Wall clock time and date at job start Sat Apr 11 2020 06:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.87419 * 2 1 4 4 C 1.54324 * 109.87956 * 121.01039 * 2 1 3 5 5 C 1.55152 * 102.94324 * 97.38408 * 4 2 1 6 6 H 1.09003 * 111.00365 * 277.38730 * 5 4 2 7 7 N 1.46494 * 111.00848 * 153.57741 * 5 4 2 8 8 C 1.34773 * 120.00435 * 154.99758 * 7 5 4 9 9 O 1.21283 * 120.00019 * 0.02562 * 8 7 5 10 10 C 1.50697 * 120.00355 * 179.97438 * 8 7 5 11 11 C 1.53002 * 109.47431 * 179.97438 * 10 8 7 12 12 C 1.53781 * 113.61609 * 175.00037 * 11 10 8 13 13 C 1.53781 * 87.08070 * 139.98229 * 12 11 10 14 14 C 1.53786 * 87.17350 * 334.52830 * 13 12 11 15 15 C 1.54909 * 101.58290 * 35.49876 * 5 4 2 16 16 N 1.47017 * 110.01320 * 238.89886 * 2 1 3 17 17 C 1.34772 * 125.65259 * 59.49369 * 16 2 1 18 18 O 1.21283 * 119.99887 * 0.02562 * 17 16 2 19 19 C 1.50699 * 120.00237 * 180.02562 * 17 16 2 20 20 S 1.81007 * 109.47116 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99869 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00260 * 359.97438 * 21 20 19 23 23 C 1.38798 * 119.99826 * 180.02562 * 21 20 19 24 24 N 1.31630 * 120.00155 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99994 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47120 * 59.99657 * 25 23 21 27 27 H 1.48502 * 109.47128 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47258 * 299.99878 * 25 23 21 29 29 H 1.08994 * 109.47327 * 298.99125 * 1 2 3 30 30 H 1.09002 * 109.47075 * 58.98750 * 1 2 3 31 31 H 1.08998 * 109.46921 * 178.98837 * 1 2 3 32 32 H 1.08995 * 110.72226 * 339.01608 * 4 2 1 33 33 H 1.09005 * 110.71789 * 215.74603 * 4 2 1 34 34 H 0.97002 * 120.00028 * 334.99474 * 7 5 4 35 35 H 1.08997 * 109.47086 * 59.99898 * 10 8 7 36 36 H 1.09006 * 109.47329 * 300.00383 * 10 8 7 37 37 H 1.09003 * 112.90345 * 43.75090 * 11 10 8 38 38 H 1.08999 * 113.61181 * 25.43284 * 12 11 10 39 39 H 1.08998 * 113.61680 * 254.52836 * 12 11 10 40 40 H 1.09002 * 113.61445 * 89.11830 * 13 12 11 41 41 H 1.09002 * 113.61408 * 219.93560 * 13 12 11 42 42 H 1.08992 * 113.61675 * 140.02412 * 14 13 12 43 43 H 1.09000 * 113.60973 * 270.92699 * 14 13 12 44 44 H 1.08998 * 110.36987 * 81.83323 * 15 5 4 45 45 H 1.09004 * 110.36706 * 204.15975 * 15 5 4 46 46 H 1.09004 * 109.46890 * 299.99712 * 19 17 16 47 47 H 1.08997 * 109.47390 * 60.00435 * 19 17 16 48 48 H 0.97002 * 120.00347 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7477 1.2438 5 6 2.3557 -2.1672 0.6947 6 1 1.4505 -2.7737 0.6625 7 7 3.3978 -2.8263 1.4857 8 6 3.4629 -4.1718 1.5271 9 8 2.6589 -4.8371 0.9091 10 6 4.5352 -4.8498 2.3404 11 6 4.3855 -6.3675 2.2178 12 6 5.5077 -7.1555 2.9140 13 6 4.4213 -8.1405 3.3771 14 6 3.4219 -6.9783 3.2530 15 6 2.8619 -1.8473 -0.7339 16 7 2.0331 -0.7136 -1.1828 17 6 1.7796 -0.3852 -2.4651 18 8 1.0819 0.5738 -2.7190 19 6 2.3632 -1.2096 -3.5836 20 16 1.8452 -0.5200 -5.1750 21 6 2.6453 -1.6445 -6.2705 22 1 3.2375 -2.4558 -5.8739 23 6 2.5153 -1.4868 -7.6434 24 7 1.7939 -0.4976 -8.1269 25 14 3.3641 -2.6784 -8.8049 26 1 2.8661 -4.0546 -8.5530 27 1 3.0698 -2.2952 -10.2091 28 1 4.8306 -2.6331 -8.5759 29 1 -0.3634 0.4981 0.8988 30 1 -0.3633 0.5295 -0.8808 31 1 -0.3633 -1.0275 -0.0181 32 1 1.2908 -0.7884 2.0202 33 1 2.9641 -0.2791 1.6204 34 1 4.0411 -2.2943 1.9797 35 1 4.4368 -4.5586 3.3861 36 1 5.5158 -4.5500 1.9706 37 1 4.1922 -6.6936 1.1958 38 1 5.9809 -6.6114 3.7313 39 1 6.2277 -7.5931 2.2225 40 1 4.2378 -8.9513 2.6721 41 1 4.5578 -8.4917 4.3999 42 1 2.4594 -7.2729 2.8351 43 1 3.3261 -6.3859 4.1629 44 1 3.9135 -1.5619 -0.7088 45 1 2.7165 -2.7062 -1.3891 46 1 3.4511 -1.1930 -3.5177 47 1 2.0096 -2.2372 -3.5002 48 1 1.7028 -0.3876 -9.0864 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001511217710.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:48 Heat of formation + Delta-G solvation = -60.492887 kcal Electronic energy + Delta-G solvation = -26999.951701 eV Core-core repulsion = 23181.286051 eV Total energy + Delta-G solvation = -3818.665651 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.65869 -39.80047 -38.57531 -37.27522 -34.48762 -32.40808 -32.20454 -31.34862 -29.44907 -28.67922 -26.02197 -25.93652 -25.46424 -24.34961 -22.65917 -21.14518 -20.78310 -19.71734 -19.06361 -17.72906 -17.48327 -16.93252 -16.25902 -15.95097 -15.52796 -15.44033 -15.01013 -14.78491 -14.74036 -14.28865 -14.08159 -13.84463 -13.64769 -13.33962 -13.09321 -12.99372 -12.80537 -12.60298 -12.53942 -12.23485 -12.14641 -11.81143 -11.76568 -11.60170 -11.33534 -11.02191 -11.01652 -11.00896 -10.85572 -10.74667 -10.67115 -10.54010 -10.05377 -9.80813 -9.56955 -9.24972 -9.03735 -8.53371 -8.22160 -6.48103 -6.19382 -3.89965 2.35048 2.63024 3.00609 3.07720 3.25547 3.28262 3.31394 3.64023 4.09008 4.20227 4.22944 4.26639 4.33839 4.35239 4.51640 4.64404 4.67780 4.90950 4.95592 5.01744 5.06138 5.09974 5.15625 5.19276 5.31690 5.33810 5.38563 5.39942 5.52584 5.55608 5.56630 5.58421 5.61359 5.66257 5.72733 5.74916 5.91450 5.91988 6.01849 6.12005 6.17030 6.18689 6.28698 6.53516 7.14478 7.61513 7.65515 7.93137 8.37451 8.56582 9.25786 10.87996 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009922 B = 0.002556 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.468561 B =10951.152623 C =13393.454573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.139 3.861 3 H 0.078 0.922 4 C -0.133 4.133 5 C 0.133 3.867 6 H 0.108 0.892 7 N -0.724 5.724 8 C 0.513 3.487 9 O -0.530 6.530 10 C -0.131 4.131 11 C -0.096 4.096 12 C -0.139 4.139 13 C -0.143 4.143 14 C -0.135 4.135 15 C 0.092 3.908 16 N -0.621 5.621 17 C 0.552 3.448 18 O -0.512 6.512 19 C -0.148 4.148 20 S -0.059 6.059 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.402 0.598 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.179 -8.204 28.818 30.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.035 3.965 3 H 0.096 0.904 4 C -0.172 4.172 5 C 0.027 3.973 6 H 0.126 0.874 7 N -0.376 5.376 8 C 0.300 3.700 9 O -0.405 6.405 10 C -0.171 4.171 11 C -0.115 4.115 12 C -0.176 4.176 13 C -0.181 4.181 14 C -0.173 4.173 15 C -0.033 4.033 16 N -0.359 5.359 17 C 0.340 3.660 18 O -0.385 6.385 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.236 0.764 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.101 0.899 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.458 -7.148 27.724 29.146 hybrid contribution 1.772 -1.575 -0.221 2.381 sum 7.230 -8.723 27.503 29.745 Atomic orbital electron populations 1.22178 0.94493 1.02530 1.03160 1.21420 0.95036 0.96353 0.83700 0.90444 1.23012 1.02400 0.94203 0.97578 1.22077 0.91913 0.93461 0.89887 0.87409 1.45931 1.33716 1.06787 1.51193 1.20817 0.85909 0.81907 0.81397 1.90745 1.41496 1.64113 1.44179 1.21715 0.98311 0.96375 1.00730 1.22411 0.96861 0.91742 1.00450 1.22981 0.96484 0.97908 1.00227 1.22797 0.96880 0.96968 1.01439 1.22994 0.98178 0.97420 0.98672 1.22625 0.95125 0.90063 0.95515 1.48499 1.51911 1.30568 1.04951 1.19999 0.79999 0.84685 0.81274 1.90692 1.37268 1.28156 1.82412 1.23528 1.03683 1.02619 1.00004 1.85352 1.67218 1.40170 0.90529 1.22819 1.36445 1.15950 0.93101 0.91006 1.24986 0.95268 0.95978 0.97318 1.70008 1.37382 1.29278 1.13654 0.86227 0.79655 0.80583 0.79061 1.19906 1.20803 1.19947 0.91945 0.90454 0.92495 0.89249 0.90050 0.76367 0.88833 0.88590 0.88048 0.90127 0.91348 0.90154 0.91582 0.91177 0.90458 0.91203 0.89875 0.89414 0.89281 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.06 37.16 0.34 -1.65 16 2 C 0.14 1.61 3.49 -66.96 -0.23 1.37 16 3 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.13 -1.00 6.14 -24.90 -0.15 -1.15 16 5 C 0.13 1.22 3.42 -65.79 -0.23 0.99 16 6 H 0.11 1.22 7.54 -51.93 -0.39 0.82 16 7 N -0.72 -5.00 5.20 -51.74 -0.27 -5.27 16 8 C 0.51 4.57 7.83 -10.99 -0.09 4.49 16 9 O -0.53 -7.16 15.40 5.56 0.09 -7.08 16 10 C -0.13 -0.75 5.54 -27.88 -0.15 -0.90 16 11 C -0.10 -0.69 3.16 -89.67 -0.28 -0.97 16 12 C -0.14 -0.78 7.64 -25.92 -0.20 -0.98 16 13 C -0.14 -0.88 8.07 -25.92 -0.21 -1.08 16 14 C -0.14 -0.96 7.65 -25.77 -0.20 -1.16 16 15 C 0.09 1.08 6.39 -2.53 -0.02 1.06 16 16 N -0.62 -9.09 3.08 -163.02 -0.50 -9.59 16 17 C 0.55 10.84 7.65 -10.99 -0.08 10.76 16 18 O -0.51 -11.79 14.78 5.56 0.08 -11.71 16 19 C -0.15 -3.15 5.16 36.01 0.19 -2.97 16 20 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 21 C -0.53 -15.55 9.50 30.94 0.29 -15.25 16 22 H 0.07 1.98 7.80 -52.49 -0.41 1.58 16 23 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 24 N -0.87 -26.50 13.22 55.49 0.73 -25.76 16 25 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.19 6.78 -51.93 -0.35 0.84 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.56 7.83 -51.93 -0.41 0.15 16 33 H 0.08 0.45 8.00 -51.93 -0.42 0.03 16 34 H 0.40 1.51 8.57 -40.82 -0.35 1.16 16 35 H 0.09 0.35 7.85 -51.93 -0.41 -0.06 16 36 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.10 0.95 7.67 -51.93 -0.40 0.56 16 38 H 0.08 0.36 8.10 -51.93 -0.42 -0.06 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.47 7.90 -51.93 -0.41 0.06 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.08 1.11 7.48 -51.93 -0.39 0.72 16 46 H 0.09 1.75 8.14 -51.91 -0.42 1.32 16 47 H 0.09 1.82 7.85 -51.92 -0.41 1.41 16 48 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 402.41 15.07 6.06 6.06 Total: -1.00 -36.44 402.41 -10.28 -46.72 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -8.12 Total: -0.87 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -1.12 Total: -5.39 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: -0.04 Total: -40.63 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.17 Total: -18.78 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.44 -10.28 -46.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001511217710.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.774 kcal (2) G-P(sol) polarization free energy of solvation -36.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds