Wall clock time and date at job start Sat Apr 11 2020 06:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 115.55833 * 2 1 4 4 C 1.52994 * 117.50254 * 214.30814 * 2 1 3 5 5 C 1.52992 * 60.00372 * 252.51311 * 4 2 1 6 6 H 1.08997 * 117.50270 * 107.51254 * 5 4 2 7 7 C 1.50703 * 117.49663 * 252.51218 * 5 4 2 8 8 O 1.21280 * 119.99788 * 68.61077 * 7 5 4 9 9 N 1.34771 * 120.00071 * 248.60594 * 7 5 4 10 10 C 1.46503 * 119.99934 * 359.97438 * 9 7 5 11 11 C 1.46498 * 120.00166 * 180.02562 * 9 7 5 12 12 C 1.53002 * 109.46946 * 263.70004 * 11 9 7 13 13 H 1.09001 * 110.00114 * 303.63806 * 12 11 9 14 14 C 1.54328 * 109.88061 * 64.73179 * 12 11 9 15 15 C 1.55154 * 102.94225 * 141.60936 * 14 12 11 16 16 C 1.54903 * 101.58266 * 324.49642 * 15 14 12 17 17 N 1.47026 * 109.88526 * 182.53815 * 12 11 9 18 18 C 1.34769 * 125.64665 * 61.60468 * 17 12 11 19 19 O 1.21288 * 120.00253 * 354.82311 * 18 17 12 20 20 C 1.50700 * 120.00036 * 174.81965 * 18 17 12 21 21 S 1.80998 * 109.47177 * 180.02562 * 20 18 17 22 22 C 1.76209 * 99.99908 * 179.97438 * 21 20 18 23 23 H 1.08003 * 119.99801 * 0.02562 * 22 21 20 24 24 C 1.38796 * 119.99843 * 180.02562 * 22 21 20 25 25 N 1.31628 * 120.00101 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99714 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47043 * 90.00314 * 26 24 22 28 28 H 1.48499 * 109.47116 * 209.99882 * 26 24 22 29 29 H 1.48492 * 109.47117 * 330.00331 * 26 24 22 30 30 H 1.08996 * 109.47156 * 274.30798 * 1 2 3 31 31 H 1.08997 * 109.47146 * 34.31430 * 1 2 3 32 32 H 1.09008 * 109.46741 * 154.31162 * 1 2 3 33 33 H 1.09005 * 117.49706 * 145.01803 * 4 2 1 34 34 H 1.09005 * 117.49577 * 0.02562 * 4 2 1 35 35 H 1.09000 * 109.47474 * 266.17405 * 10 9 7 36 36 H 1.09001 * 109.46742 * 26.17718 * 10 9 7 37 37 H 1.08998 * 109.47229 * 146.17748 * 10 9 7 38 38 H 1.08997 * 109.47303 * 143.70315 * 11 9 7 39 39 H 1.08993 * 109.47324 * 23.70332 * 11 9 7 40 40 H 1.08999 * 110.71621 * 23.24165 * 14 12 11 41 41 H 1.09002 * 110.71771 * 259.97720 * 14 12 11 42 42 H 1.09003 * 110.99890 * 206.42019 * 15 14 12 43 43 H 1.08999 * 111.00258 * 82.57697 * 15 14 12 44 44 H 1.09007 * 110.36609 * 155.84522 * 16 15 14 45 45 H 1.08999 * 110.37008 * 278.06057 * 16 15 14 46 46 H 1.08999 * 109.47073 * 300.00614 * 20 18 17 47 47 H 1.08997 * 109.46904 * 60.00195 * 20 18 17 48 48 H 0.97006 * 120.00172 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7649 5 6 2.2365 -1.1210 0.7650 6 1 1.6116 -1.8587 1.2683 7 6 3.5293 -0.7810 1.4609 8 8 3.9718 0.3466 1.4011 9 7 4.1936 -1.7300 2.1497 10 6 3.6587 -3.0920 2.2224 11 6 5.4501 -1.3994 2.8266 12 6 6.6288 -1.7823 1.9293 13 1 6.5695 -2.8385 1.6664 14 6 6.6150 -0.9211 0.6488 15 6 8.1208 -0.6382 0.4041 16 6 8.6522 -0.5076 1.8532 17 7 7.8954 -1.5105 2.6246 18 6 8.2976 -2.0826 3.7766 19 8 7.5515 -2.8271 4.3768 20 6 9.6743 -1.7974 4.3192 21 16 9.9136 -2.7068 5.8657 22 6 11.5547 -2.2044 6.2652 23 1 12.0854 -1.5259 5.6137 24 6 12.1652 -2.6807 7.4171 25 7 11.5185 -3.5080 8.2108 26 14 13.9046 -2.1476 7.8410 27 1 13.8568 -0.9183 8.6728 28 1 14.5840 -3.2304 8.5967 29 1 14.6558 -1.8700 6.5905 30 1 -0.3633 0.0772 1.0247 31 1 -0.3633 0.8488 -0.5793 32 1 -0.3633 -0.9262 -0.4455 33 1 3.1716 -0.8750 -1.2682 34 1 1.6113 -1.8582 -1.2685 35 1 3.0584 -3.1988 3.1259 36 1 3.0371 -3.2853 1.3481 37 1 4.4826 -3.8051 2.2473 38 1 5.5134 -1.9509 3.7646 39 1 5.4819 -0.3294 3.0313 40 1 6.0700 0.0081 0.8149 41 1 6.1865 -1.4769 -0.1852 42 1 8.2589 0.2915 -0.1480 43 1 8.5960 -1.4719 -0.1128 44 1 9.7191 -0.7288 1.8875 45 1 8.4606 0.4937 2.2388 46 1 10.4235 -2.1126 3.5930 47 1 9.7767 -0.7285 4.5063 48 1 11.9453 -3.8411 9.0157 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508260264.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:43 Heat of formation + Delta-G solvation = -43.856543 kcal Electronic energy + Delta-G solvation = -27555.821604 eV Core-core repulsion = 23737.877359 eV Total energy + Delta-G solvation = -3817.944245 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.70839 -39.69490 -37.53078 -36.87512 -35.63498 -32.43237 -31.84392 -30.92410 -29.16191 -28.60534 -27.07014 -26.08686 -25.49183 -23.77206 -22.60703 -21.23950 -20.91535 -19.26467 -18.98553 -17.74274 -17.57205 -16.86405 -16.56298 -15.86872 -15.60578 -14.97009 -14.80544 -14.53873 -14.46406 -14.36183 -13.82456 -13.71050 -13.58978 -13.28954 -13.17786 -13.04706 -12.84674 -12.64941 -12.54493 -12.43311 -12.29361 -12.02713 -11.78194 -11.72372 -11.32909 -11.06593 -11.02936 -11.00553 -10.82519 -10.75680 -10.73673 -10.40159 -9.94987 -9.81679 -9.38075 -9.07441 -9.05184 -8.37229 -8.23950 -6.50437 -6.21957 -3.92479 2.24287 2.58970 3.00316 3.06329 3.22365 3.27185 3.31010 3.45955 3.63530 4.14309 4.20002 4.37852 4.39915 4.43920 4.48132 4.69345 4.81576 4.91752 4.93228 5.01465 5.11745 5.13356 5.14800 5.22333 5.25065 5.30730 5.32652 5.36483 5.49906 5.51498 5.55078 5.62791 5.66074 5.67588 5.69127 5.76798 5.82203 5.88027 5.93027 5.98418 6.10793 6.14597 6.27257 6.54349 7.17851 7.59446 7.67749 7.98138 8.35102 8.53304 9.23455 10.85454 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026379 B = 0.002178 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.179341 B =12854.993841 C =13435.685456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 H 0.117 0.883 4 C -0.148 4.148 5 C -0.192 4.192 6 H 0.123 0.877 7 C 0.543 3.457 8 O -0.538 6.538 9 N -0.606 5.606 10 C 0.076 3.924 11 C 0.101 3.899 12 C 0.129 3.871 13 H 0.072 0.928 14 C -0.131 4.131 15 C -0.132 4.132 16 C 0.101 3.899 17 N -0.620 5.620 18 C 0.550 3.450 19 O -0.516 6.516 20 C -0.147 4.147 21 S -0.060 6.060 22 C -0.535 4.535 23 H 0.072 0.928 24 C 0.073 3.927 25 N -0.868 5.868 26 Si 0.919 3.081 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.272 1.272 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.603 4.784 -20.787 28.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 H 0.135 0.865 4 C -0.185 4.185 5 C -0.213 4.213 6 H 0.141 0.859 7 C 0.332 3.668 8 O -0.416 6.416 9 N -0.339 5.339 10 C -0.067 4.067 11 C -0.022 4.022 12 C 0.024 3.976 13 H 0.090 0.910 14 C -0.169 4.169 15 C -0.170 4.170 16 C -0.022 4.022 17 N -0.358 5.358 18 C 0.339 3.661 19 O -0.390 6.390 20 C -0.298 4.298 21 S 0.166 5.834 22 C -0.683 4.683 23 H 0.091 0.909 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.203 1.203 28 H -0.207 1.207 29 H -0.197 1.197 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.425 4.102 -19.649 27.933 hybrid contribution 2.077 0.959 -0.292 2.306 sum -17.348 5.061 -19.941 26.911 Atomic orbital electron populations 1.21403 0.92233 1.02206 1.02247 1.22384 0.95219 0.95118 1.01378 0.86483 1.23092 1.03143 1.01615 0.90696 1.22336 0.97901 1.05299 0.95754 0.85889 1.19686 0.84537 0.84442 0.78179 1.90658 1.68628 1.20922 1.61371 1.47682 1.23435 1.10736 1.52049 1.21861 1.00080 0.82599 1.02134 1.21959 0.81238 1.03026 0.95982 1.21818 0.84122 0.99601 0.92045 0.90980 1.22831 0.96870 1.01203 0.95979 1.22765 0.95697 1.02550 0.96003 1.22306 0.96832 0.92298 0.90773 1.48554 1.19335 1.43678 1.24210 1.20057 0.88698 0.79004 0.78376 1.90676 1.55282 1.36177 1.56888 1.23515 0.95096 1.05728 1.05426 1.85358 1.19576 1.59951 1.18472 1.22860 1.00072 1.33646 1.11704 0.90933 1.24990 0.98771 0.94654 0.95167 1.70017 1.37346 1.29992 1.12938 0.86167 0.82420 0.78353 0.78560 1.20260 1.20748 1.19695 0.91923 0.91659 0.92363 0.88284 0.87815 0.92257 0.90712 0.90637 0.88610 0.89377 0.88800 0.91036 0.89939 0.90754 0.90202 0.91265 0.89266 0.89287 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.19 37.16 0.38 -0.29 16 2 C -0.12 -0.91 5.92 -90.62 -0.54 -1.45 16 3 H 0.12 1.07 7.67 -51.93 -0.40 0.67 16 4 C -0.15 -0.95 9.88 -26.74 -0.26 -1.21 16 5 C -0.19 -1.52 4.51 -91.77 -0.41 -1.94 16 6 H 0.12 0.77 7.19 -51.93 -0.37 0.40 16 7 C 0.54 6.13 6.89 -10.99 -0.08 6.05 16 8 O -0.54 -7.73 13.78 5.56 0.08 -7.66 16 9 N -0.61 -6.65 2.74 -181.57 -0.50 -7.15 16 10 C 0.08 0.62 10.13 59.85 0.61 1.22 16 11 C 0.10 1.37 5.00 -4.04 -0.02 1.35 16 12 C 0.13 1.68 3.16 -66.95 -0.21 1.47 16 13 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 14 C -0.13 -1.40 5.73 -24.90 -0.14 -1.55 16 15 C -0.13 -1.26 7.08 -24.59 -0.17 -1.43 16 16 C 0.10 1.19 6.74 -2.53 -0.02 1.17 16 17 N -0.62 -9.27 3.07 -163.01 -0.50 -9.77 16 18 C 0.55 10.58 7.69 -10.99 -0.08 10.50 16 19 O -0.52 -11.51 14.67 5.55 0.08 -11.43 16 20 C -0.15 -3.04 5.09 36.01 0.18 -2.86 16 21 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 22 C -0.53 -15.28 9.50 30.94 0.29 -14.99 16 23 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 24 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 25 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 26 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.26 7.90 -51.92 -0.41 -0.16 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.47 8.05 -51.93 -0.42 0.05 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.43 6.42 -51.93 -0.33 0.09 16 37 H 0.07 0.64 8.00 -51.93 -0.42 0.23 16 38 H 0.10 1.51 6.58 -51.93 -0.34 1.17 16 39 H 0.09 1.32 7.18 -51.93 -0.37 0.95 16 40 H 0.09 1.16 5.74 -51.93 -0.30 0.86 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.90 7.48 -51.92 -0.39 0.51 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.09 1.72 7.96 -51.92 -0.41 1.31 16 47 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 48 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 399.50 15.07 6.02 6.02 Total: -1.00 -34.88 399.50 -9.82 -44.70 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -7.93 Total: 0.08 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -0.57 Total: -1.96 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: -0.26 Total: -42.37 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: 0.16 Total: -19.08 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.88 -9.82 -44.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508260264.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.846 kcal (2) G-P(sol) polarization free energy of solvation -34.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds