Wall clock time and date at job start Sat Apr 11 2020 06:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.87583 * 2 1 4 4 C 1.54323 * 109.88106 * 238.98165 * 2 1 3 5 5 C 1.55147 * 102.94784 * 262.62439 * 4 2 1 6 6 H 1.08998 * 111.00981 * 82.60487 * 5 4 2 7 7 N 1.46503 * 111.00638 * 206.42930 * 5 4 2 8 8 C 1.34776 * 119.99756 * 205.00083 * 7 5 4 9 9 O 1.21286 * 120.00310 * 359.97438 * 8 7 5 10 10 C 1.50696 * 120.00066 * 179.97438 * 8 7 5 11 11 C 1.53004 * 109.47498 * 179.97438 * 10 8 7 12 12 C 1.53782 * 113.61353 * 272.50087 * 11 10 8 13 13 C 1.53788 * 87.07866 * 220.01409 * 12 11 10 14 14 C 1.53774 * 113.61777 * 174.99781 * 11 10 8 15 15 C 1.54914 * 101.57928 * 324.49777 * 5 4 2 16 16 N 1.47027 * 110.00938 * 121.10100 * 2 1 3 17 17 C 1.34773 * 125.64711 * 300.52153 * 16 2 1 18 18 O 1.21282 * 120.00056 * 0.02562 * 17 16 2 19 19 C 1.50703 * 119.99998 * 179.97438 * 17 16 2 20 20 S 1.80999 * 109.47203 * 180.02562 * 19 17 16 21 21 C 1.76192 * 100.00090 * 180.02562 * 20 19 17 22 22 H 1.08011 * 119.99968 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00507 * 179.97438 * 21 20 19 24 24 N 1.31632 * 119.99331 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00416 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47484 * 89.99852 * 25 23 21 27 27 H 1.48506 * 109.47147 * 210.00185 * 25 23 21 28 28 H 1.48506 * 109.46951 * 329.99880 * 25 23 21 29 29 H 1.08994 * 109.47215 * 180.70406 * 1 2 3 30 30 H 1.09001 * 109.46642 * 300.69909 * 1 2 3 31 31 H 1.09002 * 109.46991 * 60.69928 * 1 2 3 32 32 H 1.09004 * 110.71745 * 20.99118 * 4 2 1 33 33 H 1.09003 * 110.72163 * 144.07807 * 4 2 1 34 34 H 0.96996 * 119.99884 * 24.99006 * 7 5 4 35 35 H 1.08998 * 109.46930 * 299.99789 * 10 8 7 36 36 H 1.09002 * 109.47168 * 59.99830 * 10 8 7 37 37 H 1.09002 * 112.84228 * 43.80077 * 11 10 8 38 38 H 1.08994 * 113.61617 * 334.56328 * 12 11 10 39 39 H 1.08998 * 113.61566 * 105.47336 * 12 11 10 40 40 H 1.08999 * 113.61687 * 270.88636 * 13 12 11 41 41 H 1.08997 * 113.61244 * 139.97534 * 13 12 11 42 42 H 1.09002 * 113.62007 * 254.53434 * 14 11 10 43 43 H 1.09008 * 113.61375 * 25.43352 * 14 11 10 44 44 H 1.09000 * 110.36623 * 155.84512 * 15 5 4 45 45 H 1.09001 * 110.36874 * 278.05773 * 15 5 4 46 46 H 1.08992 * 109.47116 * 300.00626 * 19 17 16 47 47 H 1.09004 * 109.46801 * 60.00288 * 19 17 16 48 48 H 0.97001 * 119.99151 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 6 2.3556 -2.1674 -0.6946 6 1 1.4504 -2.7737 -0.6622 7 7 3.3979 -2.8265 -1.4855 8 6 3.4628 -4.1720 -1.5268 9 8 2.6587 -4.8373 -0.9089 10 6 4.5346 -4.8501 -2.3408 11 6 4.3856 -6.3678 -2.2170 12 6 5.1316 -6.9637 -1.0114 13 6 5.5235 -8.1321 -1.9313 14 6 5.3582 -7.1571 -3.1090 15 6 2.8618 -1.8473 0.7341 16 7 2.0331 -0.7136 1.1829 17 6 1.7793 -0.3853 2.4652 18 8 1.0805 0.5729 2.7189 19 6 2.3627 -1.2097 3.5838 20 16 1.8431 -0.5212 5.1750 21 6 2.6445 -1.6444 6.2707 22 1 3.2376 -2.4554 5.8741 23 6 2.5139 -1.4873 7.6435 24 7 1.7907 -0.4993 8.1269 25 14 3.3630 -2.6785 8.8051 26 1 4.7216 -2.1728 9.1268 27 1 2.5711 -2.7999 10.0555 28 1 3.4712 -4.0100 8.1565 29 1 -0.3633 -1.0275 0.0126 30 1 -0.3632 0.5247 0.8837 31 1 -0.3633 0.5029 -0.8962 32 1 1.2908 -0.7885 -2.0201 33 1 2.9624 -0.2775 -1.6222 34 1 4.0411 -2.2945 -1.9795 35 1 4.4353 -4.5590 -3.3865 36 1 5.5154 -4.5503 -1.9717 37 1 3.3506 -6.6995 -2.2992 38 1 5.9798 -6.3633 -0.6825 39 1 4.4746 -7.2548 -0.1918 40 1 4.7998 -8.9471 -1.9344 41 1 6.5483 -8.4750 -1.7890 42 1 4.8843 -7.6042 -3.9829 43 1 6.2685 -6.6096 -3.3537 44 1 2.7164 -2.7062 1.3893 45 1 3.9140 -1.5639 0.7092 46 1 2.0095 -2.2374 3.5001 47 1 3.4506 -1.1929 3.5181 48 1 1.6991 -0.3897 9.0863 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001511217711.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:50 Heat of formation + Delta-G solvation = -60.490779 kcal Electronic energy + Delta-G solvation = -27073.822243 eV Core-core repulsion = 23255.156684 eV Total energy + Delta-G solvation = -3818.665559 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.65795 -39.80003 -38.57254 -37.27424 -34.48670 -32.40940 -32.20475 -31.34441 -29.44546 -28.67955 -26.01669 -25.91195 -25.46620 -24.34188 -22.65810 -21.14563 -20.77898 -19.69208 -19.06788 -17.73271 -17.47901 -16.93244 -16.29523 -15.89723 -15.61181 -15.19855 -15.15233 -14.78406 -14.71629 -14.29858 -14.12627 -13.84371 -13.62604 -13.28208 -13.11480 -13.00904 -12.77180 -12.60140 -12.53618 -12.23543 -12.12144 -11.82038 -11.76870 -11.59267 -11.33329 -11.04317 -11.00294 -10.98656 -10.85329 -10.73992 -10.64793 -10.52120 -10.04914 -9.80029 -9.56994 -9.24902 -9.04593 -8.53382 -8.21817 -6.48192 -6.19727 -3.90110 2.35037 2.63127 3.00615 3.07662 3.24090 3.28384 3.32746 3.64077 4.08245 4.21772 4.24562 4.27952 4.33371 4.36944 4.54894 4.63440 4.68039 4.90810 4.97364 5.02675 5.06824 5.11204 5.15487 5.17331 5.31644 5.37227 5.38748 5.42350 5.53007 5.56585 5.57335 5.59275 5.61403 5.66364 5.73464 5.80466 5.91693 5.94151 6.01797 6.12236 6.17073 6.20215 6.28722 6.53580 7.14553 7.61720 7.65527 7.93174 8.37534 8.56555 9.25697 10.87748 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009002 B = 0.002759 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.733104 B =10144.611129 C =12982.471159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.139 3.861 3 H 0.078 0.922 4 C -0.134 4.134 5 C 0.133 3.867 6 H 0.108 0.892 7 N -0.724 5.724 8 C 0.513 3.487 9 O -0.530 6.530 10 C -0.131 4.131 11 C -0.096 4.096 12 C -0.136 4.136 13 C -0.144 4.144 14 C -0.138 4.138 15 C 0.092 3.908 16 N -0.621 5.621 17 C 0.552 3.448 18 O -0.512 6.512 19 C -0.148 4.148 20 S -0.060 6.060 21 C -0.534 4.534 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.402 0.598 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.723 -8.199 -28.133 30.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.035 3.965 3 H 0.096 0.904 4 C -0.172 4.172 5 C 0.027 3.973 6 H 0.126 0.874 7 N -0.376 5.376 8 C 0.300 3.700 9 O -0.405 6.405 10 C -0.171 4.171 11 C -0.114 4.114 12 C -0.173 4.173 13 C -0.181 4.181 14 C -0.176 4.176 15 C -0.033 4.033 16 N -0.359 5.359 17 C 0.340 3.660 18 O -0.385 6.385 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.682 4.682 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.236 0.764 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.998 -7.150 -27.041 28.607 hybrid contribution 1.779 -1.560 0.237 2.378 sum 7.777 -8.710 -26.805 29.238 Atomic orbital electron populations 1.22180 0.94491 1.02513 1.03183 1.21424 0.95038 0.96350 0.83699 0.90444 1.23008 1.02425 0.94201 0.97568 1.22075 0.91910 0.93442 0.89888 0.87405 1.45933 1.33718 1.06787 1.51192 1.20820 0.85827 0.81907 0.81480 1.90746 1.41540 1.64115 1.44132 1.21721 0.98304 0.96395 1.00723 1.22355 1.00146 0.91756 0.97177 1.22957 0.99923 0.97385 0.97053 1.22799 1.01632 0.96978 0.96685 1.22984 0.99439 0.97994 0.97138 1.22617 0.95124 0.90058 0.95521 1.48497 1.51898 1.30572 1.04951 1.20000 0.80007 0.84674 0.81275 1.90691 1.37223 1.28197 1.82415 1.23526 1.03680 1.02620 0.99997 1.85353 1.67061 1.40346 0.90550 1.22859 1.36295 1.15983 0.93093 0.90958 1.24990 0.95263 0.95999 0.97332 1.70023 1.37327 1.29403 1.13566 0.86169 0.79190 0.80561 0.79602 1.20279 1.20736 1.19655 0.92498 0.90444 0.91943 0.89265 0.90046 0.76366 0.88749 0.88696 0.88196 0.90301 0.91065 0.90197 0.91510 0.91485 0.90111 0.89890 0.91218 0.89282 0.89418 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.06 37.16 0.34 -1.65 16 2 C 0.14 1.61 3.49 -66.95 -0.23 1.37 16 3 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.13 -1.00 6.14 -24.90 -0.15 -1.15 16 5 C 0.13 1.22 3.42 -65.78 -0.23 0.99 16 6 H 0.11 1.21 7.54 -51.93 -0.39 0.82 16 7 N -0.72 -5.01 5.20 -51.73 -0.27 -5.28 16 8 C 0.51 4.58 7.83 -10.99 -0.09 4.49 16 9 O -0.53 -7.17 15.40 5.55 0.09 -7.08 16 10 C -0.13 -0.75 5.54 -27.88 -0.15 -0.90 16 11 C -0.10 -0.69 3.15 -89.81 -0.28 -0.97 16 12 C -0.14 -1.07 7.63 -25.91 -0.20 -1.27 16 13 C -0.14 -0.93 8.08 -25.91 -0.21 -1.14 16 14 C -0.14 -0.77 7.64 -25.92 -0.20 -0.97 16 15 C 0.09 1.08 6.39 -2.53 -0.02 1.07 16 16 N -0.62 -9.09 3.08 -163.01 -0.50 -9.59 16 17 C 0.55 10.85 7.65 -10.99 -0.08 10.76 16 18 O -0.51 -11.79 14.77 5.56 0.08 -11.71 16 19 C -0.15 -3.15 5.16 36.01 0.19 -2.96 16 20 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 21 C -0.53 -15.52 9.50 30.94 0.29 -15.23 16 22 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 23 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.50 13.22 55.49 0.73 -25.76 16 25 Si 0.92 21.78 29.55 -169.99 -5.02 16.75 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.19 6.76 -51.93 -0.35 0.84 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.55 7.83 -51.93 -0.41 0.15 16 33 H 0.08 0.45 8.01 -51.93 -0.42 0.03 16 34 H 0.40 1.51 8.57 -40.82 -0.35 1.16 16 35 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.41 7.84 -51.93 -0.41 0.00 16 37 H 0.10 0.90 7.67 -51.93 -0.40 0.50 16 38 H 0.08 0.57 7.89 -51.93 -0.41 0.16 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.37 8.10 -51.92 -0.42 -0.05 16 44 H 0.08 1.11 7.48 -51.93 -0.39 0.72 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.09 1.82 7.85 -51.92 -0.41 1.41 16 47 H 0.09 1.75 8.14 -51.91 -0.42 1.32 16 48 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 402.37 15.07 6.06 6.06 Total: -1.00 -36.46 402.37 -10.28 -46.74 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -8.12 Total: -0.73 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -1.12 Total: -5.53 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: -0.04 Total: -40.63 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.17 Total: -18.79 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.46 -10.28 -46.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001511217711.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.751 kcal (2) G-P(sol) polarization free energy of solvation -36.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds