Wall clock time and date at job start Sat Apr 11 2020 06:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00002 * 2 1 4 4 C 1.53000 * 109.46912 * 125.00530 * 3 2 1 5 5 C 1.53001 * 109.46886 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47291 * 179.97438 * 5 4 3 7 7 O 1.21288 * 120.00038 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00369 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00115 * 179.97438 * 8 6 5 10 10 H 1.09000 * 110.88235 * 31.12238 * 9 8 6 11 11 C 1.55159 * 111.00072 * 154.99996 * 9 8 6 12 12 C 1.54320 * 102.93848 * 153.57935 * 11 9 8 13 13 H 1.08999 * 109.88378 * 97.22507 * 12 11 9 14 14 C 1.53004 * 109.88176 * 218.38625 * 12 11 9 15 15 N 1.47020 * 107.27416 * 337.80468 * 12 11 9 16 16 C 1.34777 * 125.65421 * 178.89477 * 15 12 11 17 17 O 1.21288 * 119.99404 * 0.02562 * 16 15 12 18 18 C 1.50698 * 120.00471 * 179.97438 * 16 15 12 19 19 S 1.80997 * 109.47281 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99927 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00238 * 359.97438 * 20 19 18 22 22 C 1.38797 * 119.99641 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00544 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99699 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46953 * 60.00066 * 24 22 20 26 26 H 1.48504 * 109.46961 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47138 * 299.99872 * 24 22 20 28 28 C 1.47423 * 108.70012 * 358.94317 * 15 12 11 29 29 H 1.07999 * 119.99862 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.00097 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.00097 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47152 * 5.00302 * 3 2 1 33 33 H 1.09001 * 109.46980 * 245.00403 * 3 2 1 34 34 H 1.09001 * 109.47194 * 299.99742 * 4 3 2 35 35 H 1.08992 * 109.47399 * 59.99914 * 4 3 2 36 36 H 1.09001 * 109.47109 * 299.99380 * 5 4 3 37 37 H 1.09002 * 109.47508 * 59.99571 * 5 4 3 38 38 H 0.97003 * 119.99640 * 359.97438 * 8 6 5 39 39 H 1.09001 * 110.72072 * 271.93615 * 11 9 8 40 40 H 1.08988 * 110.72172 * 35.21402 * 11 9 8 41 41 H 1.09002 * 109.46748 * 60.00224 * 14 12 11 42 42 H 1.09002 * 109.46829 * 179.97438 * 14 12 11 43 43 H 1.08990 * 109.47174 * 300.00401 * 14 12 11 44 44 H 1.08996 * 109.47088 * 300.00785 * 18 16 15 45 45 H 1.09004 * 109.46982 * 60.00221 * 18 16 15 46 46 H 0.96998 * 120.00178 * 180.02562 * 23 22 20 47 47 H 1.09000 * 110.36854 * 265.28790 * 28 15 12 48 48 H 1.09007 * 110.36593 * 142.96568 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7997 2.6583 1.1819 6 6 4.7562 2.6861 2.3460 7 8 4.8199 1.7393 3.1014 8 7 5.5411 3.7630 2.5479 9 6 6.4706 3.7903 3.6799 10 1 6.8239 2.7867 3.9168 11 6 7.6597 4.7469 3.4002 12 6 8.0997 5.1745 4.8162 13 1 8.9407 4.5632 5.1434 14 6 8.4967 6.6521 4.8137 15 7 6.9522 4.9665 5.7114 16 6 6.9383 5.2015 7.0384 17 8 7.9332 5.6220 7.5901 18 6 5.6864 4.9430 7.8365 19 16 5.9832 5.3529 9.5742 20 6 4.4040 4.9668 10.2537 21 1 3.6164 4.5977 9.6137 22 6 4.1721 5.1382 11.6114 23 7 5.1319 5.5886 12.3915 24 14 2.4976 4.7295 12.3317 25 1 2.1930 3.2957 12.0938 26 1 2.5085 4.9970 13.7924 27 1 1.4606 5.5704 11.6817 28 6 5.8194 4.4571 4.9172 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6212 1.4026 -0.9314 34 1 2.4774 1.2355 2.1130 35 1 3.7400 0.5065 1.0920 36 1 4.3574 2.7562 0.2506 37 1 3.0945 3.4846 1.2718 38 1 5.4904 4.5201 1.9435 39 1 8.4656 4.2209 2.8883 40 1 7.3322 5.6101 2.8210 41 1 7.6442 7.2567 4.5041 42 1 8.8057 6.9469 5.8166 43 1 9.3223 6.8054 4.1189 44 1 4.8757 5.5612 7.4510 45 1 5.4127 3.8913 7.7525 46 1 4.9699 5.7079 13.3404 47 1 5.1724 5.2784 4.6090 48 1 5.2541 3.7223 5.4906 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001511218544.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:23 Heat of formation + Delta-G solvation = -67.820913 kcal Electronic energy + Delta-G solvation = -26523.702078 eV Core-core repulsion = 22704.718661 eV Total energy + Delta-G solvation = -3818.983418 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.57702 -39.54458 -37.42352 -36.33767 -34.52390 -32.80570 -32.40733 -32.18920 -30.21933 -28.70814 -27.50893 -25.97070 -25.45958 -23.35119 -22.06647 -21.33378 -20.67477 -20.17037 -18.95534 -17.66730 -17.51340 -16.76093 -16.66043 -16.33314 -15.48161 -15.43789 -14.88886 -14.78180 -14.60845 -14.26230 -13.98569 -13.89073 -13.75092 -13.60727 -13.14242 -13.06465 -12.73854 -12.60498 -12.56309 -12.18126 -12.03759 -11.98441 -11.88557 -11.69138 -11.30429 -11.17622 -11.11403 -11.02479 -11.01565 -10.97406 -10.74621 -10.15242 -9.80829 -9.70916 -9.57622 -9.26890 -9.03702 -8.53420 -8.22148 -6.48073 -6.19346 -3.89940 1.90348 2.31622 2.61996 2.99123 3.08548 3.25644 3.28336 3.31454 3.63960 4.11379 4.22833 4.31237 4.34060 4.39578 4.56399 4.63783 4.78991 4.83349 4.92810 4.99383 5.07064 5.09104 5.15496 5.16003 5.20305 5.30402 5.37085 5.38275 5.46579 5.54356 5.58499 5.60560 5.65544 5.69339 5.74736 5.91733 5.94822 6.01110 6.11651 6.16711 6.24945 6.25702 6.38720 6.51192 7.11764 7.61552 7.65283 7.89928 8.37495 8.56366 9.25837 10.88014 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008321 B = 0.002509 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3364.152393 B =11158.369497 C =14256.624183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C -0.095 4.095 4 C -0.102 4.102 5 C -0.140 4.140 6 C 0.512 3.488 7 O -0.532 6.532 8 N -0.723 5.723 9 C 0.131 3.869 10 H 0.108 0.892 11 C -0.133 4.133 12 C 0.138 3.862 13 H 0.078 0.922 14 C -0.162 4.162 15 N -0.621 5.621 16 C 0.552 3.448 17 O -0.512 6.512 18 C -0.148 4.148 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.092 3.908 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.402 0.598 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.069 0.931 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.172 -4.300 -30.553 30.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.171 4.171 3 C -0.132 4.132 4 C -0.140 4.140 5 C -0.180 4.180 6 C 0.299 3.701 7 O -0.407 6.407 8 N -0.375 5.375 9 C 0.025 3.975 10 H 0.126 0.874 11 C -0.171 4.171 12 C 0.034 3.966 13 H 0.096 0.904 14 C -0.220 4.220 15 N -0.359 5.359 16 C 0.340 3.660 17 O -0.385 6.385 18 C -0.298 4.298 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.033 4.033 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.237 0.763 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.587 -4.300 -28.885 29.209 hybrid contribution -2.355 -0.349 -0.489 2.430 sum -2.942 -4.649 -29.374 29.884 Atomic orbital electron populations 1.23871 0.96006 1.01888 1.01487 1.22950 0.96045 0.98566 0.99581 1.20795 0.98193 0.95611 0.98630 1.21302 0.97788 0.96034 0.98842 1.21707 0.98190 1.00996 0.97126 1.20832 0.80792 0.82042 0.86480 1.90760 1.67417 1.35349 1.47212 1.45916 1.41250 1.20166 1.30169 1.22096 0.88912 1.00855 0.85617 0.87369 1.23024 0.97995 0.99336 0.96764 1.21446 0.89822 0.97371 0.87977 0.90365 1.22141 1.01191 0.94964 1.03750 1.48504 1.13174 1.67431 1.06834 1.20004 0.89933 0.76525 0.79510 1.90696 1.35313 1.43849 1.68668 1.23526 0.97481 1.04809 1.04022 1.85350 1.19195 1.85963 0.92750 1.22819 0.98118 1.51250 0.96132 0.91006 1.24986 0.97985 0.94664 0.95911 1.70007 1.32198 1.42599 1.05515 0.86228 0.82424 0.79018 0.77863 1.19902 1.20804 1.19947 1.22608 0.89811 0.98440 0.92429 0.88553 0.88603 0.87351 0.91409 0.90965 0.90846 0.90969 0.88786 0.88681 0.76309 0.89403 0.89857 0.92597 0.90604 0.91940 0.89418 0.89279 0.92144 0.91260 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.22 14.32 29.01 0.42 -0.80 16 2 C -0.15 -0.98 9.52 -36.02 -0.34 -1.32 16 3 C -0.10 -0.51 5.66 -27.88 -0.16 -0.67 16 4 C -0.10 -0.69 4.49 -26.73 -0.12 -0.81 16 5 C -0.14 -0.73 5.70 -27.88 -0.16 -0.89 16 6 C 0.51 4.47 7.83 -10.99 -0.09 4.39 16 7 O -0.53 -7.20 15.62 5.55 0.09 -7.12 16 8 N -0.72 -4.87 5.20 -51.73 -0.27 -5.14 16 9 C 0.13 1.19 3.42 -65.78 -0.23 0.96 16 10 H 0.11 1.20 7.54 -51.93 -0.39 0.81 16 11 C -0.13 -0.97 6.12 -24.90 -0.15 -1.13 16 12 C 0.14 1.58 3.46 -66.95 -0.23 1.35 16 13 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 14 C -0.16 -1.84 9.10 37.16 0.34 -1.50 16 15 N -0.62 -9.04 3.06 -163.02 -0.50 -9.54 16 16 C 0.55 10.82 7.66 -10.99 -0.08 10.73 16 17 O -0.51 -11.77 14.91 5.55 0.08 -11.69 16 18 C -0.15 -3.15 5.16 36.00 0.19 -2.96 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.53 -15.55 9.50 30.94 0.29 -15.25 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 23 N -0.87 -26.49 13.22 55.49 0.73 -25.75 16 24 Si 0.92 21.78 29.55 -169.99 -5.02 16.75 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 28 C 0.09 1.08 6.38 -2.53 -0.02 1.06 16 29 H 0.10 0.53 8.06 -52.49 -0.42 0.11 16 30 H 0.10 0.54 7.84 -52.49 -0.41 0.13 16 31 H 0.11 0.66 8.06 -52.49 -0.42 0.23 16 32 H 0.07 0.33 7.79 -51.93 -0.40 -0.07 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 35 H 0.07 0.57 8.10 -51.93 -0.42 0.14 16 36 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.40 1.43 8.57 -40.82 -0.35 1.08 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.46 7.71 -51.94 -0.40 0.06 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.12 6.91 -51.93 -0.36 0.77 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 45 H 0.09 1.81 7.85 -51.91 -0.41 1.41 16 46 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.08 1.11 7.48 -51.92 -0.39 0.72 16 LS Contribution 410.66 15.07 6.19 6.19 Total: -1.00 -36.79 410.66 -9.50 -46.29 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -8.15 Total: -1.33 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -0.44 Total: -4.81 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: -0.03 Total: -40.44 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.17 Total: -18.81 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.79 -9.50 -46.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001511218544.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.532 kcal (2) G-P(sol) polarization free energy of solvation -36.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds