Wall clock time and date at job start Sat Apr 11 2020 06:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.99756 * 2 1 4 4 C 1.54316 * 109.88294 * 238.89657 * 2 1 3 5 5 C 1.55156 * 102.94339 * 218.39184 * 4 2 1 6 6 H 1.08996 * 111.00936 * 153.57877 * 5 4 2 7 7 N 1.46500 * 111.00503 * 277.43080 * 5 4 2 8 8 C 1.34772 * 120.00234 * 205.00011 * 7 5 4 9 9 O 1.21288 * 120.00060 * 359.97438 * 8 7 5 10 10 C 1.50705 * 120.00282 * 179.97438 * 8 7 5 11 11 C 1.52996 * 109.47238 * 178.36043 * 10 8 7 12 12 C 1.52995 * 115.55480 * 294.33559 * 11 10 8 13 13 C 1.53001 * 117.49812 * 148.65970 * 11 10 8 14 14 C 1.53002 * 117.49685 * 80.00349 * 11 10 8 15 15 C 1.54913 * 101.58108 * 35.50040 * 5 4 2 16 16 N 1.47027 * 109.87859 * 121.08947 * 2 1 3 17 17 C 1.34781 * 125.64757 * 298.31739 * 16 2 1 18 18 O 1.21282 * 120.00073 * 0.02562 * 17 16 2 19 19 C 1.50702 * 119.99976 * 179.97438 * 17 16 2 20 20 S 1.80997 * 109.47083 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99885 * 180.02562 * 20 19 17 22 22 H 1.08007 * 120.00123 * 359.97438 * 21 20 19 23 23 C 1.38795 * 119.99891 * 180.02562 * 21 20 19 24 24 N 1.31629 * 120.00460 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99912 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47264 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47031 * 119.99765 * 25 23 21 28 28 H 1.48499 * 109.47203 * 240.00061 * 25 23 21 29 29 H 1.08997 * 109.47235 * 181.09882 * 1 2 3 30 30 H 1.09000 * 109.47238 * 301.10230 * 1 2 3 31 31 H 1.09007 * 109.46829 * 61.10342 * 1 2 3 32 32 H 1.08998 * 110.72100 * 336.75054 * 4 2 1 33 33 H 1.08997 * 110.72032 * 100.02819 * 4 2 1 34 34 H 0.97008 * 120.00140 * 24.99565 * 7 5 4 35 35 H 1.08999 * 109.47047 * 298.36341 * 10 8 7 36 36 H 1.09001 * 109.46596 * 58.36387 * 10 8 7 37 37 H 1.09000 * 109.47020 * 63.44440 * 12 11 10 38 38 H 1.08995 * 109.47373 * 183.45151 * 12 11 10 39 39 H 1.09006 * 109.46706 * 303.44909 * 12 11 10 40 40 H 1.09003 * 117.49602 * 0.02562 * 13 11 10 41 41 H 1.08997 * 117.49704 * 145.02139 * 13 11 10 42 42 H 1.09001 * 117.50195 * 214.98153 * 14 11 10 43 43 H 1.09003 * 117.49805 * 359.97438 * 14 11 10 44 44 H 1.08993 * 110.36762 * 204.15135 * 15 5 4 45 45 H 1.08999 * 110.36469 * 81.83374 * 15 5 4 46 46 H 1.08997 * 109.47046 * 300.00786 * 19 17 16 47 47 H 1.09000 * 109.46425 * 60.00757 * 19 17 16 48 48 H 0.96991 * 120.00565 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7497 -1.2425 5 6 3.2876 -1.5143 -0.6921 6 1 3.4853 -2.4112 -1.2792 7 7 4.4675 -0.6469 -0.6491 8 6 5.7020 -1.1854 -0.6976 9 8 5.8362 -2.3883 -0.7763 10 6 6.9156 -0.2931 -0.6539 11 6 8.1814 -1.1520 -0.6819 12 6 8.4008 -2.0443 0.5414 13 6 9.4210 -0.5616 -1.3570 14 6 8.6413 -1.6884 -2.0390 15 6 2.8145 -1.8793 0.7371 16 7 2.0300 -0.7140 1.1841 17 6 1.8085 -0.3609 2.4658 18 8 1.1452 0.6226 2.7180 19 6 2.3841 -1.1890 3.5857 20 16 1.9138 -0.4635 5.1758 21 6 2.6974 -1.5976 6.2732 22 1 3.2573 -2.4323 5.8779 23 6 2.5941 -1.4189 7.6458 24 7 1.9113 -0.4019 8.1276 25 14 3.4242 -2.6217 8.8093 26 1 4.1231 -3.6694 8.0224 27 1 4.4082 -1.8960 9.6521 28 1 2.4008 -3.2562 9.6782 29 1 -0.3633 -1.0274 0.0197 30 1 -0.3634 0.5309 0.8799 31 1 -0.3633 0.4966 -0.8998 32 1 1.3052 -1.4461 -1.6180 33 1 2.3530 -0.0462 -2.0200 34 1 4.3601 0.3151 -0.5858 35 1 6.9087 0.3721 -1.5173 36 1 6.8985 0.2989 0.2612 37 1 7.5948 -2.7751 0.6072 38 1 9.3547 -2.5629 0.4465 39 1 8.4090 -1.4303 1.4421 40 1 9.3348 0.4390 -1.7808 41 1 10.3927 -0.8090 -0.9297 42 1 9.1003 -2.6768 -2.0603 43 1 8.0417 -1.4297 -2.9118 44 1 3.6715 -2.0337 1.3926 45 1 2.1886 -2.7714 0.7133 46 1 1.9968 -2.2058 3.5218 47 1 3.4707 -1.2081 3.5018 48 1 1.8388 -0.2773 9.0868 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001511218251.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:18 Heat of formation + Delta-G solvation = -54.059088 kcal Electronic energy + Delta-G solvation = -27605.064756 eV Core-core repulsion = 23786.678096 eV Total energy + Delta-G solvation = -3818.386660 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.68264 -39.64477 -37.99239 -37.11411 -34.20608 -32.43111 -32.19203 -30.94493 -29.34004 -28.71103 -28.02686 -26.02827 -25.48600 -22.90239 -22.64966 -21.74871 -20.67446 -19.26241 -18.96454 -17.67512 -17.27014 -17.08009 -16.37828 -15.85508 -15.52971 -15.22880 -14.80878 -14.70531 -14.44469 -14.31286 -14.13578 -13.80567 -13.65437 -13.11131 -13.01805 -12.83212 -12.58834 -12.52208 -12.40098 -12.28101 -12.09091 -11.88353 -11.73063 -11.63962 -11.51546 -11.37021 -11.06954 -11.01415 -10.90008 -10.75200 -10.58817 -10.19384 -9.80773 -9.67948 -9.51280 -9.27925 -9.07431 -8.49780 -8.23662 -6.50574 -6.21991 -3.92490 2.43916 2.81820 2.88589 3.05891 3.21737 3.26474 3.31634 3.58122 3.60498 4.13535 4.20871 4.28736 4.34101 4.47814 4.58742 4.67311 4.72982 4.89707 4.93998 5.05008 5.13316 5.16596 5.18936 5.26754 5.32548 5.38517 5.39094 5.48990 5.52539 5.59918 5.63869 5.64782 5.65495 5.68623 5.79332 5.86266 5.88969 5.91109 5.99172 6.14215 6.17036 6.23786 6.27786 6.51147 7.24403 7.60061 7.65372 8.02245 8.35642 8.55655 9.23706 10.85503 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008816 B = 0.003205 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.184858 B = 8734.145094 C =11269.768448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 H 0.073 0.927 4 C -0.134 4.134 5 C 0.132 3.868 6 H 0.112 0.888 7 N -0.722 5.722 8 C 0.517 3.483 9 O -0.529 6.529 10 C -0.106 4.106 11 C -0.106 4.106 12 C -0.118 4.118 13 C -0.178 4.178 14 C -0.164 4.164 15 C 0.090 3.910 16 N -0.621 5.621 17 C 0.551 3.449 18 O -0.513 6.513 19 C -0.147 4.147 20 S -0.060 6.060 21 C -0.534 4.534 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.402 0.598 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.594 -0.436 -24.446 25.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 H 0.091 0.909 4 C -0.173 4.173 5 C 0.026 3.974 6 H 0.130 0.870 7 N -0.375 5.375 8 C 0.304 3.696 9 O -0.404 6.404 10 C -0.146 4.146 11 C -0.107 4.107 12 C -0.175 4.175 13 C -0.215 4.215 14 C -0.201 4.201 15 C -0.034 4.034 16 N -0.359 5.359 17 C 0.339 3.661 18 O -0.387 6.387 19 C -0.297 4.297 20 S 0.166 5.834 21 C -0.682 4.682 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.236 0.764 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.100 0.900 45 H 0.096 0.904 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.627 0.265 -23.870 25.061 hybrid contribution 1.206 -1.419 0.532 1.937 sum 8.834 -1.154 -23.338 24.980 Atomic orbital electron populations 1.22139 0.94562 1.02430 1.02978 1.21492 0.95020 0.96174 0.84267 0.90859 1.23082 0.96864 1.00211 0.97126 1.22047 0.84555 0.94791 0.95977 0.87022 1.45956 1.05227 1.10582 1.75701 1.20647 0.84171 0.89341 0.75417 1.90696 1.86266 1.15131 1.48339 1.21224 0.91157 0.97612 1.04614 1.21017 0.93406 1.00918 0.95346 1.21368 1.02171 0.98985 0.95024 1.23144 0.95784 0.98290 1.04254 1.22941 1.03209 0.98405 0.95504 1.22728 0.95885 0.89298 0.95530 1.48605 1.53864 1.28606 1.04843 1.19986 0.79720 0.84993 0.81382 1.90693 1.38566 1.26929 1.82560 1.23515 1.03551 1.02659 1.00022 1.85354 1.69696 1.37712 0.90604 1.22900 1.38183 1.14034 0.93084 0.90917 1.24985 0.95235 0.95984 0.97346 1.70022 1.38614 1.28126 1.13557 0.86126 0.79042 0.80297 0.80111 1.19579 1.20538 1.20547 0.92475 0.90736 0.92031 0.88829 0.89461 0.76412 0.88887 0.88215 0.90637 0.92723 0.92433 0.88899 0.88664 0.88797 0.89214 0.89987 0.90444 0.89410 0.89526 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.10 37.16 0.34 -1.48 16 2 C 0.13 1.43 3.45 -66.95 -0.23 1.20 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.13 -0.95 6.08 -24.90 -0.15 -1.10 16 5 C 0.13 1.14 3.43 -65.78 -0.23 0.91 16 6 H 0.11 0.98 7.54 -51.93 -0.39 0.59 16 7 N -0.72 -6.02 5.19 -51.73 -0.27 -6.29 16 8 C 0.52 5.13 7.69 -10.98 -0.08 5.04 16 9 O -0.53 -6.96 14.11 5.55 0.08 -6.88 16 10 C -0.11 -0.83 5.59 -27.88 -0.16 -0.98 16 11 C -0.11 -0.94 1.60 -154.51 -0.25 -1.19 16 12 C -0.12 -1.19 9.45 37.15 0.35 -0.84 16 13 C -0.18 -1.29 9.92 -26.69 -0.26 -1.55 16 14 C -0.16 -1.36 9.92 -26.69 -0.26 -1.63 16 15 C 0.09 1.02 6.38 -2.53 -0.02 1.00 16 16 N -0.62 -8.50 3.06 -163.02 -0.50 -9.00 16 17 C 0.55 10.40 7.66 -10.98 -0.08 10.31 16 18 O -0.51 -11.48 14.91 5.56 0.08 -11.40 16 19 C -0.15 -3.05 5.16 36.01 0.19 -2.87 16 20 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 21 C -0.53 -15.34 9.50 30.94 0.29 -15.04 16 22 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 25 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.09 6.91 -51.93 -0.36 0.73 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.57 7.85 -51.93 -0.41 0.16 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.40 2.73 8.67 -40.82 -0.35 2.38 16 35 H 0.09 0.53 8.09 -51.93 -0.42 0.11 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.91 6.61 -51.93 -0.34 0.57 16 38 H 0.05 0.49 8.10 -51.93 -0.42 0.07 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 1.05 7.48 -51.93 -0.39 0.66 16 45 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 47 H 0.09 1.71 7.85 -51.92 -0.41 1.30 16 48 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 405.26 15.07 6.11 6.11 Total: -1.00 -35.38 405.26 -9.76 -45.15 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -8.11 Total: 1.31 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -0.65 Total: -6.19 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: -0.03 Total: -40.79 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.16 Total: -18.28 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.38 -9.76 -45.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001511218251.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.913 kcal (2) G-P(sol) polarization free energy of solvation -35.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds