Wall clock time and date at job start Sat Apr 11 2020 06:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.87419 * 2 1 4 4 C 1.54324 * 109.87956 * 121.01039 * 2 1 3 5 5 C 1.55152 * 102.94324 * 97.38408 * 4 2 1 6 6 H 1.09003 * 111.00365 * 277.38730 * 5 4 2 7 7 N 1.46494 * 111.00848 * 153.57741 * 5 4 2 8 8 C 1.34773 * 120.00435 * 154.99758 * 7 5 4 9 9 O 1.21283 * 120.00019 * 0.02562 * 8 7 5 10 10 C 1.50697 * 120.00355 * 179.97438 * 8 7 5 11 11 C 1.53002 * 109.47431 * 179.97438 * 10 8 7 12 12 C 1.53781 * 113.61609 * 175.00037 * 11 10 8 13 13 C 1.53781 * 87.08070 * 139.98229 * 12 11 10 14 14 C 1.53786 * 87.17350 * 334.52830 * 13 12 11 15 15 C 1.54909 * 101.58290 * 35.49876 * 5 4 2 16 16 N 1.47017 * 110.01320 * 238.89886 * 2 1 3 17 17 C 1.34772 * 125.65259 * 59.49369 * 16 2 1 18 18 O 1.21283 * 119.99887 * 0.02562 * 17 16 2 19 19 C 1.50699 * 120.00237 * 180.02562 * 17 16 2 20 20 S 1.81007 * 109.47116 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99869 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00260 * 359.97438 * 21 20 19 23 23 C 1.38798 * 119.99826 * 180.02562 * 21 20 19 24 24 N 1.31630 * 120.00155 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99994 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47120 * 59.99657 * 25 23 21 27 27 H 1.48502 * 109.47128 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47258 * 299.99878 * 25 23 21 29 29 H 1.08994 * 109.47327 * 298.99125 * 1 2 3 30 30 H 1.09002 * 109.47075 * 58.98750 * 1 2 3 31 31 H 1.08998 * 109.46921 * 178.98837 * 1 2 3 32 32 H 1.08995 * 110.72226 * 339.01608 * 4 2 1 33 33 H 1.09005 * 110.71789 * 215.74603 * 4 2 1 34 34 H 0.97002 * 120.00028 * 334.99474 * 7 5 4 35 35 H 1.08997 * 109.47086 * 59.99898 * 10 8 7 36 36 H 1.09006 * 109.47329 * 300.00383 * 10 8 7 37 37 H 1.09003 * 112.90345 * 43.75090 * 11 10 8 38 38 H 1.08999 * 113.61181 * 25.43284 * 12 11 10 39 39 H 1.08998 * 113.61680 * 254.52836 * 12 11 10 40 40 H 1.09002 * 113.61445 * 89.11830 * 13 12 11 41 41 H 1.09002 * 113.61408 * 219.93560 * 13 12 11 42 42 H 1.08992 * 113.61675 * 140.02412 * 14 13 12 43 43 H 1.09000 * 113.60973 * 270.92699 * 14 13 12 44 44 H 1.08998 * 110.36987 * 81.83323 * 15 5 4 45 45 H 1.09004 * 110.36706 * 204.15975 * 15 5 4 46 46 H 1.09004 * 109.46890 * 299.99712 * 19 17 16 47 47 H 1.08997 * 109.47390 * 60.00435 * 19 17 16 48 48 H 0.97002 * 120.00347 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7477 1.2438 5 6 2.3557 -2.1672 0.6947 6 1 1.4505 -2.7737 0.6625 7 7 3.3978 -2.8263 1.4857 8 6 3.4629 -4.1718 1.5271 9 8 2.6589 -4.8371 0.9091 10 6 4.5352 -4.8498 2.3404 11 6 4.3855 -6.3675 2.2178 12 6 5.5077 -7.1555 2.9140 13 6 4.4213 -8.1405 3.3771 14 6 3.4219 -6.9783 3.2530 15 6 2.8619 -1.8473 -0.7339 16 7 2.0331 -0.7136 -1.1828 17 6 1.7796 -0.3852 -2.4651 18 8 1.0819 0.5738 -2.7190 19 6 2.3632 -1.2096 -3.5836 20 16 1.8452 -0.5200 -5.1750 21 6 2.6453 -1.6445 -6.2705 22 1 3.2375 -2.4558 -5.8739 23 6 2.5153 -1.4868 -7.6434 24 7 1.7939 -0.4976 -8.1269 25 14 3.3641 -2.6784 -8.8049 26 1 2.8661 -4.0546 -8.5530 27 1 3.0698 -2.2952 -10.2091 28 1 4.8306 -2.6331 -8.5759 29 1 -0.3634 0.4981 0.8988 30 1 -0.3633 0.5295 -0.8808 31 1 -0.3633 -1.0275 -0.0181 32 1 1.2908 -0.7884 2.0202 33 1 2.9641 -0.2791 1.6204 34 1 4.0411 -2.2943 1.9797 35 1 4.4368 -4.5586 3.3861 36 1 5.5158 -4.5500 1.9706 37 1 4.1922 -6.6936 1.1958 38 1 5.9809 -6.6114 3.7313 39 1 6.2277 -7.5931 2.2225 40 1 4.2378 -8.9513 2.6721 41 1 4.5578 -8.4917 4.3999 42 1 2.4594 -7.2729 2.8351 43 1 3.3261 -6.3859 4.1629 44 1 3.9135 -1.5619 -0.7088 45 1 2.7165 -2.7062 -1.3891 46 1 3.4511 -1.1930 -3.5177 47 1 2.0096 -2.2372 -3.5002 48 1 1.7028 -0.3876 -9.0864 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001511217710.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:47 Heat of formation + Delta-G solvation = -85.117769 kcal Electronic energy + Delta-G solvation = -27001.019516 eV Core-core repulsion = 23181.286051 eV Total energy + Delta-G solvation = -3819.733466 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.58371 -40.74425 -39.30787 -38.43981 -35.36247 -34.62400 -33.41325 -32.00577 -30.44286 -30.01855 -27.70361 -26.93511 -26.42176 -25.04371 -23.62641 -22.03148 -21.46859 -20.44499 -20.20651 -19.60474 -18.33060 -18.06008 -17.30733 -16.92028 -16.75627 -16.62622 -16.40772 -16.03579 -15.81515 -15.51567 -15.07562 -14.74631 -14.62152 -14.49290 -14.36638 -14.20965 -13.82087 -13.68037 -13.24953 -13.22378 -13.21446 -13.10276 -12.89921 -12.75999 -12.64121 -12.47080 -12.27427 -12.19795 -11.78429 -11.71853 -11.48967 -11.21861 -11.16553 -11.03239 -10.97712 -10.75720 -10.35219 -10.18689 -9.75742 -8.72138 -8.38042 -6.17209 1.18581 1.40070 1.41243 1.49878 1.51988 1.68148 1.88781 2.23730 2.30387 2.95619 3.18327 3.38544 3.47067 3.67224 3.77839 3.79934 3.85531 3.94903 4.03120 4.09158 4.10650 4.15505 4.22083 4.34352 4.37998 4.51373 4.55195 4.61691 4.65716 4.74692 4.78881 4.87862 4.90778 4.93325 4.97768 5.04609 5.07696 5.12296 5.21013 5.26563 5.37169 5.42307 5.43320 5.50208 5.68035 6.15690 6.29673 6.60240 7.02551 7.06891 7.32943 8.71042 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009922 B = 0.002556 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.468561 B =10951.152623 C =13393.454573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.128 3.872 3 H 0.079 0.921 4 C -0.111 4.111 5 C 0.141 3.859 6 H 0.085 0.915 7 N -0.705 5.705 8 C 0.509 3.491 9 O -0.584 6.584 10 C -0.123 4.123 11 C -0.104 4.104 12 C -0.127 4.127 13 C -0.146 4.146 14 C -0.139 4.139 15 C 0.085 3.915 16 N -0.612 5.612 17 C 0.549 3.451 18 O -0.555 6.555 19 C -0.123 4.123 20 S -0.142 6.142 21 C -0.550 4.550 22 H 0.079 0.921 23 C 0.015 3.985 24 N -0.909 5.909 25 Si 0.999 3.001 26 H -0.264 1.264 27 H -0.275 1.275 28 H -0.261 1.261 29 H 0.096 0.904 30 H 0.035 0.965 31 H 0.051 0.949 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.423 0.577 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.068 0.932 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.043 0.957 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.062 0.938 46 H 0.103 0.897 47 H 0.095 0.905 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.859 -8.936 31.974 34.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 H 0.097 0.903 4 C -0.149 4.149 5 C 0.034 3.966 6 H 0.103 0.897 7 N -0.358 5.358 8 C 0.297 3.703 9 O -0.464 6.464 10 C -0.162 4.162 11 C -0.123 4.123 12 C -0.164 4.164 13 C -0.183 4.183 14 C -0.176 4.176 15 C -0.039 4.039 16 N -0.347 5.347 17 C 0.337 3.663 18 O -0.433 6.433 19 C -0.274 4.274 20 S 0.085 5.915 21 C -0.698 4.698 22 H 0.097 0.903 23 C -0.190 4.190 24 N -0.545 5.545 25 Si 0.820 3.180 26 H -0.189 1.189 27 H -0.200 1.200 28 H -0.185 1.185 29 H 0.114 0.886 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.261 0.739 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.062 0.938 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.080 0.920 46 H 0.122 0.878 47 H 0.113 0.887 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.184 -7.874 30.964 32.981 hybrid contribution 0.907 -1.368 -1.080 1.965 sum 9.091 -9.242 29.883 32.574 Atomic orbital electron populations 1.22148 0.95049 1.01974 1.02878 1.21774 0.94780 0.96929 0.83947 0.90266 1.22984 1.04488 0.91827 0.95643 1.21789 0.91595 0.94425 0.88753 0.89699 1.45741 1.33366 1.06386 1.50348 1.21486 0.85788 0.82199 0.80804 1.90740 1.43730 1.65355 1.46541 1.21759 0.97935 0.94591 1.01905 1.22361 0.97845 0.93316 0.98808 1.22959 0.95752 0.97217 1.00467 1.22813 0.96916 0.96655 1.01939 1.23045 0.97103 0.98294 0.99200 1.22874 0.95888 0.88285 0.96888 1.48400 1.51062 1.31098 1.04147 1.19637 0.79888 0.84080 0.82674 1.90674 1.39302 1.29924 1.83404 1.23327 1.04505 1.02590 0.96980 1.85471 1.68549 1.42123 0.95347 1.23139 1.36688 1.16141 0.93798 0.90314 1.26134 0.95787 0.97903 0.99188 1.70168 1.38841 1.31307 1.14229 0.85004 0.78786 0.77856 0.76352 1.18895 1.20009 1.18501 0.88553 0.94529 0.92998 0.86874 0.86631 0.73857 0.85725 0.86234 0.91339 0.87865 0.91466 0.91205 0.90352 0.93774 0.88786 0.89002 0.91973 0.87848 0.88671 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 9.06 71.98 0.65 -3.15 16 2 C 0.13 2.74 3.49 45.34 0.16 2.90 16 3 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 4 C -0.11 -1.21 6.14 31.78 0.20 -1.01 16 5 C 0.14 2.25 3.42 46.38 0.16 2.41 16 6 H 0.08 1.83 7.54 -2.39 -0.02 1.82 16 7 N -0.70 -7.33 5.20 -435.99 -2.27 -9.59 16 8 C 0.51 8.04 7.83 87.66 0.69 8.72 16 9 O -0.58 -15.89 15.40 -3.04 -0.05 -15.94 16 10 C -0.12 -0.99 5.54 29.85 0.17 -0.83 16 11 C -0.10 -1.37 3.16 -10.18 -0.03 -1.40 16 12 C -0.13 -1.12 7.64 31.12 0.24 -0.88 16 13 C -0.15 -1.60 8.07 31.12 0.25 -1.35 16 14 C -0.14 -1.84 7.65 31.21 0.24 -1.60 16 15 C 0.08 1.87 6.39 86.85 0.55 2.43 16 16 N -0.61 -17.58 3.08 -788.05 -2.43 -20.01 16 17 C 0.55 22.19 7.65 87.66 0.67 22.86 16 18 O -0.56 -26.84 14.78 -3.04 -0.04 -26.89 16 19 C -0.12 -5.38 5.16 71.24 0.37 -5.01 16 20 S -0.14 -8.24 20.57 -56.49 -1.16 -9.40 16 21 C -0.55 -32.65 9.50 67.95 0.65 -32.00 16 22 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 23 C 0.01 0.87 5.49 84.86 0.47 1.34 16 24 N -0.91 -56.95 13.22 21.65 0.29 -56.66 16 25 Si 1.00 44.79 29.55 68.60 2.03 46.82 16 26 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 27 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 28 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 29 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.04 1.16 6.78 -2.39 -0.02 1.14 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.11 0.83 7.83 -2.39 -0.02 0.82 16 33 H 0.12 0.58 8.00 -2.38 -0.02 0.56 16 34 H 0.42 0.99 8.57 -92.71 -0.79 0.19 16 35 H 0.12 0.30 7.85 -2.39 -0.02 0.28 16 36 H 0.12 0.46 8.14 -2.38 -0.02 0.44 16 37 H 0.07 1.35 7.67 -2.39 -0.02 1.33 16 38 H 0.10 0.48 8.10 -2.39 -0.02 0.46 16 39 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.08 0.66 8.14 -2.39 -0.02 0.65 16 42 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.09 0.91 7.90 -2.39 -0.02 0.89 16 44 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.06 1.66 7.48 -2.38 -0.02 1.64 16 46 H 0.10 4.15 8.14 -2.39 -0.02 4.13 16 47 H 0.10 4.00 7.85 -2.40 -0.02 3.99 16 48 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -86.26 402.41 1.93 -84.33 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.15 Total: 13.92 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 5.42 Total: -6.58 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -4.41 Total: -86.26 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -0.09 Total: -42.83 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.16 Total: -9.40 kcal Total: -86.26 1.93 -84.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001511217710.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.789 kcal (2) G-P(sol) polarization free energy of solvation -86.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds