Wall clock time and date at job start Sat Apr 11 2020 06:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.32065 * 2 1 4 4 C 1.54908 * 110.45925 * 237.70160 * 2 1 3 5 5 C 1.55151 * 101.57869 * 204.10411 * 4 2 1 6 6 H 1.09000 * 110.87360 * 277.06461 * 5 4 2 7 7 N 1.46506 * 110.72070 * 153.86226 * 5 4 2 8 8 C 1.34773 * 119.99968 * 160.01940 * 7 5 4 9 9 O 1.21283 * 120.00360 * 359.73034 * 8 7 5 10 10 C 1.50706 * 120.00081 * 180.02562 * 8 7 5 11 11 C 1.52998 * 109.47348 * 179.72561 * 10 8 7 12 12 C 1.53779 * 113.61429 * 274.13533 * 11 10 8 13 13 C 1.53959 * 87.01850 * 220.04687 * 12 11 10 14 14 C 1.53779 * 113.61296 * 176.52521 * 11 10 8 15 15 C 1.54322 * 102.94474 * 35.50112 * 5 4 2 16 16 N 1.47012 * 107.27198 * 337.80525 * 15 5 4 17 17 C 1.34776 * 125.65188 * 178.90749 * 16 15 5 18 18 O 1.21282 * 120.00151 * 180.02562 * 17 16 15 19 19 C 1.50696 * 120.00089 * 0.02562 * 17 16 15 20 20 S 1.80997 * 109.47667 * 180.02562 * 19 17 16 21 21 C 1.76200 * 100.00349 * 180.02562 * 20 19 17 22 22 H 1.08005 * 119.99644 * 0.02562 * 21 20 19 23 23 C 1.38793 * 120.00188 * 179.97438 * 21 20 19 24 24 N 1.31639 * 120.00062 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00409 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46970 * 90.00064 * 25 23 21 27 27 H 1.48497 * 109.47436 * 210.00518 * 25 23 21 28 28 H 1.48502 * 109.46552 * 330.00458 * 25 23 21 29 29 H 1.09003 * 109.47397 * 299.21646 * 1 2 3 30 30 H 1.08996 * 109.47266 * 59.21644 * 1 2 3 31 31 H 1.09003 * 109.47087 * 179.22261 * 1 2 3 32 32 H 1.08994 * 111.00584 * 86.02554 * 4 2 1 33 33 H 1.09006 * 111.00031 * 322.17587 * 4 2 1 34 34 H 0.96998 * 119.99507 * 340.02795 * 7 5 4 35 35 H 1.09001 * 109.46564 * 299.73030 * 10 8 7 36 36 H 1.08998 * 109.47012 * 59.72084 * 10 8 7 37 37 H 1.09003 * 112.84550 * 45.33730 * 11 10 8 38 38 H 1.08994 * 113.61750 * 334.57143 * 12 11 10 39 39 H 1.09007 * 113.60960 * 105.47471 * 12 11 10 40 40 H 1.09005 * 113.53954 * 270.81365 * 13 12 11 41 41 H 1.08992 * 113.73879 * 139.94600 * 13 12 11 42 42 H 1.09003 * 113.61684 * 254.52851 * 14 11 10 43 43 H 1.08995 * 113.61332 * 25.43891 * 14 11 10 44 44 H 1.09006 * 109.88458 * 97.22706 * 15 5 4 45 45 H 1.09004 * 109.88464 * 218.38993 * 15 5 4 46 46 H 1.09009 * 109.47191 * 300.00575 * 19 17 16 47 47 H 1.09007 * 109.46749 * 60.00247 * 19 17 16 48 48 H 0.96992 * 119.99894 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9085 1.0222 0.0000 4 6 2.0715 -0.7755 -1.2268 5 6 3.4802 -1.1970 -0.7318 6 1 4.1982 -0.3885 -0.8695 7 7 3.9300 -2.4098 -1.4198 8 6 5.2413 -2.7191 -1.4521 9 8 6.0496 -1.9910 -0.9160 10 6 5.7040 -3.9664 -2.1603 11 6 7.2263 -4.0780 -2.0545 12 6 7.9782 -3.3078 -3.1528 13 6 8.9466 -4.5031 -3.2157 14 6 7.7941 -5.3655 -2.6747 15 6 3.2508 -1.4738 0.7689 16 7 2.0431 -0.7372 1.1691 17 6 1.4953 -0.7364 2.4005 18 8 0.4929 -0.0892 2.6179 19 6 2.1282 -1.5399 3.5072 20 16 1.1666 -1.3359 5.0269 21 6 2.1034 -2.3512 6.1206 22 1 2.9832 -2.8641 5.7607 23 6 1.7116 -2.4909 7.4447 24 7 0.6396 -1.8653 7.8834 25 14 2.7052 -3.5667 8.6044 26 1 3.7557 -2.7480 9.2611 27 1 1.8072 -4.1416 9.6379 28 1 3.3426 -4.6658 7.8357 29 1 -0.3634 0.5016 0.8969 30 1 -0.3633 0.5259 -0.8828 31 1 -0.3633 -1.0276 -0.0139 32 1 2.1420 -0.1263 -2.0994 33 1 1.4549 -1.6487 -1.4402 34 1 3.2839 -2.9900 -1.8520 35 1 5.2426 -4.8390 -1.6979 36 1 5.4154 -3.9164 -3.2102 37 1 7.5964 -3.8776 -1.0490 38 1 7.3970 -3.1683 -4.0642 39 1 8.4424 -2.3867 -2.8003 40 1 9.7883 -4.4181 -2.5283 41 1 9.2519 -4.7675 -4.2280 42 1 8.1099 -6.1032 -1.9369 43 1 7.1625 -5.7895 -3.4552 44 1 3.1043 -2.5418 0.9308 45 1 4.1068 -1.1235 1.3457 46 1 2.1457 -2.5933 3.2273 47 1 3.1476 -1.1908 3.6723 48 1 0.3656 -1.9633 8.8086 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001511217713.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:06 Heat of formation + Delta-G solvation = -58.174484 kcal Electronic energy + Delta-G solvation = -27002.730462 eV Core-core repulsion = 23184.165345 eV Total energy + Delta-G solvation = -3818.565117 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.66540 -39.80651 -38.58583 -37.22428 -34.46301 -32.41811 -32.23471 -31.38391 -29.53747 -28.64611 -25.95061 -25.88627 -25.46540 -24.34523 -22.51360 -21.37260 -20.72156 -19.70706 -18.93607 -17.61638 -17.42069 -16.91373 -16.61234 -16.10363 -15.61261 -15.34283 -15.00337 -14.81024 -14.79193 -14.28191 -14.02453 -13.77310 -13.64901 -13.29274 -13.11250 -12.82093 -12.79815 -12.59635 -12.29662 -12.22759 -12.10761 -11.97134 -11.80975 -11.65621 -11.24486 -11.07844 -11.04847 -10.99622 -10.97095 -10.75006 -10.67420 -10.54277 -10.04168 -9.80406 -9.54109 -9.10713 -9.05460 -8.51419 -8.22877 -6.49077 -6.20675 -3.91111 2.35413 2.65989 2.98902 3.07573 3.23424 3.27529 3.31591 3.62968 4.08643 4.19951 4.21786 4.27252 4.33094 4.34352 4.51637 4.66487 4.69475 4.92358 4.96319 5.00409 5.08080 5.09970 5.14492 5.20900 5.33292 5.34592 5.40155 5.40724 5.50558 5.55705 5.58216 5.62018 5.64534 5.68647 5.69932 5.74328 5.91082 5.92328 6.08434 6.13704 6.16035 6.19038 6.29935 6.63640 7.14962 7.60793 7.66575 7.92975 8.36550 8.57367 9.24734 10.86756 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009741 B = 0.002580 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.900681 B =10850.282680 C =13417.244298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.138 3.862 3 H 0.076 0.924 4 C -0.135 4.135 5 C 0.136 3.864 6 H 0.105 0.895 7 N -0.725 5.725 8 C 0.513 3.487 9 O -0.531 6.531 10 C -0.132 4.132 11 C -0.095 4.095 12 C -0.135 4.135 13 C -0.143 4.143 14 C -0.139 4.139 15 C 0.093 3.907 16 N -0.623 5.623 17 C 0.552 3.448 18 O -0.511 6.511 19 C -0.148 4.148 20 S -0.059 6.059 21 C -0.534 4.534 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.402 0.598 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.035 -4.560 -27.616 29.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.035 3.965 3 H 0.094 0.906 4 C -0.173 4.173 5 C 0.030 3.970 6 H 0.123 0.877 7 N -0.377 5.377 8 C 0.300 3.700 9 O -0.407 6.407 10 C -0.172 4.172 11 C -0.114 4.114 12 C -0.172 4.172 13 C -0.181 4.181 14 C -0.176 4.176 15 C -0.032 4.032 16 N -0.361 5.361 17 C 0.341 3.659 18 O -0.385 6.385 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.202 1.202 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.237 0.763 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.986 -3.034 -26.655 28.292 hybrid contribution 1.519 -1.819 0.308 2.390 sum 10.505 -4.853 -26.347 28.776 Atomic orbital electron populations 1.22178 0.93430 1.02837 1.03849 1.21791 0.95720 0.95435 0.83602 0.90600 1.23172 0.94676 1.01344 0.98148 1.21924 0.96356 0.87961 0.90775 0.87709 1.46026 1.08207 1.26349 1.57151 1.20812 0.81896 0.87387 0.79875 1.90731 1.53177 1.51449 1.45348 1.21722 0.97742 0.96152 1.01592 1.22347 0.92107 0.96588 1.00346 1.22969 0.98059 0.97813 0.98355 1.22830 0.97035 0.96954 1.01271 1.22982 0.97926 0.96371 1.00341 1.22366 0.88312 0.97345 0.95197 1.48526 1.28263 1.49834 1.09478 1.19967 0.83615 0.81210 0.81096 1.90642 1.24449 1.42550 1.80843 1.23530 1.04587 1.01725 1.00000 1.85342 1.36040 1.64488 0.97413 1.22858 1.14717 1.33554 0.97122 0.90980 1.24989 0.95342 0.95976 0.97272 1.70019 1.23068 1.40707 1.16516 0.86169 0.79483 0.80012 0.79854 1.20246 1.20745 1.19697 0.88854 0.92347 0.92618 0.89258 0.89846 0.76295 0.88579 0.88835 0.88130 0.90479 0.91186 0.90181 0.91565 0.91333 0.90113 0.91107 0.90663 0.89501 0.89350 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 8.71 37.16 0.32 -1.71 16 2 C 0.14 1.59 3.76 -66.42 -0.25 1.34 16 3 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -1.03 6.11 -24.59 -0.15 -1.18 16 5 C 0.14 1.22 3.24 -66.10 -0.21 1.00 16 6 H 0.10 1.05 7.69 -51.93 -0.40 0.65 16 7 N -0.72 -5.20 5.13 -52.03 -0.27 -5.47 16 8 C 0.51 4.61 7.83 -10.98 -0.09 4.52 16 9 O -0.53 -7.01 15.51 5.56 0.09 -6.92 16 10 C -0.13 -0.78 5.52 -27.88 -0.15 -0.94 16 11 C -0.10 -0.69 3.11 -89.81 -0.28 -0.97 16 12 C -0.13 -0.95 7.65 -25.83 -0.20 -1.15 16 13 C -0.14 -0.88 8.09 -25.82 -0.21 -1.09 16 14 C -0.14 -0.80 7.65 -25.92 -0.20 -1.00 16 15 C 0.09 1.12 6.24 -3.07 -0.02 1.10 16 16 N -0.62 -9.07 3.24 -163.05 -0.53 -9.60 16 17 C 0.55 10.71 7.65 -10.99 -0.08 10.63 16 18 O -0.51 -11.47 13.51 5.56 0.08 -11.40 16 19 C -0.15 -3.13 5.35 36.00 0.19 -2.94 16 20 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 21 C -0.53 -15.45 9.50 30.94 0.29 -15.16 16 22 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.37 13.22 55.49 0.73 -25.63 16 25 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 29 H 0.09 1.48 5.89 -51.93 -0.31 1.18 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.57 7.92 -51.93 -0.41 0.16 16 34 H 0.40 1.77 8.52 -40.82 -0.35 1.42 16 35 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.37 7.87 -51.93 -0.41 -0.04 16 37 H 0.10 0.94 7.73 -51.93 -0.40 0.54 16 38 H 0.08 0.47 7.92 -51.93 -0.41 0.06 16 39 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.38 8.10 -51.93 -0.42 -0.05 16 44 H 0.07 0.85 8.03 -51.93 -0.42 0.43 16 45 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 47 H 0.09 1.79 8.14 -51.91 -0.42 1.37 16 48 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 401.44 15.07 6.05 6.05 Total: -1.00 -35.78 401.44 -10.35 -46.14 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -8.14 Total: -0.47 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -1.13 Total: -5.51 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: -0.06 Total: -40.70 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.16 Total: -18.32 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.78 -10.35 -46.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001511217713.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.038 kcal (2) G-P(sol) polarization free energy of solvation -35.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds