Wall clock time and date at job start Sat Apr 11 2020 06:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50707 * 120.00002 * 2 1 4 4 C 1.52992 * 109.46857 * 124.99856 * 3 2 1 5 5 C 1.53004 * 109.47182 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47498 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99624 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00066 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99756 * 179.97438 * 8 6 5 10 10 H 1.08998 * 110.89067 * 328.89325 * 9 8 6 11 11 C 1.55147 * 111.00638 * 205.00083 * 9 8 6 12 12 C 1.54323 * 102.94784 * 206.42930 * 11 9 8 13 13 H 1.09002 * 109.88393 * 141.61091 * 12 11 9 14 14 C 1.53005 * 109.88106 * 262.62439 * 12 11 9 15 15 N 1.47027 * 107.26867 * 22.19206 * 12 11 9 16 16 C 1.34773 * 125.64711 * 181.03608 * 15 12 11 17 17 O 1.21282 * 120.00056 * 0.02562 * 16 15 12 18 18 C 1.50703 * 119.99998 * 179.97438 * 16 15 12 19 19 S 1.80999 * 109.47203 * 180.02562 * 18 16 15 20 20 C 1.76192 * 100.00090 * 180.02562 * 19 18 16 21 21 H 1.08011 * 119.99968 * 359.97438 * 20 19 18 22 22 C 1.38797 * 120.00507 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99331 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00416 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47512 * 59.99936 * 24 22 20 26 26 H 1.48502 * 109.46917 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46837 * 299.99856 * 24 22 20 28 28 C 1.47424 * 108.70068 * 1.06314 * 15 12 11 29 29 H 1.07998 * 119.99611 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.99732 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.00226 * 180.02562 * 2 1 3 32 32 H 1.09005 * 109.46883 * 4.99998 * 3 2 1 33 33 H 1.08994 * 109.47481 * 245.00278 * 3 2 1 34 34 H 1.09005 * 109.47258 * 60.00372 * 4 3 2 35 35 H 1.09002 * 109.47508 * 300.00157 * 4 3 2 36 36 H 1.08998 * 109.47222 * 60.00167 * 5 4 3 37 37 H 1.09002 * 109.46686 * 300.00243 * 5 4 3 38 38 H 0.96996 * 120.00360 * 0.02562 * 8 6 5 39 39 H 1.09004 * 110.72163 * 88.06544 * 11 9 8 40 40 H 1.09003 * 110.87386 * 324.86909 * 11 9 8 41 41 H 1.08994 * 109.47215 * 59.68571 * 14 12 11 42 42 H 1.09001 * 109.46642 * 179.68074 * 14 12 11 43 43 H 1.09002 * 109.46991 * 299.68093 * 14 12 11 44 44 H 1.08992 * 109.47116 * 300.00626 * 18 16 15 45 45 H 1.09004 * 109.46801 * 60.00288 * 18 16 15 46 46 H 0.97001 * 119.99151 * 179.97438 * 23 22 20 47 47 H 1.09000 * 110.36259 * 217.03254 * 28 15 12 48 48 H 1.09001 * 110.46290 * 94.75894 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7996 2.6584 1.1820 6 6 4.7570 2.6857 2.3455 7 8 4.8217 1.7382 3.0999 8 7 5.5419 3.7626 2.5472 9 6 6.4722 3.7893 3.6787 10 1 6.0790 3.2167 4.5187 11 6 6.7927 5.2474 4.1008 12 6 8.1902 5.1222 4.7432 13 1 8.7989 5.9867 4.4781 14 6 8.0571 5.0266 6.2644 15 7 8.8055 3.8962 4.2140 16 6 10.0225 3.4216 4.5461 17 8 10.7091 4.0204 5.3466 18 6 10.5295 2.1463 3.9235 19 16 12.1800 1.7753 4.5673 20 6 12.5191 0.2813 3.6970 21 1 11.7886 -0.1220 3.0113 22 6 13.7251 -0.3774 3.8926 23 7 14.6151 0.1138 4.7288 24 14 14.0843 -1.9617 2.9705 25 1 14.0503 -1.7024 1.5088 26 1 15.4285 -2.4635 3.3536 27 1 13.0595 -2.9792 3.3167 28 6 7.8711 3.2723 3.2595 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5399 0.9353 0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6213 1.4027 -0.9313 34 1 3.7400 0.5066 1.0920 35 1 2.4772 1.2356 2.1130 36 1 3.0945 3.4847 1.2719 37 1 4.3574 2.7563 0.2507 38 1 5.4904 4.5202 1.9437 39 1 6.0648 5.6072 4.8282 40 1 6.8250 5.9051 3.2322 41 1 7.4580 4.1534 6.5225 42 1 9.0471 4.9327 6.7105 43 1 7.5713 5.9256 6.6438 44 1 9.8521 1.3283 4.1680 45 1 10.5797 2.2653 2.8411 46 1 15.4578 -0.3468 4.8657 47 1 7.9143 2.1863 3.3413 48 1 8.1015 3.5848 2.2410 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001511218543.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:21 Heat of formation + Delta-G solvation = -67.546411 kcal Electronic energy + Delta-G solvation = -26547.005520 eV Core-core repulsion = 22728.034005 eV Total energy + Delta-G solvation = -3818.971514 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.59216 -39.55018 -37.43513 -36.34306 -34.51245 -32.80640 -32.40930 -32.20550 -30.10152 -28.72062 -27.49831 -25.99842 -25.46304 -23.43544 -22.20444 -21.10553 -20.69610 -20.17829 -19.06777 -17.73069 -17.49498 -16.90641 -16.40872 -16.12692 -15.48342 -15.28375 -15.19368 -14.78516 -14.47439 -14.39592 -14.01190 -13.85092 -13.81063 -13.51352 -13.24420 -13.08376 -12.77262 -12.60289 -12.54643 -12.20652 -12.09798 -11.94179 -11.77235 -11.60770 -11.34103 -11.30675 -11.11328 -11.02177 -11.01787 -10.85765 -10.74835 -10.14979 -9.81070 -9.71776 -9.58556 -9.25744 -9.03903 -8.53841 -8.22303 -6.48225 -6.19587 -3.90094 1.89188 2.31585 2.61984 3.00011 3.07320 3.25370 3.28063 3.31190 3.63740 4.10618 4.22632 4.32335 4.33154 4.39419 4.55818 4.65362 4.78706 4.83394 4.90370 5.01319 5.06335 5.08417 5.14922 5.15561 5.20879 5.31254 5.36613 5.38199 5.52052 5.53737 5.56060 5.61040 5.65789 5.72526 5.74220 5.91416 5.94438 6.01427 6.11564 6.16805 6.24770 6.28313 6.37688 6.53149 7.11806 7.61330 7.65086 7.89923 8.37263 8.56232 9.25618 10.87788 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008968 B = 0.002420 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.381570 B =11569.752713 C =14385.980466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C -0.095 4.095 4 C -0.102 4.102 5 C -0.140 4.140 6 C 0.512 3.488 7 O -0.532 6.532 8 N -0.723 5.723 9 C 0.132 3.868 10 H 0.108 0.892 11 C -0.134 4.134 12 C 0.139 3.861 13 H 0.078 0.922 14 C -0.166 4.166 15 N -0.621 5.621 16 C 0.552 3.448 17 O -0.511 6.511 18 C -0.148 4.148 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.092 3.908 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.402 0.598 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.269 0.731 47 H 0.083 0.917 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.709 9.937 -9.577 30.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.170 4.170 3 C -0.133 4.133 4 C -0.140 4.140 5 C -0.180 4.180 6 C 0.299 3.701 7 O -0.407 6.407 8 N -0.375 5.375 9 C 0.026 3.974 10 H 0.126 0.874 11 C -0.172 4.172 12 C 0.035 3.965 13 H 0.096 0.904 14 C -0.224 4.224 15 N -0.359 5.359 16 C 0.340 3.660 17 O -0.385 6.385 18 C -0.298 4.298 19 S 0.168 5.832 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.033 4.033 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.237 0.763 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.079 0.921 47 H 0.101 0.899 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -26.363 10.079 -7.716 29.260 hybrid contribution -0.590 -1.371 -1.926 2.436 sum -26.953 8.708 -9.642 29.921 Atomic orbital electron populations 1.23853 0.95985 1.01807 1.01818 1.22978 0.96046 0.98660 0.99273 1.20797 0.98160 0.95518 0.98781 1.21303 0.97809 0.96197 0.98658 1.21707 0.98161 1.00854 0.97302 1.20829 0.80763 0.82063 0.86489 1.90760 1.68059 1.34880 1.47042 1.45920 1.40676 1.20208 1.30723 1.22086 0.88544 0.96991 0.89741 0.87384 1.23008 0.96715 0.95793 1.01679 1.21424 0.92250 0.88346 0.94487 0.90432 1.22181 1.03859 1.01605 0.94732 1.48496 1.16728 1.25731 1.44963 1.20002 0.78784 0.85922 0.81257 1.90692 1.55161 1.59184 1.33453 1.23528 1.06092 0.96504 1.03724 1.85349 1.08557 1.31113 1.58215 1.22820 1.05588 1.09980 1.29940 0.91009 1.24989 0.95063 0.98153 0.95368 1.70013 1.07580 1.39037 1.33668 0.86225 0.77626 0.81896 0.79768 1.19951 1.20801 1.19914 1.22617 0.88035 0.99418 0.93259 0.88565 0.88681 0.87261 0.91499 0.90838 0.90797 0.91008 0.88825 0.88637 0.76307 0.89256 0.90031 0.92496 0.90436 0.91942 0.89283 0.89414 0.92149 0.89878 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.17 14.32 29.01 0.42 -0.76 16 2 C -0.15 -0.97 9.52 -36.02 -0.34 -1.31 16 3 C -0.10 -0.51 5.66 -27.88 -0.16 -0.67 16 4 C -0.10 -0.69 4.49 -26.73 -0.12 -0.81 16 5 C -0.14 -0.73 5.70 -27.88 -0.16 -0.89 16 6 C 0.51 4.48 7.83 -10.99 -0.09 4.39 16 7 O -0.53 -7.21 15.62 5.55 0.09 -7.12 16 8 N -0.72 -4.88 5.20 -51.73 -0.27 -5.15 16 9 C 0.13 1.20 3.42 -65.78 -0.23 0.98 16 10 H 0.11 1.21 7.54 -51.93 -0.39 0.82 16 11 C -0.13 -0.98 6.14 -24.90 -0.15 -1.14 16 12 C 0.14 1.59 3.49 -66.95 -0.23 1.36 16 13 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 14 C -0.17 -1.98 9.06 37.16 0.34 -1.64 16 15 N -0.62 -9.03 3.08 -163.01 -0.50 -9.54 16 16 C 0.55 10.80 7.65 -10.99 -0.08 10.72 16 17 O -0.51 -11.73 14.77 5.56 0.08 -11.65 16 18 C -0.15 -3.14 5.16 36.01 0.19 -2.96 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.53 9.50 30.94 0.29 -15.24 16 21 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.46 13.22 55.49 0.73 -25.72 16 24 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 28 C 0.09 1.07 6.39 -2.53 -0.02 1.06 16 29 H 0.10 0.51 8.06 -52.49 -0.42 0.09 16 30 H 0.09 0.48 7.84 -52.49 -0.41 0.07 16 31 H 0.11 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.07 0.30 7.79 -51.93 -0.40 -0.10 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 35 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.40 1.42 8.57 -40.82 -0.35 1.07 16 39 H 0.09 0.55 7.83 -51.93 -0.41 0.14 16 40 H 0.08 0.44 8.01 -51.93 -0.42 0.02 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 1.19 6.76 -51.93 -0.35 0.84 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.09 1.81 7.85 -51.92 -0.41 1.40 16 45 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 46 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 47 H 0.08 1.10 7.48 -51.93 -0.39 0.71 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 410.38 15.07 6.18 6.18 Total: -1.00 -36.72 410.38 -9.50 -46.22 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -8.14 Total: -1.24 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -0.44 Total: -4.88 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: -0.04 Total: -40.41 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.17 Total: -18.77 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.72 -9.50 -46.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001511218543.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.324 kcal (2) G-P(sol) polarization free energy of solvation -36.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds