Wall clock time and date at job start Sat Apr 11 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.32065 * 2 1 4 4 C 1.54908 * 110.45925 * 237.70160 * 2 1 3 5 5 C 1.55151 * 101.57869 * 204.10411 * 4 2 1 6 6 H 1.09000 * 110.87360 * 277.06461 * 5 4 2 7 7 N 1.46506 * 110.72070 * 153.86226 * 5 4 2 8 8 C 1.34773 * 119.99968 * 160.01940 * 7 5 4 9 9 O 1.21283 * 120.00360 * 359.73034 * 8 7 5 10 10 C 1.50706 * 120.00081 * 180.02562 * 8 7 5 11 11 C 1.52998 * 109.47348 * 179.72561 * 10 8 7 12 12 C 1.53779 * 113.61429 * 274.13533 * 11 10 8 13 13 C 1.53959 * 87.01850 * 220.04687 * 12 11 10 14 14 C 1.53779 * 113.61296 * 176.52521 * 11 10 8 15 15 C 1.54322 * 102.94474 * 35.50112 * 5 4 2 16 16 N 1.47012 * 107.27198 * 337.80525 * 15 5 4 17 17 C 1.34776 * 125.65188 * 178.90749 * 16 15 5 18 18 O 1.21282 * 120.00151 * 180.02562 * 17 16 15 19 19 C 1.50696 * 120.00089 * 0.02562 * 17 16 15 20 20 S 1.80997 * 109.47667 * 180.02562 * 19 17 16 21 21 C 1.76200 * 100.00349 * 180.02562 * 20 19 17 22 22 H 1.08005 * 119.99644 * 0.02562 * 21 20 19 23 23 C 1.38793 * 120.00188 * 179.97438 * 21 20 19 24 24 N 1.31639 * 120.00062 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00409 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46970 * 90.00064 * 25 23 21 27 27 H 1.48497 * 109.47436 * 210.00518 * 25 23 21 28 28 H 1.48502 * 109.46552 * 330.00458 * 25 23 21 29 29 H 1.09003 * 109.47397 * 299.21646 * 1 2 3 30 30 H 1.08996 * 109.47266 * 59.21644 * 1 2 3 31 31 H 1.09003 * 109.47087 * 179.22261 * 1 2 3 32 32 H 1.08994 * 111.00584 * 86.02554 * 4 2 1 33 33 H 1.09006 * 111.00031 * 322.17587 * 4 2 1 34 34 H 0.96998 * 119.99507 * 340.02795 * 7 5 4 35 35 H 1.09001 * 109.46564 * 299.73030 * 10 8 7 36 36 H 1.08998 * 109.47012 * 59.72084 * 10 8 7 37 37 H 1.09003 * 112.84550 * 45.33730 * 11 10 8 38 38 H 1.08994 * 113.61750 * 334.57143 * 12 11 10 39 39 H 1.09007 * 113.60960 * 105.47471 * 12 11 10 40 40 H 1.09005 * 113.53954 * 270.81365 * 13 12 11 41 41 H 1.08992 * 113.73879 * 139.94600 * 13 12 11 42 42 H 1.09003 * 113.61684 * 254.52851 * 14 11 10 43 43 H 1.08995 * 113.61332 * 25.43891 * 14 11 10 44 44 H 1.09006 * 109.88458 * 97.22706 * 15 5 4 45 45 H 1.09004 * 109.88464 * 218.38993 * 15 5 4 46 46 H 1.09009 * 109.47191 * 300.00575 * 19 17 16 47 47 H 1.09007 * 109.46749 * 60.00247 * 19 17 16 48 48 H 0.96992 * 119.99894 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9085 1.0222 0.0000 4 6 2.0715 -0.7755 -1.2268 5 6 3.4802 -1.1970 -0.7318 6 1 4.1982 -0.3885 -0.8695 7 7 3.9300 -2.4098 -1.4198 8 6 5.2413 -2.7191 -1.4521 9 8 6.0496 -1.9910 -0.9160 10 6 5.7040 -3.9664 -2.1603 11 6 7.2263 -4.0780 -2.0545 12 6 7.9782 -3.3078 -3.1528 13 6 8.9466 -4.5031 -3.2157 14 6 7.7941 -5.3655 -2.6747 15 6 3.2508 -1.4738 0.7689 16 7 2.0431 -0.7372 1.1691 17 6 1.4953 -0.7364 2.4005 18 8 0.4929 -0.0892 2.6179 19 6 2.1282 -1.5399 3.5072 20 16 1.1666 -1.3359 5.0269 21 6 2.1034 -2.3512 6.1206 22 1 2.9832 -2.8641 5.7607 23 6 1.7116 -2.4909 7.4447 24 7 0.6396 -1.8653 7.8834 25 14 2.7052 -3.5667 8.6044 26 1 3.7557 -2.7480 9.2611 27 1 1.8072 -4.1416 9.6379 28 1 3.3426 -4.6658 7.8357 29 1 -0.3634 0.5016 0.8969 30 1 -0.3633 0.5259 -0.8828 31 1 -0.3633 -1.0276 -0.0139 32 1 2.1420 -0.1263 -2.0994 33 1 1.4549 -1.6487 -1.4402 34 1 3.2839 -2.9900 -1.8520 35 1 5.2426 -4.8390 -1.6979 36 1 5.4154 -3.9164 -3.2102 37 1 7.5964 -3.8776 -1.0490 38 1 7.3970 -3.1683 -4.0642 39 1 8.4424 -2.3867 -2.8003 40 1 9.7883 -4.4181 -2.5283 41 1 9.2519 -4.7675 -4.2280 42 1 8.1099 -6.1032 -1.9369 43 1 7.1625 -5.7895 -3.4552 44 1 3.1043 -2.5418 0.9308 45 1 4.1068 -1.1235 1.3457 46 1 2.1457 -2.5933 3.2273 47 1 3.1476 -1.1908 3.6723 48 1 0.3656 -1.9633 8.8086 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001511217713.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:05 Heat of formation + Delta-G solvation = -81.927711 kcal Electronic energy + Delta-G solvation = -27003.760479 eV Core-core repulsion = 23184.165345 eV Total energy + Delta-G solvation = -3819.595134 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.59063 -40.75382 -39.30806 -38.36665 -35.34196 -34.62126 -33.43199 -32.06321 -30.45772 -30.02973 -27.70294 -26.83429 -26.42255 -25.02501 -23.49722 -22.18990 -21.46925 -20.38213 -20.20860 -19.45660 -18.30376 -17.80243 -17.72827 -16.97070 -16.90535 -16.56950 -16.43884 -16.04757 -15.84468 -15.41814 -15.09716 -14.76683 -14.68259 -14.48416 -14.33468 -14.06777 -13.74263 -13.47489 -13.25754 -13.22316 -13.15833 -13.06307 -12.91933 -12.75884 -12.65236 -12.56618 -12.29670 -12.18800 -11.89082 -11.75993 -11.48762 -11.22132 -11.17676 -11.03814 -10.75311 -10.72878 -10.34049 -10.16023 -9.75191 -8.71320 -8.38102 -6.16804 1.19538 1.39681 1.40889 1.52135 1.53047 1.67400 1.91834 2.23669 2.28792 2.95697 3.16989 3.37850 3.46119 3.65765 3.78627 3.82079 3.84751 3.95497 4.01449 4.04768 4.13228 4.20022 4.22620 4.35056 4.40312 4.51221 4.55932 4.61339 4.70804 4.74675 4.77914 4.86291 4.90685 4.92179 4.96214 5.06074 5.12243 5.15654 5.20951 5.24712 5.37661 5.43244 5.46064 5.57046 5.67620 6.16059 6.31878 6.58461 7.02840 7.09897 7.30873 8.71163 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009741 B = 0.002580 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.900681 B =10850.282680 C =13417.244298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.127 3.873 3 H 0.080 0.920 4 C -0.113 4.113 5 C 0.146 3.854 6 H 0.097 0.903 7 N -0.709 5.709 8 C 0.510 3.490 9 O -0.581 6.581 10 C -0.125 4.125 11 C -0.103 4.103 12 C -0.137 4.137 13 C -0.145 4.145 14 C -0.129 4.129 15 C 0.087 3.913 16 N -0.613 5.613 17 C 0.550 3.450 18 O -0.550 6.550 19 C -0.124 4.124 20 S -0.140 6.140 21 C -0.549 4.549 22 H 0.078 0.922 23 C 0.015 3.985 24 N -0.909 5.909 25 Si 0.999 3.001 26 H -0.268 1.268 27 H -0.274 1.274 28 H -0.259 1.259 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.420 0.580 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.101 0.899 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.100 0.900 47 H 0.095 0.905 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.896 -6.568 -30.534 33.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 H 0.098 0.902 4 C -0.151 4.151 5 C 0.039 3.961 6 H 0.115 0.885 7 N -0.363 5.363 8 C 0.298 3.702 9 O -0.460 6.460 10 C -0.164 4.164 11 C -0.122 4.122 12 C -0.175 4.175 13 C -0.182 4.182 14 C -0.166 4.166 15 C -0.038 4.038 16 N -0.349 5.349 17 C 0.338 3.662 18 O -0.428 6.428 19 C -0.275 4.275 20 S 0.087 5.913 21 C -0.697 4.697 22 H 0.096 0.904 23 C -0.190 4.190 24 N -0.545 5.545 25 Si 0.820 3.180 26 H -0.194 1.194 27 H -0.199 1.199 28 H -0.183 1.183 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.140 0.860 33 H 0.120 0.880 34 H 0.259 0.741 35 H 0.133 0.867 36 H 0.142 0.858 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.120 0.880 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.119 0.881 47 H 0.113 0.887 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.846 -5.066 -29.645 31.646 hybrid contribution 1.290 -1.138 1.110 2.048 sum 11.136 -6.205 -28.535 31.253 Atomic orbital electron populations 1.22081 0.93880 1.02402 1.03361 1.22141 0.95471 0.96123 0.83811 0.90213 1.23124 0.93069 1.01997 0.96909 1.21709 0.97182 0.88543 0.88671 0.88532 1.45880 1.08177 1.25892 1.56309 1.21421 0.81840 0.87743 0.79168 1.90724 1.54540 1.53188 1.47512 1.21764 0.96541 0.94998 1.03096 1.22301 0.93312 0.97750 0.98846 1.23008 0.98543 0.97048 0.98858 1.22843 0.96914 0.96685 1.01806 1.22966 0.97589 0.95490 1.00536 1.22569 0.86518 0.97118 0.97566 1.48440 1.28426 1.49277 1.08717 1.19602 0.83368 0.80991 0.82273 1.90644 1.26121 1.44201 1.81794 1.23339 1.03574 1.03112 0.97469 1.85451 1.38840 1.65246 1.01750 1.23169 1.14945 1.33755 0.97812 0.90384 1.26123 0.96448 0.97331 0.99102 1.70173 1.24916 1.42271 1.17172 0.84957 0.77773 0.78059 0.77214 1.19351 1.19892 1.18318 0.93000 0.88990 0.93087 0.85984 0.88039 0.74140 0.86656 0.85811 0.91222 0.88911 0.93545 0.91091 0.90359 0.91512 0.88036 0.90665 0.92210 0.88134 0.88664 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 8.71 71.98 0.63 -3.10 16 2 C 0.13 2.69 3.76 45.47 0.17 2.86 16 3 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 4 C -0.11 -1.28 6.11 31.98 0.20 -1.08 16 5 C 0.15 2.25 3.24 46.18 0.15 2.40 16 6 H 0.10 1.76 7.69 -2.39 -0.02 1.74 16 7 N -0.71 -7.90 5.13 -436.91 -2.24 -10.14 16 8 C 0.51 8.10 7.83 87.66 0.69 8.79 16 9 O -0.58 -15.15 15.51 -3.04 -0.05 -15.20 16 10 C -0.12 -1.10 5.52 29.85 0.16 -0.94 16 11 C -0.10 -1.37 3.11 -10.27 -0.03 -1.40 16 12 C -0.14 -1.79 7.65 31.18 0.24 -1.55 16 13 C -0.15 -1.59 8.09 31.18 0.25 -1.33 16 14 C -0.13 -1.19 7.65 31.12 0.24 -0.95 16 15 C 0.09 1.99 6.24 86.73 0.54 2.53 16 16 N -0.61 -17.49 3.24 -788.17 -2.56 -20.05 16 17 C 0.55 21.80 7.65 87.66 0.67 22.47 16 18 O -0.55 -25.80 13.51 -3.04 -0.04 -25.84 16 19 C -0.12 -5.36 5.35 71.23 0.38 -4.98 16 20 S -0.14 -8.03 20.57 -56.49 -1.16 -9.19 16 21 C -0.55 -32.35 9.50 67.95 0.65 -31.70 16 22 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 23 C 0.01 0.87 5.49 84.85 0.47 1.33 16 24 N -0.91 -56.54 13.22 21.65 0.29 -56.25 16 25 Si 1.00 44.53 29.55 68.60 2.03 46.56 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 28 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 29 H 0.05 1.69 5.89 -2.39 -0.01 1.67 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.12 0.74 8.14 -2.39 -0.02 0.73 16 33 H 0.10 0.87 7.92 -2.38 -0.02 0.86 16 34 H 0.42 1.79 8.52 -92.71 -0.79 1.00 16 35 H 0.12 0.62 8.14 -2.39 -0.02 0.61 16 36 H 0.12 0.39 7.87 -2.39 -0.02 0.38 16 37 H 0.07 1.35 7.73 -2.39 -0.02 1.33 16 38 H 0.09 0.90 7.92 -2.39 -0.02 0.88 16 39 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.10 0.55 8.10 -2.39 -0.02 0.53 16 44 H 0.08 1.68 8.03 -2.38 -0.02 1.66 16 45 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.10 4.02 8.14 -2.39 -0.02 4.00 16 47 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 48 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -83.36 401.44 1.82 -81.54 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.16 Total: 15.24 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 5.39 Total: -6.66 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -4.51 Total: -86.44 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -0.09 Total: -41.04 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.16 Total: -9.19 kcal Total: -83.36 1.82 -81.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001511217713.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.391 kcal (2) G-P(sol) polarization free energy of solvation -83.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds