Wall clock time and date at job start Sat Apr 11 2020 06:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.87583 * 2 1 4 4 C 1.54323 * 109.88106 * 238.98165 * 2 1 3 5 5 C 1.55147 * 102.94784 * 262.62439 * 4 2 1 6 6 H 1.08998 * 111.00981 * 82.60487 * 5 4 2 7 7 N 1.46503 * 111.00638 * 206.42930 * 5 4 2 8 8 C 1.34776 * 119.99756 * 205.00083 * 7 5 4 9 9 O 1.21286 * 120.00310 * 359.97438 * 8 7 5 10 10 C 1.50696 * 120.00066 * 179.97438 * 8 7 5 11 11 C 1.53004 * 109.47498 * 179.97438 * 10 8 7 12 12 C 1.53782 * 113.61353 * 272.50087 * 11 10 8 13 13 C 1.53788 * 87.07866 * 220.01409 * 12 11 10 14 14 C 1.53774 * 113.61777 * 174.99781 * 11 10 8 15 15 C 1.54914 * 101.57928 * 324.49777 * 5 4 2 16 16 N 1.47027 * 110.00938 * 121.10100 * 2 1 3 17 17 C 1.34773 * 125.64711 * 300.52153 * 16 2 1 18 18 O 1.21282 * 120.00056 * 0.02562 * 17 16 2 19 19 C 1.50703 * 119.99998 * 179.97438 * 17 16 2 20 20 S 1.80999 * 109.47203 * 180.02562 * 19 17 16 21 21 C 1.76192 * 100.00090 * 180.02562 * 20 19 17 22 22 H 1.08011 * 119.99968 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00507 * 179.97438 * 21 20 19 24 24 N 1.31632 * 119.99331 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00416 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47484 * 89.99852 * 25 23 21 27 27 H 1.48506 * 109.47147 * 210.00185 * 25 23 21 28 28 H 1.48506 * 109.46951 * 329.99880 * 25 23 21 29 29 H 1.08994 * 109.47215 * 180.70406 * 1 2 3 30 30 H 1.09001 * 109.46642 * 300.69909 * 1 2 3 31 31 H 1.09002 * 109.46991 * 60.69928 * 1 2 3 32 32 H 1.09004 * 110.71745 * 20.99118 * 4 2 1 33 33 H 1.09003 * 110.72163 * 144.07807 * 4 2 1 34 34 H 0.96996 * 119.99884 * 24.99006 * 7 5 4 35 35 H 1.08998 * 109.46930 * 299.99789 * 10 8 7 36 36 H 1.09002 * 109.47168 * 59.99830 * 10 8 7 37 37 H 1.09002 * 112.84228 * 43.80077 * 11 10 8 38 38 H 1.08994 * 113.61617 * 334.56328 * 12 11 10 39 39 H 1.08998 * 113.61566 * 105.47336 * 12 11 10 40 40 H 1.08999 * 113.61687 * 270.88636 * 13 12 11 41 41 H 1.08997 * 113.61244 * 139.97534 * 13 12 11 42 42 H 1.09002 * 113.62007 * 254.53434 * 14 11 10 43 43 H 1.09008 * 113.61375 * 25.43352 * 14 11 10 44 44 H 1.09000 * 110.36623 * 155.84512 * 15 5 4 45 45 H 1.09001 * 110.36874 * 278.05773 * 15 5 4 46 46 H 1.08992 * 109.47116 * 300.00626 * 19 17 16 47 47 H 1.09004 * 109.46801 * 60.00288 * 19 17 16 48 48 H 0.97001 * 119.99151 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 6 2.3556 -2.1674 -0.6946 6 1 1.4504 -2.7737 -0.6622 7 7 3.3979 -2.8265 -1.4855 8 6 3.4628 -4.1720 -1.5268 9 8 2.6587 -4.8373 -0.9089 10 6 4.5346 -4.8501 -2.3408 11 6 4.3856 -6.3678 -2.2170 12 6 5.1316 -6.9637 -1.0114 13 6 5.5235 -8.1321 -1.9313 14 6 5.3582 -7.1571 -3.1090 15 6 2.8618 -1.8473 0.7341 16 7 2.0331 -0.7136 1.1829 17 6 1.7793 -0.3853 2.4652 18 8 1.0805 0.5729 2.7189 19 6 2.3627 -1.2097 3.5838 20 16 1.8431 -0.5212 5.1750 21 6 2.6445 -1.6444 6.2707 22 1 3.2376 -2.4554 5.8741 23 6 2.5139 -1.4873 7.6435 24 7 1.7907 -0.4993 8.1269 25 14 3.3630 -2.6785 8.8051 26 1 4.7216 -2.1728 9.1268 27 1 2.5711 -2.7999 10.0555 28 1 3.4712 -4.0100 8.1565 29 1 -0.3633 -1.0275 0.0126 30 1 -0.3632 0.5247 0.8837 31 1 -0.3633 0.5029 -0.8962 32 1 1.2908 -0.7885 -2.0201 33 1 2.9624 -0.2775 -1.6222 34 1 4.0411 -2.2945 -1.9795 35 1 4.4353 -4.5590 -3.3865 36 1 5.5154 -4.5503 -1.9717 37 1 3.3506 -6.6995 -2.2992 38 1 5.9798 -6.3633 -0.6825 39 1 4.4746 -7.2548 -0.1918 40 1 4.7998 -8.9471 -1.9344 41 1 6.5483 -8.4750 -1.7890 42 1 4.8843 -7.6042 -3.9829 43 1 6.2685 -6.6096 -3.3537 44 1 2.7164 -2.7062 1.3893 45 1 3.9140 -1.5639 0.7092 46 1 2.0095 -2.2374 3.5001 47 1 3.4506 -1.1929 3.5181 48 1 1.6991 -0.3897 9.0863 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001511217711.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:49 Heat of formation + Delta-G solvation = -85.142183 kcal Electronic energy + Delta-G solvation = -27074.891208 eV Core-core repulsion = 23255.156684 eV Total energy + Delta-G solvation = -3819.734524 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.58404 -40.74939 -39.32093 -38.44245 -35.36205 -34.62650 -33.41409 -32.00708 -30.44362 -30.01982 -27.70723 -26.93531 -26.42566 -25.04856 -23.63009 -22.03372 -21.46791 -20.44161 -20.20983 -19.60939 -18.33035 -18.06347 -17.30875 -16.92466 -16.77946 -16.67033 -16.31571 -16.02317 -15.84157 -15.50601 -15.08804 -14.79713 -14.59835 -14.54484 -14.36539 -14.14239 -13.80690 -13.71475 -13.25978 -13.21727 -13.20726 -13.09929 -12.91596 -12.76231 -12.63354 -12.48260 -12.28002 -12.19079 -11.77416 -11.72222 -11.48415 -11.22698 -11.17763 -11.03478 -10.98021 -10.75476 -10.35074 -10.18707 -9.75826 -8.72328 -8.38499 -6.17467 1.18509 1.39663 1.40038 1.49841 1.53021 1.68137 1.88775 2.23337 2.30326 2.95362 3.18167 3.38320 3.47177 3.67095 3.77829 3.80177 3.85082 3.94634 4.03201 4.09072 4.10022 4.15190 4.21627 4.34290 4.37909 4.50916 4.54858 4.63420 4.65677 4.74515 4.78522 4.87982 4.90725 4.93099 4.97650 5.04922 5.07119 5.12141 5.20597 5.26542 5.37272 5.42239 5.43245 5.50212 5.67674 6.15712 6.29580 6.60264 7.02376 7.06769 7.32933 8.70898 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009002 B = 0.002759 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.733104 B =10144.611129 C =12982.471159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.128 3.872 3 H 0.079 0.921 4 C -0.112 4.112 5 C 0.142 3.858 6 H 0.085 0.915 7 N -0.705 5.705 8 C 0.508 3.492 9 O -0.584 6.584 10 C -0.123 4.123 11 C -0.101 4.101 12 C -0.145 4.145 13 C -0.146 4.146 14 C -0.123 4.123 15 C 0.085 3.915 16 N -0.611 5.611 17 C 0.549 3.451 18 O -0.555 6.555 19 C -0.123 4.123 20 S -0.142 6.142 21 C -0.549 4.549 22 H 0.078 0.922 23 C 0.015 3.985 24 N -0.909 5.909 25 Si 0.999 3.001 26 H -0.265 1.265 27 H -0.275 1.275 28 H -0.261 1.261 29 H 0.051 0.949 30 H 0.035 0.965 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.423 0.577 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.061 0.939 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.103 0.897 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.434 -8.940 -31.261 34.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.026 3.974 3 H 0.097 0.903 4 C -0.150 4.150 5 C 0.035 3.965 6 H 0.103 0.897 7 N -0.358 5.358 8 C 0.297 3.703 9 O -0.464 6.464 10 C -0.162 4.162 11 C -0.120 4.120 12 C -0.183 4.183 13 C -0.184 4.184 14 C -0.160 4.160 15 C -0.039 4.039 16 N -0.347 5.347 17 C 0.337 3.663 18 O -0.433 6.433 19 C -0.274 4.274 20 S 0.085 5.915 21 C -0.697 4.697 22 H 0.097 0.903 23 C -0.190 4.190 24 N -0.546 5.546 25 Si 0.821 3.179 26 H -0.190 1.190 27 H -0.200 1.200 28 H -0.185 1.185 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.261 0.739 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.080 0.920 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.122 0.878 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.753 -7.885 -30.255 32.467 hybrid contribution 0.913 -1.350 1.105 1.968 sum 9.666 -9.234 -29.150 32.069 Atomic orbital electron populations 1.22150 0.95046 1.01994 1.02870 1.21778 0.94783 0.96928 0.83940 0.90260 1.22979 1.04518 0.91824 0.95634 1.21789 0.91597 0.94414 0.88743 0.89682 1.45742 1.33369 1.06389 1.50344 1.21491 0.85711 0.82202 0.80882 1.90741 1.43780 1.65356 1.46493 1.21764 0.97904 0.94610 1.01947 1.22303 0.99060 0.93319 0.97279 1.23026 0.99907 0.98657 0.96685 1.22823 1.01867 0.96670 0.96994 1.22941 0.99572 0.97052 0.96485 1.22864 0.95890 0.88268 0.96894 1.48397 1.51049 1.31097 1.04148 1.19636 0.79897 0.84070 0.82674 1.90674 1.39251 1.29962 1.83405 1.23325 1.04503 1.02579 0.96987 1.85470 1.68400 1.42282 0.95357 1.23167 1.36536 1.16161 0.93790 0.90340 1.26135 0.95779 0.97917 0.99195 1.70179 1.38781 1.31415 1.14191 0.84947 0.78155 0.78001 0.76833 1.18957 1.20005 1.18524 0.92979 0.94530 0.88555 0.86881 0.86620 0.73855 0.85596 0.86340 0.90805 0.89372 0.94101 0.90929 0.90654 0.90884 0.88063 0.92024 0.89021 0.88703 0.87850 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 9.06 71.98 0.65 -3.15 16 2 C 0.13 2.74 3.49 45.34 0.16 2.90 16 3 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 4 C -0.11 -1.21 6.14 31.78 0.20 -1.01 16 5 C 0.14 2.26 3.42 46.38 0.16 2.42 16 6 H 0.09 1.84 7.54 -2.39 -0.02 1.82 16 7 N -0.70 -7.33 5.20 -435.97 -2.27 -9.59 16 8 C 0.51 8.03 7.83 87.66 0.69 8.71 16 9 O -0.58 -15.88 15.40 -3.05 -0.05 -15.93 16 10 C -0.12 -0.99 5.54 29.85 0.17 -0.82 16 11 C -0.10 -1.31 3.15 -10.27 -0.03 -1.34 16 12 C -0.15 -2.23 7.63 31.12 0.24 -1.99 16 13 C -0.15 -1.74 8.08 31.12 0.25 -1.49 16 14 C -0.12 -1.05 7.64 31.12 0.24 -0.81 16 15 C 0.08 1.88 6.39 86.86 0.55 2.44 16 16 N -0.61 -17.58 3.08 -788.02 -2.43 -20.01 16 17 C 0.55 22.20 7.65 87.66 0.67 22.87 16 18 O -0.56 -26.84 14.77 -3.03 -0.04 -26.89 16 19 C -0.12 -5.38 5.16 71.24 0.37 -5.02 16 20 S -0.14 -8.26 20.57 -56.49 -1.16 -9.42 16 21 C -0.55 -32.60 9.50 67.95 0.65 -31.95 16 22 H 0.08 4.39 7.80 -2.90 -0.02 4.37 16 23 C 0.01 0.86 5.49 84.86 0.47 1.32 16 24 N -0.91 -56.95 13.22 21.65 0.29 -56.67 16 25 Si 1.00 44.84 29.55 68.60 2.03 46.87 16 26 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 27 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 28 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.04 1.16 6.76 -2.39 -0.02 1.15 16 31 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.11 0.83 7.83 -2.39 -0.02 0.81 16 33 H 0.12 0.58 8.01 -2.39 -0.02 0.56 16 34 H 0.42 0.99 8.57 -92.71 -0.79 0.19 16 35 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.12 0.47 7.84 -2.39 -0.02 0.45 16 37 H 0.07 1.35 7.67 -2.39 -0.02 1.33 16 38 H 0.09 1.15 7.89 -2.39 -0.02 1.13 16 39 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.10 0.48 8.10 -2.38 -0.02 0.47 16 44 H 0.06 1.65 7.48 -2.39 -0.02 1.63 16 45 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.09 4.00 7.85 -2.40 -0.02 3.98 16 47 H 0.10 4.15 8.14 -2.39 -0.02 4.13 16 48 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -86.32 402.37 1.93 -84.38 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.15 Total: 14.18 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 5.42 Total: -6.93 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -4.41 Total: -86.27 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -0.09 Total: -42.81 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -1.16 Total: -9.42 kcal Total: -86.32 1.93 -84.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001511217711.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.759 kcal (2) G-P(sol) polarization free energy of solvation -86.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds