Wall clock time and date at job start Sat Apr 11 2020 06:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.01495 * 2 1 4 4 C 1.54262 * 110.02868 * 238.60828 * 2 1 3 5 5 C 1.54892 * 104.19353 * 217.10251 * 4 2 1 6 6 C 1.54889 * 102.74581 * 37.94885 * 5 4 2 7 7 H 1.08994 * 110.49255 * 80.86375 * 6 5 4 8 8 C 1.50705 * 110.48384 * 203.38118 * 6 5 4 9 9 O 1.21279 * 120.00656 * 95.81608 * 8 6 5 10 10 N 1.34777 * 119.99440 * 275.81102 * 8 6 5 11 11 C 1.46498 * 119.99892 * 185.02736 * 10 8 6 12 12 C 1.46497 * 120.00465 * 5.03460 * 10 8 6 13 13 C 1.53497 * 114.21113 * 119.99406 * 12 10 8 14 14 N 1.47069 * 87.98368 * 87.71667 * 13 12 10 15 15 C 1.34774 * 136.05952 * 207.08050 * 14 13 12 16 16 O 1.21280 * 120.00018 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00003 * 180.02562 * 15 14 13 18 18 S 1.81005 * 109.47209 * 180.02562 * 17 15 14 19 19 C 1.76203 * 100.00064 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99437 * 0.02562 * 19 18 17 21 21 C 1.38790 * 119.99780 * 179.72273 * 19 18 17 22 22 N 1.31626 * 120.00473 * 0.28077 * 21 19 18 23 23 Si 1.86801 * 119.99810 * 180.27835 * 21 19 18 24 24 H 1.48502 * 109.47393 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47276 * 120.00196 * 23 21 19 26 26 H 1.48503 * 109.47166 * 239.99914 * 23 21 19 27 27 C 1.47070 * 87.88086 * 27.34574 * 14 13 12 28 28 C 1.53874 * 110.03256 * 121.44288 * 2 1 3 29 29 H 1.09000 * 109.47363 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46846 * 299.93917 * 1 2 3 31 31 H 1.09006 * 109.47104 * 59.93526 * 1 2 3 32 32 H 1.09004 * 110.48631 * 98.43163 * 4 2 1 33 33 H 1.08998 * 110.60047 * 335.84162 * 4 2 1 34 34 H 1.08993 * 110.75783 * 279.62753 * 5 4 2 35 35 H 1.09005 * 110.75391 * 156.25818 * 5 4 2 36 36 H 1.08994 * 109.47743 * 270.97107 * 11 10 8 37 37 H 1.09006 * 109.47349 * 30.97562 * 11 10 8 38 38 H 1.09000 * 109.47246 * 150.97022 * 11 10 8 39 39 H 1.09008 * 113.27751 * 346.93105 * 12 10 8 40 40 H 1.09000 * 113.46334 * 332.94192 * 13 12 10 41 41 H 1.08995 * 113.52614 * 202.51062 * 13 12 10 42 42 H 1.09001 * 109.47453 * 60.00145 * 17 15 14 43 43 H 1.09004 * 109.47337 * 300.00106 * 17 15 14 44 44 H 0.97001 * 120.00081 * 179.97438 * 22 21 19 45 45 H 1.09001 * 113.46897 * 87.43914 * 27 14 13 46 46 H 1.08999 * 113.46269 * 217.87309 * 27 14 13 47 47 H 1.09005 * 110.03368 * 359.97438 * 28 2 1 48 48 H 1.09001 * 110.03229 * 238.57182 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7549 -1.2372 5 6 3.3136 -1.5004 -0.7198 6 6 2.8874 -1.9410 0.7026 7 1 2.2790 -2.8441 0.6560 8 6 4.0989 -2.1667 1.5700 9 8 4.4941 -1.2839 2.3016 10 7 4.7432 -3.3500 1.5328 11 6 5.8524 -3.6093 2.4541 12 6 4.3346 -4.3767 0.5710 13 6 5.4379 -4.7939 -0.4112 14 7 5.8724 -5.7893 0.5805 15 6 7.0292 -6.4054 0.8946 16 8 8.0381 -6.1561 0.2695 17 6 7.0689 -7.4041 2.0224 18 16 8.7504 -8.0512 2.1962 19 6 8.5135 -9.1604 3.5447 20 1 7.5363 -9.2649 3.9926 21 6 9.5812 -9.9045 4.0269 22 7 10.7720 -9.7775 3.4807 23 14 9.3283 -11.0862 5.4514 24 1 7.9080 -11.0444 5.8831 25 1 9.6733 -12.4642 5.0187 26 1 10.2024 -10.6898 6.5846 27 6 4.4874 -5.8214 1.0743 28 6 2.0571 -0.7541 1.2334 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5129 0.8906 31 1 -0.3634 0.5149 -0.8895 32 1 2.3297 -0.0527 -2.0255 33 1 1.3151 -1.4651 -1.5994 34 1 4.1709 -0.8288 -0.6756 35 1 3.5325 -2.3673 -1.3433 36 1 6.7862 -3.2763 2.0014 37 1 5.6861 -3.0669 3.3848 38 1 5.9100 -4.6778 2.6617 39 1 3.3732 -4.1686 0.1012 40 1 6.1753 -4.0121 -0.5932 41 1 5.0566 -5.2359 -1.3316 42 1 6.3842 -8.2241 1.8060 43 1 6.7700 -6.9164 2.9503 44 1 11.5183 -10.2973 3.8181 45 1 3.8546 -6.5344 0.5459 46 1 4.4151 -5.9151 2.1579 47 1 1.2229 -1.1197 1.8322 48 1 2.6867 -0.0962 1.8324 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506284671.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:38 Heat of formation + Delta-G solvation = -35.871898 kcal Electronic energy + Delta-G solvation = -27564.819073 eV Core-core repulsion = 23747.221069 eV Total energy + Delta-G solvation = -3817.598004 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.29823 -39.87485 -38.04754 -37.55669 -34.51881 -32.46839 -31.98095 -30.61403 -29.42386 -28.18670 -27.32113 -26.13837 -25.48766 -25.20109 -22.78724 -21.63400 -20.28024 -19.58998 -18.46496 -18.03463 -17.68504 -16.84283 -16.15118 -15.96990 -15.80264 -15.34072 -15.14497 -14.88307 -14.83854 -14.18213 -13.98043 -13.86017 -13.67714 -13.43600 -13.30784 -13.12467 -12.69891 -12.59987 -12.54420 -12.18432 -12.06490 -11.98234 -11.92672 -11.52231 -11.33879 -11.19992 -11.13623 -11.09874 -11.09136 -11.05097 -10.79496 -10.72678 -10.01201 -9.85474 -9.48233 -9.11171 -8.94258 -8.71632 -8.28707 -6.55381 -6.25480 -3.96840 2.31434 2.60415 2.65149 2.98112 3.19144 3.21483 3.28207 3.49508 3.92798 3.97868 4.14198 4.15987 4.23683 4.37089 4.49731 4.65234 4.81930 4.84010 4.90184 5.05750 5.08410 5.09965 5.12352 5.15827 5.18426 5.22542 5.31852 5.38784 5.40929 5.44223 5.49663 5.51677 5.55684 5.58967 5.64942 5.76416 5.79180 5.79840 5.86890 5.88389 5.95821 6.05618 6.07309 6.19993 7.10375 7.56077 7.73081 7.90781 8.31509 8.44917 9.19961 10.81971 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026062 B = 0.002124 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.122157 B =13181.311896 C =13546.515855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.073 0.927 4 C -0.118 4.118 5 C -0.112 4.112 6 C -0.115 4.115 7 H 0.098 0.902 8 C 0.523 3.477 9 O -0.533 6.533 10 N -0.592 5.592 11 C 0.085 3.915 12 C 0.096 3.904 13 C 0.091 3.909 14 N -0.652 5.652 15 C 0.562 3.438 16 O -0.510 6.510 17 C -0.145 4.145 18 S -0.059 6.059 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.279 1.279 27 C 0.090 3.910 28 C -0.111 4.111 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.124 0.876 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.268 0.732 45 H 0.100 0.900 46 H 0.085 0.915 47 H 0.068 0.932 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.693 15.987 -8.965 29.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.156 4.156 5 C -0.150 4.150 6 C -0.136 4.136 7 H 0.116 0.884 8 C 0.312 3.688 9 O -0.409 6.409 10 N -0.323 5.323 11 C -0.057 4.057 12 C -0.010 4.010 13 C -0.033 4.033 14 N -0.392 5.392 15 C 0.352 3.648 16 O -0.383 6.383 17 C -0.296 4.296 18 S 0.168 5.832 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.746 3.254 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.034 4.034 28 C -0.148 4.148 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.142 0.858 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.118 0.882 46 H 0.104 0.896 47 H 0.086 0.914 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -21.529 16.663 -9.403 28.802 hybrid contribution -1.223 -1.361 1.594 2.427 sum -22.752 15.302 -7.809 28.509 Atomic orbital electron populations 1.21895 0.94928 1.01792 1.01622 1.21749 0.95667 0.99694 0.94466 0.90877 1.22446 0.96762 0.99050 0.97323 1.22491 0.98714 1.00621 0.93154 1.22206 0.94698 1.00817 0.95861 0.88431 1.20579 0.84448 0.81098 0.82710 1.90695 1.67253 1.41870 1.41086 1.47489 1.34410 1.14312 1.36136 1.21718 0.88566 1.02265 0.93175 1.22532 0.98704 0.88484 0.91289 1.23376 0.95428 0.91213 0.93307 1.49733 1.07846 1.44796 1.36781 1.19941 0.80704 0.79781 0.84366 1.90731 1.32412 1.62436 1.52746 1.23491 1.08403 0.99556 0.98120 1.85443 1.01009 1.52034 1.44755 1.22882 0.98565 1.27645 1.19239 0.90871 1.24997 0.94437 0.96788 0.97367 1.70022 1.00156 1.39686 1.40326 0.86108 0.78402 0.79985 0.80945 1.19613 1.20544 1.20515 1.23418 0.83041 0.95102 1.01883 1.22217 0.98993 0.95980 0.97655 0.92551 0.92699 0.92749 0.91342 0.91121 0.90788 0.90675 0.92460 0.90665 0.90620 0.85809 0.90065 0.88801 0.89289 0.89432 0.92178 0.88225 0.89643 0.91355 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 8.84 37.16 0.33 -0.37 16 2 C -0.10 -0.57 3.50 -89.50 -0.31 -0.89 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 4 C -0.12 -0.60 6.36 -25.07 -0.16 -0.76 16 5 C -0.11 -0.67 6.11 -24.74 -0.15 -0.83 16 6 C -0.11 -0.81 2.26 -90.11 -0.20 -1.01 16 7 H 0.10 0.47 6.65 -51.93 -0.35 0.13 16 8 C 0.52 5.64 6.87 -10.98 -0.08 5.56 16 9 O -0.53 -7.88 15.15 5.56 0.08 -7.80 16 10 N -0.59 -6.01 3.12 -173.56 -0.54 -6.55 16 11 C 0.08 1.06 9.51 59.85 0.57 1.63 16 12 C 0.10 0.69 4.38 -67.68 -0.30 0.40 16 13 C 0.09 0.86 8.24 -8.51 -0.07 0.79 16 14 N -0.65 -8.41 2.41 -185.09 -0.45 -8.85 16 15 C 0.56 10.41 7.65 -10.99 -0.08 10.33 16 16 O -0.51 -11.69 16.64 5.56 0.09 -11.60 16 17 C -0.15 -2.89 5.98 36.00 0.22 -2.68 16 18 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 19 C -0.54 -15.09 9.50 30.94 0.29 -14.80 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.08 5.49 -17.44 -0.10 1.99 16 22 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 23 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 27 C 0.09 0.74 7.45 -8.38 -0.06 0.68 16 28 C -0.11 -0.82 5.96 -25.62 -0.15 -0.97 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.29 7.86 -51.93 -0.41 -0.12 16 34 H 0.07 0.57 8.05 -51.93 -0.42 0.16 16 35 H 0.07 0.34 7.83 -51.93 -0.41 -0.07 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.97 7.53 -51.93 -0.39 0.57 16 38 H 0.08 0.95 5.33 -51.93 -0.28 0.68 16 39 H 0.12 0.48 5.55 -51.92 -0.29 0.19 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.09 1.62 8.14 -51.91 -0.42 1.19 16 44 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.09 0.73 7.31 -51.93 -0.38 0.35 16 47 H 0.07 0.46 7.67 -51.93 -0.40 0.06 16 48 H 0.08 0.84 6.75 -51.93 -0.35 0.49 16 LS Contribution 396.30 15.07 5.97 5.97 Total: -1.00 -36.51 396.30 -9.45 -45.96 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -7.86 Total: -3.39 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.26 Total: -0.93 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: -0.25 Total: -40.68 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: 0.18 Total: -19.40 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.51 -9.45 -45.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506284671.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.093 kcal (2) G-P(sol) polarization free energy of solvation -36.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds