Wall clock time and date at job start Sat Apr 11 2020 06:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 115.55833 * 2 1 4 4 C 1.52994 * 117.50254 * 214.30814 * 2 1 3 5 5 C 1.52992 * 60.00372 * 252.51311 * 4 2 1 6 6 H 1.08997 * 117.50270 * 107.51254 * 5 4 2 7 7 C 1.50703 * 117.49663 * 252.51218 * 5 4 2 8 8 O 1.21280 * 119.99788 * 68.61077 * 7 5 4 9 9 N 1.34771 * 120.00071 * 248.60594 * 7 5 4 10 10 C 1.46503 * 119.99934 * 359.97438 * 9 7 5 11 11 C 1.46498 * 120.00166 * 180.02562 * 9 7 5 12 12 C 1.53002 * 109.46946 * 263.70004 * 11 9 7 13 13 H 1.09001 * 110.00114 * 303.63806 * 12 11 9 14 14 C 1.54328 * 109.88061 * 64.73179 * 12 11 9 15 15 C 1.55154 * 102.94225 * 141.60936 * 14 12 11 16 16 C 1.54903 * 101.58266 * 324.49642 * 15 14 12 17 17 N 1.47026 * 109.88526 * 182.53815 * 12 11 9 18 18 C 1.34769 * 125.64665 * 61.60468 * 17 12 11 19 19 O 1.21288 * 120.00253 * 354.82311 * 18 17 12 20 20 C 1.50700 * 120.00036 * 174.81965 * 18 17 12 21 21 S 1.80998 * 109.47177 * 180.02562 * 20 18 17 22 22 C 1.76209 * 99.99908 * 179.97438 * 21 20 18 23 23 H 1.08003 * 119.99801 * 0.02562 * 22 21 20 24 24 C 1.38796 * 119.99843 * 180.02562 * 22 21 20 25 25 N 1.31628 * 120.00101 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99714 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47043 * 90.00314 * 26 24 22 28 28 H 1.48499 * 109.47116 * 209.99882 * 26 24 22 29 29 H 1.48492 * 109.47117 * 330.00331 * 26 24 22 30 30 H 1.08996 * 109.47156 * 274.30798 * 1 2 3 31 31 H 1.08997 * 109.47146 * 34.31430 * 1 2 3 32 32 H 1.09008 * 109.46741 * 154.31162 * 1 2 3 33 33 H 1.09005 * 117.49706 * 145.01803 * 4 2 1 34 34 H 1.09005 * 117.49577 * 0.02562 * 4 2 1 35 35 H 1.09000 * 109.47474 * 266.17405 * 10 9 7 36 36 H 1.09001 * 109.46742 * 26.17718 * 10 9 7 37 37 H 1.08998 * 109.47229 * 146.17748 * 10 9 7 38 38 H 1.08997 * 109.47303 * 143.70315 * 11 9 7 39 39 H 1.08993 * 109.47324 * 23.70332 * 11 9 7 40 40 H 1.08999 * 110.71621 * 23.24165 * 14 12 11 41 41 H 1.09002 * 110.71771 * 259.97720 * 14 12 11 42 42 H 1.09003 * 110.99890 * 206.42019 * 15 14 12 43 43 H 1.08999 * 111.00258 * 82.57697 * 15 14 12 44 44 H 1.09007 * 110.36609 * 155.84522 * 16 15 14 45 45 H 1.08999 * 110.37008 * 278.06057 * 16 15 14 46 46 H 1.08999 * 109.47073 * 300.00614 * 20 18 17 47 47 H 1.08997 * 109.46904 * 60.00195 * 20 18 17 48 48 H 0.97006 * 120.00172 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7649 5 6 2.2365 -1.1210 0.7650 6 1 1.6116 -1.8587 1.2683 7 6 3.5293 -0.7810 1.4609 8 8 3.9718 0.3466 1.4011 9 7 4.1936 -1.7300 2.1497 10 6 3.6587 -3.0920 2.2224 11 6 5.4501 -1.3994 2.8266 12 6 6.6288 -1.7823 1.9293 13 1 6.5695 -2.8385 1.6664 14 6 6.6150 -0.9211 0.6488 15 6 8.1208 -0.6382 0.4041 16 6 8.6522 -0.5076 1.8532 17 7 7.8954 -1.5105 2.6246 18 6 8.2976 -2.0826 3.7766 19 8 7.5515 -2.8271 4.3768 20 6 9.6743 -1.7974 4.3192 21 16 9.9136 -2.7068 5.8657 22 6 11.5547 -2.2044 6.2652 23 1 12.0854 -1.5259 5.6137 24 6 12.1652 -2.6807 7.4171 25 7 11.5185 -3.5080 8.2108 26 14 13.9046 -2.1476 7.8410 27 1 13.8568 -0.9183 8.6728 28 1 14.5840 -3.2304 8.5967 29 1 14.6558 -1.8700 6.5905 30 1 -0.3633 0.0772 1.0247 31 1 -0.3633 0.8488 -0.5793 32 1 -0.3633 -0.9262 -0.4455 33 1 3.1716 -0.8750 -1.2682 34 1 1.6113 -1.8582 -1.2685 35 1 3.0584 -3.1988 3.1259 36 1 3.0371 -3.2853 1.3481 37 1 4.4826 -3.8051 2.2473 38 1 5.5134 -1.9509 3.7646 39 1 5.4819 -0.3294 3.0313 40 1 6.0700 0.0081 0.8149 41 1 6.1865 -1.4769 -0.1852 42 1 8.2589 0.2915 -0.1480 43 1 8.5960 -1.4719 -0.1128 44 1 9.7191 -0.7288 1.8875 45 1 8.4606 0.4937 2.2388 46 1 10.4235 -2.1126 3.5930 47 1 9.7767 -0.7285 4.5063 48 1 11.9453 -3.8411 9.0157 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508260264.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:42 Heat of formation + Delta-G solvation = -64.938743 kcal Electronic energy + Delta-G solvation = -27556.735797 eV Core-core repulsion = 23737.877359 eV Total energy + Delta-G solvation = -3818.858437 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.70719 -40.82372 -38.65059 -37.74521 -36.57061 -34.60267 -33.12892 -31.89521 -30.25878 -29.52288 -27.89029 -27.67480 -26.96413 -24.67677 -23.59944 -22.07375 -21.64205 -20.47348 -19.99868 -19.53546 -18.57522 -18.01383 -17.73739 -16.89960 -16.81383 -16.68378 -16.37418 -15.97422 -15.41338 -15.31485 -14.99660 -14.87090 -14.50011 -14.20690 -14.20082 -14.02926 -13.88224 -13.66828 -13.57026 -13.55126 -13.18738 -13.17629 -12.92123 -12.88148 -12.82484 -12.62922 -12.28960 -12.20153 -11.97013 -11.75732 -11.71257 -11.32404 -11.15813 -10.99174 -10.96407 -10.75801 -10.30844 -10.10204 -9.50836 -8.69061 -8.36286 -6.14642 1.19713 1.39418 1.41336 1.43364 1.50907 1.54116 1.78587 2.20089 2.26012 2.86134 2.97835 3.20003 3.39533 3.51250 3.57296 3.77609 3.81155 3.87985 3.90267 4.09574 4.12012 4.19724 4.23526 4.28356 4.29184 4.42814 4.44329 4.52941 4.58657 4.71444 4.74281 4.77230 4.84158 4.86775 4.90174 4.95649 4.95875 5.01175 5.06474 5.17641 5.23431 5.33391 5.40185 5.42825 5.47490 6.18177 6.30994 6.36724 7.04718 7.05287 7.11015 8.72913 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026379 B = 0.002178 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.179341 B =12854.993841 C =13435.685456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.130 4.130 3 H 0.093 0.907 4 C -0.129 4.129 5 C -0.198 4.198 6 H 0.145 0.855 7 C 0.538 3.462 8 O -0.576 6.576 9 N -0.606 5.606 10 C 0.073 3.927 11 C 0.111 3.889 12 C 0.129 3.871 13 H 0.071 0.929 14 C -0.119 4.119 15 C -0.119 4.119 16 C 0.089 3.911 17 N -0.613 5.613 18 C 0.548 3.452 19 O -0.556 6.556 20 C -0.121 4.121 21 S -0.145 6.145 22 C -0.547 4.547 23 H 0.082 0.918 24 C 0.014 3.986 25 N -0.910 5.910 26 Si 0.999 3.001 27 H -0.268 1.268 28 H -0.276 1.276 29 H -0.258 1.258 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.132 0.868 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.107 0.893 47 H 0.103 0.897 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.525 5.257 -23.540 30.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.149 4.149 3 H 0.111 0.889 4 C -0.167 4.167 5 C -0.219 4.219 6 H 0.162 0.838 7 C 0.328 3.672 8 O -0.456 6.456 9 N -0.338 5.338 10 C -0.069 4.069 11 C -0.014 4.014 12 C 0.024 3.976 13 H 0.090 0.910 14 C -0.157 4.157 15 C -0.157 4.157 16 C -0.033 4.033 17 N -0.348 5.348 18 C 0.337 3.663 19 O -0.434 6.434 20 C -0.272 4.272 21 S 0.083 5.917 22 C -0.695 4.695 23 H 0.100 0.900 24 C -0.191 4.191 25 N -0.547 5.547 26 Si 0.820 3.180 27 H -0.194 1.194 28 H -0.202 1.202 29 H -0.182 1.182 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.150 0.850 35 H 0.082 0.918 36 H 0.125 0.875 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.125 0.875 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.093 0.907 46 H 0.125 0.875 47 H 0.121 0.879 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.368 4.586 -22.454 30.006 hybrid contribution 1.957 0.869 0.483 2.195 sum -17.411 5.455 -21.971 28.559 Atomic orbital electron populations 1.21396 0.90528 1.03366 1.02357 1.22410 0.96469 0.94188 1.01854 0.88909 1.23203 1.02971 1.01207 0.89273 1.22368 0.96333 1.06377 0.96800 0.83757 1.20320 0.85337 0.83779 0.77739 1.90637 1.69785 1.22453 1.62725 1.47759 1.22534 1.12010 1.51537 1.22049 1.00236 0.80724 1.03887 1.21614 0.83191 1.01118 0.95445 1.21955 0.82811 1.00117 0.92714 0.91048 1.22723 0.97969 1.00112 0.94902 1.22771 0.94123 1.04295 0.94525 1.22645 0.97175 0.91576 0.91885 1.48511 1.20343 1.43051 1.22896 1.19773 0.87935 0.79175 0.79448 1.90662 1.56020 1.38286 1.58482 1.23316 0.96770 1.05198 1.01959 1.85512 1.20449 1.62265 1.23520 1.23192 1.00126 1.33871 1.12285 0.90011 1.26127 1.03731 0.94413 0.94836 1.70178 1.39574 1.31355 1.13559 0.84952 0.76217 0.78053 0.78755 1.19363 1.20162 1.18184 0.92247 0.91192 0.90625 0.88958 0.84989 0.91844 0.87544 0.91303 0.91442 0.91461 0.90265 0.89325 0.87512 0.89582 0.89212 0.90651 0.87506 0.87894 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 10.19 71.98 0.73 -0.31 16 2 C -0.13 -1.76 5.92 -10.79 -0.06 -1.83 16 3 H 0.09 1.72 7.67 -2.38 -0.02 1.70 16 4 C -0.13 -1.31 9.88 30.59 0.30 -1.01 16 5 C -0.20 -2.79 4.51 -11.54 -0.05 -2.84 16 6 H 0.14 1.40 7.19 -2.39 -0.02 1.38 16 7 C 0.54 11.96 6.89 87.66 0.60 12.56 16 8 O -0.58 -16.90 13.78 -3.03 -0.04 -16.94 16 9 N -0.61 -13.29 2.74 -846.77 -2.32 -15.61 16 10 C 0.07 1.11 10.13 127.77 1.29 2.40 16 11 C 0.11 3.13 5.00 86.38 0.43 3.57 16 12 C 0.13 3.31 3.16 45.34 0.14 3.45 16 13 H 0.07 1.88 8.04 -2.39 -0.02 1.86 16 14 C -0.12 -2.36 5.73 31.78 0.18 -2.18 16 15 C -0.12 -1.93 7.08 31.98 0.23 -1.70 16 16 C 0.09 1.93 6.74 86.85 0.59 2.51 16 17 N -0.61 -18.13 3.07 -788.03 -2.42 -20.55 16 18 C 0.55 21.51 7.69 87.66 0.67 22.18 16 19 O -0.56 -26.00 14.67 -3.05 -0.04 -26.04 16 20 C -0.12 -5.04 5.09 71.24 0.36 -4.68 16 21 S -0.14 -8.14 20.57 -56.49 -1.16 -9.30 16 22 C -0.55 -31.56 9.50 67.95 0.65 -30.91 16 23 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 24 C 0.01 0.79 5.49 84.86 0.47 1.26 16 25 N -0.91 -56.15 13.22 21.65 0.29 -55.86 16 26 Si 1.00 43.88 29.55 68.60 2.03 45.91 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 28 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 29 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.41 7.90 -2.38 -0.02 0.39 16 33 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.13 0.63 8.05 -2.38 -0.02 0.61 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.11 0.93 6.42 -2.39 -0.02 0.92 16 37 H 0.07 1.15 8.00 -2.39 -0.02 1.13 16 38 H 0.07 2.29 6.58 -2.39 -0.02 2.27 16 39 H 0.07 2.15 7.18 -2.39 -0.02 2.14 16 40 H 0.08 1.89 5.74 -2.39 -0.01 1.88 16 41 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.09 1.80 7.48 -2.38 -0.02 1.78 16 45 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.11 4.04 7.96 -2.40 -0.02 4.02 16 47 H 0.10 3.96 8.14 -2.40 -0.02 3.94 16 48 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 Total: -1.00 -79.69 399.50 3.81 -75.88 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.94 Total: 20.05 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 6.53 Total: 2.46 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -4.45 Total: -92.02 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -0.09 Total: -42.99 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.16 Total: -9.30 kcal Total: -79.69 3.81 -75.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508260264.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.945 kcal (2) G-P(sol) polarization free energy of solvation -79.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds