.51169 -31.76349 -29.94155 -29.12953 -27.87332 -27.70069 -27.14757 -26.24623 -23.74424 -21.80539 -20.77876 -20.33914 -19.77178 -19.58192 -18.69813 -18.19322 -17.60218 -17.09540 -16.88986 -16.52669 -16.20497 -15.89419 -15.83474 -15.60255 -14.81533 -14.72306 -14.36790 -14.30594 -14.20580 -13.91998 -13.86093 -13.76697 -13.65798 -13.30339 -13.18867 -12.99728 -12.87292 -12.81731 -12.64609 -12.61897 -12.35920 -12.06743 -11.77598 -11.67397 -11.62745 -11.55260 -11.24074 -11.14325 -11.09942 -10.74114 -10.32332 -9.87193 -9.73541 -8.70739 -8.35987 -6.15487 1.13476 1.39120 1.43328 1.46470 1.50970 1.52222 1.73636 2.14017 2.25840 2.98114 3.12598 3.26630 3.43502 3.49589 3.63657 3.74585 3.83607 3.94319 4.11692 4.22979 4.24274 4.35752 4.36172 4.38953 4.42377 4.46132 4.51871 4.54922 4.58392 4.70092 4.72638 4.75672 4.76567 4.89636 4.95684 5.00518 5.03214 5.14691 5.17120 5.30539 5.36634 5.39024 5.39749 5.49350 5.59193 6.17972 6.28601 6.47073 7.01452 7.04836 7.10946 8.73108 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030102 B = 0.001792 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.956201 B =15620.951301 C =16088.605290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.060 0.940 4 C -0.113 4.113 5 C -0.109 4.109 6 C -0.106 4.106 7 H 0.128 0.872 8 C 0.519 3.481 9 O -0.583 6.583 10 N -0.601 5.601 11 C 0.059 3.941 12 C 0.121 3.879 13 C 0.098 3.902 14 N -0.646 5.646 15 C 0.558 3.442 16 O -0.567 6.567 17 C -0.119 4.119 18 S -0.151 6.151 19 C -0.548 4.548 20 H 0.084 0.916 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.263 1.263 25 H -0.278 1.278 26 H -0.260 1.260 27 C 0.096 3.904 28 C -0.112 4.112 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.123 0.877 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.272 0.728 45 H 0.071 0.929 46 H 0.112 0.888 47 H 0.052 0.948 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.809 12.892 16.046 36.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.079 0.921 4 C -0.150 4.150 5 C -0.146 4.146 6 C -0.127 4.127 7 H 0.146 0.854 8 C 0.309 3.691 9 O -0.463 6.463 10 N -0.332 5.332 11 C -0.082 4.082 12 C 0.015 3.985 13 C -0.024 4.024 14 N -0.383 5.383 15 C 0.347 3.653 16 O -0.445 6.445 17 C -0.270 4.270 18 S 0.076 5.924 19 C -0.695 4.695 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.821 3.179 24 H -0.187 1.187 25 H -0.203 1.203 26 H -0.184 1.184 27 C -0.027 4.027 28 C -0.150 4.150 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.128 0.872 40 H 0.141 0.859 41 H 0.115 0.885 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.130 0.870 47 H 0.071 0.929 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -27.683 13.323 16.532 34.888 hybrid contribution -0.421 -0.461 -1.738 1.847 sum -28.104 12.862 14.794 34.266 Atomic orbital electron populations 1.21868 0.93820 1.02475 1.01774 1.21775 0.96530 0.99050 0.94299 0.92140 1.22477 0.96575 0.99215 0.96776 1.22448 0.98373 1.00936 0.92892 1.22264 0.93407 1.01857 0.95200 0.85439 1.21281 0.85426 0.81428 0.80953 1.90686 1.65014 1.43494 1.47079 1.47855 1.24170 1.09457 1.51764 1.22258 0.99097 0.88048 0.98800 1.22809 0.84129 0.98246 0.93299 1.23943 0.80207 0.96285 1.01993 1.49701 1.09767 1.50933 1.27916 1.19732 0.82137 0.77898 0.85504 1.90699 1.30565 1.62705 1.60519 1.23271 1.03782 1.02187 0.97735 1.85607 1.10647 1.63511 1.32597 1.23159 0.99912 1.36256 1.10210 0.89832 1.26148 0.94036 0.96787 1.02123 1.70182 1.02820 1.40711 1.41011 0.84988 0.78040 0.78205 0.76662 1.18742 1.20343 1.18444 1.23756 0.96255 0.91813 0.90890 1.22213 0.98812 0.95882 0.98101 0.91546 0.92158 0.93073 0.89364 0.91058 0.88776 0.93071 0.89971 0.89718 0.88333 0.87192 0.85887 0.88452 0.87152 0.87732 0.91939 0.91074 0.87015 0.92936 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.85 71.98 0.64 -0.35 16 2 C -0.10 -0.95 3.50 -10.00 -0.03 -0.99 16 3 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 4 C -0.11 -0.78 6.39 31.74 0.20 -0.58 16 5 C -0.11 -0.96 6.22 31.88 0.20 -0.76 16 6 C -0.11 -1.09 2.34 -10.47 -0.02 -1.12 16 7 H 0.13 0.53 6.62 -2.39 -0.02 0.52 16 8 C 0.52 9.11 6.80 87.66 0.60 9.70 16 9 O -0.58 -16.09 15.12 -3.03 -0.05 -16.14 16 10 N -0.60 -8.02 3.09 -828.30 -2.56 -10.58 16 11 C 0.06 0.28 8.52 127.77 1.09 1.36 16 12 C 0.12 2.22 4.41 46.74 0.21 2.42 16 13 C 0.10 1.70 8.04 86.44 0.69 2.39 16 14 N -0.65 -17.72 3.61 -836.48 -3.02 -20.74 16 15 C 0.56 21.94 8.07 87.66 0.71 22.65 16 16 O -0.57 -27.85 16.59 -3.05 -0.05 -27.90 16 17 C -0.12 -4.88 5.91 71.24 0.42 -4.46 16 18 S -0.15 -8.53 20.57 -56.49 -1.16 -9.70 16 19 C -0.55 -31.49 9.50 67.95 0.65 -30.85 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 21 C 0.01 0.79 5.49 84.86 0.47 1.26 16 22 N -0.91 -56.30 13.22 21.65 0.29 -56.01 16 23 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 24 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 27 C 0.10 2.06 8.33 86.48 0.72 2.78 16 28 C -0.11 -1.43 5.98 31.32 0.19 -1.24 16 29 H 0.07 0.34 8.12 -2.39 -0.02 0.32 16 30 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.09 0.33 7.84 -2.39 -0.02 0.31 16 33 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.09 0.44 7.80 -2.38 -0.02 0.42 16 35 H 0.05 0.70 8.05 -2.39 -0.02 0.68 16 36 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.08 0.37 6.16 -2.38 -0.01 0.35 16 38 H 0.10 0.07 6.22 -2.39 -0.01 0.05 16 39 H 0.11 2.61 7.20 -2.39 -0.02 2.59 16 40 H 0.12 1.37 6.71 -2.39 -0.02 1.35 16 41 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 43 H 0.10 3.95 8.14 -2.40 -0.02 3.93 16 44 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 45 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 46 H 0.11 1.80 6.92 -2.39 -0.02 1.79 16 47 H 0.05 1.02 6.82 -2.39 -0.02 1.00 16 48 H 0.08 0.81 7.67 -2.39 -0.02 0.80 16 Total: -1.00 -84.87 396.97 3.13 -81.74 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.95 Total: 11.48 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 6.71 Total: 2.23 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -5.30 Total: -87.32 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -0.10 Total: -44.03 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.70 kcal Total: -84.87 3.13 -81.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506284670.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.400 kcal (2) G-P(sol) polarization free energy of solvation -84.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds