Wall clock time and date at job start Sat Apr 11 2020 06:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.01495 * 2 1 4 4 C 1.54262 * 110.02868 * 238.60828 * 2 1 3 5 5 C 1.54892 * 104.19353 * 217.10251 * 4 2 1 6 6 C 1.54889 * 102.74581 * 37.94885 * 5 4 2 7 7 H 1.08994 * 110.49255 * 80.86375 * 6 5 4 8 8 C 1.50705 * 110.48384 * 203.38118 * 6 5 4 9 9 O 1.21279 * 120.00656 * 95.81608 * 8 6 5 10 10 N 1.34777 * 119.99440 * 275.81102 * 8 6 5 11 11 C 1.46498 * 119.99892 * 185.02736 * 10 8 6 12 12 C 1.46497 * 120.00465 * 5.03460 * 10 8 6 13 13 C 1.53497 * 114.21113 * 119.99406 * 12 10 8 14 14 N 1.47069 * 87.98368 * 87.71667 * 13 12 10 15 15 C 1.34774 * 136.05952 * 207.08050 * 14 13 12 16 16 O 1.21280 * 120.00018 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00003 * 180.02562 * 15 14 13 18 18 S 1.81005 * 109.47209 * 180.02562 * 17 15 14 19 19 C 1.76203 * 100.00064 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99437 * 0.02562 * 19 18 17 21 21 C 1.38790 * 119.99780 * 179.72273 * 19 18 17 22 22 N 1.31626 * 120.00473 * 0.28077 * 21 19 18 23 23 Si 1.86801 * 119.99810 * 180.27835 * 21 19 18 24 24 H 1.48502 * 109.47393 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47276 * 120.00196 * 23 21 19 26 26 H 1.48503 * 109.47166 * 239.99914 * 23 21 19 27 27 C 1.47070 * 87.88086 * 27.34574 * 14 13 12 28 28 C 1.53874 * 110.03256 * 121.44288 * 2 1 3 29 29 H 1.09000 * 109.47363 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46846 * 299.93917 * 1 2 3 31 31 H 1.09006 * 109.47104 * 59.93526 * 1 2 3 32 32 H 1.09004 * 110.48631 * 98.43163 * 4 2 1 33 33 H 1.08998 * 110.60047 * 335.84162 * 4 2 1 34 34 H 1.08993 * 110.75783 * 279.62753 * 5 4 2 35 35 H 1.09005 * 110.75391 * 156.25818 * 5 4 2 36 36 H 1.08994 * 109.47743 * 270.97107 * 11 10 8 37 37 H 1.09006 * 109.47349 * 30.97562 * 11 10 8 38 38 H 1.09000 * 109.47246 * 150.97022 * 11 10 8 39 39 H 1.09008 * 113.27751 * 346.93105 * 12 10 8 40 40 H 1.09000 * 113.46334 * 332.94192 * 13 12 10 41 41 H 1.08995 * 113.52614 * 202.51062 * 13 12 10 42 42 H 1.09001 * 109.47453 * 60.00145 * 17 15 14 43 43 H 1.09004 * 109.47337 * 300.00106 * 17 15 14 44 44 H 0.97001 * 120.00081 * 179.97438 * 22 21 19 45 45 H 1.09001 * 113.46897 * 87.43914 * 27 14 13 46 46 H 1.08999 * 113.46269 * 217.87309 * 27 14 13 47 47 H 1.09005 * 110.03368 * 359.97438 * 28 2 1 48 48 H 1.09001 * 110.03229 * 238.57182 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7549 -1.2372 5 6 3.3136 -1.5004 -0.7198 6 6 2.8874 -1.9410 0.7026 7 1 2.2790 -2.8441 0.6560 8 6 4.0989 -2.1667 1.5700 9 8 4.4941 -1.2839 2.3016 10 7 4.7432 -3.3500 1.5328 11 6 5.8524 -3.6093 2.4541 12 6 4.3346 -4.3767 0.5710 13 6 5.4379 -4.7939 -0.4112 14 7 5.8724 -5.7893 0.5805 15 6 7.0292 -6.4054 0.8946 16 8 8.0381 -6.1561 0.2695 17 6 7.0689 -7.4041 2.0224 18 16 8.7504 -8.0512 2.1962 19 6 8.5135 -9.1604 3.5447 20 1 7.5363 -9.2649 3.9926 21 6 9.5812 -9.9045 4.0269 22 7 10.7720 -9.7775 3.4807 23 14 9.3283 -11.0862 5.4514 24 1 7.9080 -11.0444 5.8831 25 1 9.6733 -12.4642 5.0187 26 1 10.2024 -10.6898 6.5846 27 6 4.4874 -5.8214 1.0743 28 6 2.0571 -0.7541 1.2334 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5129 0.8906 31 1 -0.3634 0.5149 -0.8895 32 1 2.3297 -0.0527 -2.0255 33 1 1.3151 -1.4651 -1.5994 34 1 4.1709 -0.8288 -0.6756 35 1 3.5325 -2.3673 -1.3433 36 1 6.7862 -3.2763 2.0014 37 1 5.6861 -3.0669 3.3848 38 1 5.9100 -4.6778 2.6617 39 1 3.3732 -4.1686 0.1012 40 1 6.1753 -4.0121 -0.5932 41 1 5.0566 -5.2359 -1.3316 42 1 6.3842 -8.2241 1.8060 43 1 6.7700 -6.9164 2.9503 44 1 11.5183 -10.2973 3.8181 45 1 3.8546 -6.5344 0.5459 46 1 4.4151 -5.9151 2.1579 47 1 1.2229 -1.1197 1.8322 48 1 2.6867 -0.0962 1.8324 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506284671.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:38 Heat of formation + Delta-G solvation = -59.598400 kcal Electronic energy + Delta-G solvation = -27565.847931 eV Core-core repulsion = 23747.221069 eV Total energy + Delta-G solvation = -3818.626863 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.16452 -40.78536 -39.10492 -38.44304 -35.50345 -34.61072 -32.51404 -31.98194 -29.97096 -29.33258 -28.19825 -27.68424 -26.86625 -25.75703 -23.67142 -22.27552 -20.98025 -20.50257 -19.74139 -19.15252 -18.66540 -18.10163 -17.02740 -16.98832 -16.93709 -16.88500 -16.45333 -15.91094 -15.74739 -15.59933 -15.12131 -14.69164 -14.44407 -14.37621 -14.19179 -14.17516 -13.95063 -13.52952 -13.46999 -13.22540 -13.13229 -13.08309 -12.93395 -12.70572 -12.59901 -12.58227 -12.15396 -12.04187 -11.73933 -11.65027 -11.59967 -11.51007 -11.23715 -11.18203 -10.97798 -10.82017 -10.30799 -9.87057 -9.75714 -8.70634 -8.37076 -6.15894 1.19727 1.39941 1.41850 1.48436 1.53584 1.56352 1.81586 1.97784 2.24813 2.97302 3.17202 3.23695 3.34256 3.53488 3.63624 3.74750 3.90125 3.97253 4.12243 4.20843 4.30344 4.37335 4.40391 4.44210 4.46210 4.49541 4.56390 4.58843 4.61729 4.66832 4.75017 4.77115 4.79689 4.83866 4.92551 5.01849 5.06178 5.17708 5.20252 5.27876 5.37292 5.39547 5.40910 5.47495 5.62801 6.17593 6.30415 6.58041 7.04260 7.06760 7.09830 8.72404 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026062 B = 0.002124 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.122157 B =13181.311896 C =13546.515855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.058 0.942 4 C -0.112 4.112 5 C -0.111 4.111 6 C -0.106 4.106 7 H 0.137 0.863 8 C 0.519 3.481 9 O -0.583 6.583 10 N -0.593 5.593 11 C 0.092 3.908 12 C 0.110 3.890 13 C 0.087 3.913 14 N -0.654 5.654 15 C 0.561 3.439 16 O -0.570 6.570 17 C -0.118 4.118 18 S -0.153 6.153 19 C -0.544 4.544 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.256 1.256 25 H -0.273 1.273 26 H -0.275 1.275 27 C 0.089 3.911 28 C -0.112 4.112 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.101 0.899 36 H 0.029 0.971 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.179 0.821 40 H 0.057 0.943 41 H 0.134 0.866 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.271 0.729 45 H 0.145 0.855 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.233 14.807 -9.782 33.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.077 0.923 4 C -0.149 4.149 5 C -0.149 4.149 6 C -0.127 4.127 7 H 0.155 0.845 8 C 0.310 3.690 9 O -0.463 6.463 10 N -0.323 5.323 11 C -0.052 4.052 12 C 0.005 3.995 13 C -0.036 4.036 14 N -0.391 5.391 15 C 0.350 3.650 16 O -0.449 6.449 17 C -0.269 4.269 18 S 0.074 5.926 19 C -0.692 4.692 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.179 1.179 25 H -0.198 1.198 26 H -0.200 1.200 27 C -0.033 4.033 28 C -0.150 4.150 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.066 0.934 35 H 0.120 0.880 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.196 0.804 40 H 0.075 0.925 41 H 0.152 0.848 42 H 0.126 0.874 43 H 0.119 0.881 44 H 0.080 0.920 45 H 0.163 0.837 46 H 0.104 0.896 47 H 0.096 0.904 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -26.161 15.497 -10.244 32.086 hybrid contribution 0.085 -0.836 1.803 1.989 sum -26.076 14.660 -8.441 31.083 Atomic orbital electron populations 1.21871 0.93754 1.02593 1.01700 1.21738 0.96590 0.98947 0.94347 0.92324 1.22441 0.96558 0.99290 0.96638 1.22531 0.98320 1.01286 0.92792 1.22317 0.92936 1.02196 0.95253 0.84522 1.21377 0.85078 0.80283 0.82269 1.90680 1.68741 1.43535 1.43320 1.47622 1.33429 1.15176 1.36101 1.21468 0.88617 1.01764 0.93317 1.22789 0.99819 0.87183 0.89693 1.23792 0.95291 0.89889 0.94665 1.49716 1.08185 1.43606 1.37554 1.19550 0.81794 0.79889 0.83742 1.90702 1.35012 1.64612 1.54585 1.23270 1.03219 1.00573 0.99844 1.85638 1.08305 1.53183 1.45425 1.23204 0.99141 1.27594 1.19213 0.89894 1.26145 0.93940 0.98716 1.00433 1.70190 1.01293 1.41030 1.42267 0.84894 0.79080 0.77140 0.76759 1.17908 1.19826 1.20046 1.23894 0.80216 0.96523 1.02710 1.22204 0.98787 0.95889 0.98132 0.91321 0.93259 0.92131 0.91193 0.88844 0.93445 0.88041 0.95177 0.91677 0.90633 0.80385 0.92461 0.84814 0.87366 0.88054 0.91977 0.83739 0.89636 0.90389 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.84 71.98 0.64 -0.35 16 2 C -0.10 -0.96 3.50 -10.07 -0.04 -1.00 16 3 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 4 C -0.11 -0.74 6.36 31.67 0.20 -0.54 16 5 C -0.11 -0.99 6.11 31.89 0.19 -0.79 16 6 C -0.11 -1.15 2.26 -10.47 -0.02 -1.18 16 7 H 0.14 0.45 6.65 -2.39 -0.02 0.43 16 8 C 0.52 10.60 6.87 87.66 0.60 11.20 16 9 O -0.58 -17.94 15.15 -3.03 -0.05 -17.98 16 10 N -0.59 -11.03 3.12 -821.40 -2.56 -13.59 16 11 C 0.09 2.35 9.51 127.77 1.22 3.56 16 12 C 0.11 1.09 4.38 45.55 0.20 1.29 16 13 C 0.09 1.35 8.24 83.17 0.69 2.04 16 14 N -0.65 -15.41 2.41 -857.89 -2.07 -17.48 16 15 C 0.56 20.80 7.65 87.66 0.67 21.47 16 16 O -0.57 -27.25 16.64 -3.03 -0.05 -27.30 16 17 C -0.12 -4.68 5.98 71.24 0.43 -4.26 16 18 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 19 C -0.54 -31.01 9.50 67.95 0.65 -30.37 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 21 C 0.01 0.70 5.49 84.86 0.47 1.17 16 22 N -0.91 -56.19 13.22 21.65 0.29 -55.91 16 23 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 24 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 26 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 27 C 0.09 1.04 7.45 83.26 0.62 1.66 16 28 C -0.11 -1.49 5.96 31.32 0.19 -1.31 16 29 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.09 0.26 7.86 -2.39 -0.02 0.24 16 34 H 0.05 0.69 8.05 -2.39 -0.02 0.67 16 35 H 0.10 0.38 7.83 -2.38 -0.02 0.36 16 36 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 1.77 7.53 -2.38 -0.02 1.75 16 38 H 0.08 1.90 5.33 -2.39 -0.01 1.88 16 39 H 0.18 0.00 5.55 -2.38 -0.01 -0.01 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 43 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 44 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 45 H 0.15 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.09 1.10 7.31 -2.39 -0.02 1.08 16 47 H 0.08 0.86 7.67 -2.38 -0.02 0.85 16 48 H 0.05 1.04 6.75 -2.39 -0.02 1.02 16 Total: -1.00 -88.39 396.30 4.06 -84.32 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 0.95 Total: 9.43 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 6.69 Total: 2.62 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -4.34 Total: -86.98 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -0.10 Total: -45.28 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -88.39 4.06 -84.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506284671.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.726 kcal (2) G-P(sol) polarization free energy of solvation -88.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds