Wall clock time and date at job start Sat Apr 11 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 119.99963 * 2 1 4 4 C 1.52995 * 109.47846 * 124.99637 * 3 2 1 5 5 C 1.52990 * 109.47353 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47398 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99488 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00290 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27728 * 8 6 5 10 10 H 1.09004 * 110.64070 * 327.86302 * 9 8 6 11 11 C 1.55158 * 110.71885 * 204.72041 * 9 8 6 12 12 C 1.54907 * 101.58221 * 206.13123 * 11 9 8 13 13 H 1.09002 * 110.37099 * 278.17060 * 12 11 9 14 14 C 1.53003 * 110.36501 * 155.84640 * 12 11 9 15 15 N 1.47427 * 104.83020 * 37.01407 * 12 11 9 16 16 C 1.34778 * 125.64977 * 155.90728 * 15 12 11 17 17 O 1.21285 * 119.99609 * 359.97438 * 16 15 12 18 18 C 1.50693 * 120.00197 * 179.97438 * 16 15 12 19 19 S 1.80997 * 109.47267 * 179.97438 * 18 16 15 20 20 C 1.76201 * 100.00140 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00042 * 0.02562 * 20 19 18 22 22 C 1.38803 * 120.00067 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00003 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99849 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47132 * 59.99766 * 24 22 20 26 26 H 1.48508 * 109.46987 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47366 * 300.00048 * 24 22 20 28 28 C 1.47024 * 108.70317 * 335.86680 * 15 12 11 29 29 H 1.08002 * 119.99991 * 180.02562 * 1 2 3 30 30 H 1.07995 * 120.00310 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.00122 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.46772 * 4.98803 * 3 2 1 33 33 H 1.09003 * 109.46720 * 245.00028 * 3 2 1 34 34 H 1.08998 * 109.47142 * 59.99444 * 4 3 2 35 35 H 1.09011 * 109.46657 * 300.00002 * 4 3 2 36 36 H 1.08998 * 109.47508 * 59.99597 * 5 4 3 37 37 H 1.09002 * 109.47337 * 299.99883 * 5 4 3 38 38 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 39 39 H 1.08999 * 111.00567 * 324.21108 * 11 9 8 40 40 H 1.09003 * 111.00279 * 88.02116 * 11 9 8 41 41 H 1.09002 * 109.47085 * 60.00201 * 14 12 11 42 42 H 1.09002 * 109.47024 * 179.97438 * 14 12 11 43 43 H 1.08999 * 109.47661 * 300.00660 * 14 12 11 44 44 H 1.09003 * 109.47256 * 300.00315 * 18 16 15 45 45 H 1.09005 * 109.46863 * 60.00211 * 18 16 15 46 46 H 0.96998 * 120.00297 * 180.02562 * 23 22 20 47 47 H 1.08995 * 109.88147 * 241.64761 * 28 15 12 48 48 H 1.08995 * 109.88323 * 120.48076 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3333 1.1816 5 6 3.7994 2.6586 1.1818 6 6 4.7559 2.6866 2.3461 7 8 4.8194 1.7399 3.1015 8 7 5.5399 3.7641 2.5484 9 6 6.4740 3.7887 3.6767 10 1 6.0726 3.2270 4.5202 11 6 6.7945 5.2489 4.0922 12 6 8.1958 5.0894 4.7330 13 1 8.1049 4.7459 5.7634 14 6 8.9605 6.4135 4.6773 15 7 8.8732 4.0707 3.9103 16 6 10.2069 3.9258 3.7803 17 8 10.9583 4.6731 4.3701 18 6 10.7642 2.8353 2.9022 19 16 12.5728 2.9003 2.9341 20 6 12.9463 1.5579 1.8556 21 1 12.1467 0.9870 1.4070 22 6 14.2681 1.2341 1.5825 23 7 15.2425 1.9302 2.1288 24 14 14.6639 -0.1895 0.4397 25 1 14.0745 0.0711 -0.8982 26 1 16.1371 -0.3274 0.3128 27 1 14.0949 -1.4434 0.9954 28 6 7.8530 3.2385 3.2559 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9352 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1316 0.0894 33 1 2.6212 1.4026 -0.9314 34 1 3.7399 0.5068 1.0922 35 1 2.4770 1.2359 2.1130 36 1 3.0942 3.4848 1.2715 37 1 4.3572 2.7565 0.2505 38 1 5.4887 4.5213 1.9444 39 1 6.8352 5.9029 3.2212 40 1 6.0708 5.6157 4.8201 41 1 8.4053 7.1769 5.2224 42 1 9.9428 6.2851 5.1318 43 1 9.0778 6.7220 3.6384 44 1 10.4285 1.8656 3.2698 45 1 10.4139 2.9775 1.8798 46 1 16.1662 1.7042 1.9376 47 1 7.9543 2.2033 3.5818 48 1 7.9624 3.3008 2.1733 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001511218546.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:26 Heat of formation + Delta-G solvation = -65.768947 kcal Electronic energy + Delta-G solvation = -26523.106168 eV Core-core repulsion = 22704.211730 eV Total energy + Delta-G solvation = -3818.894438 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.59680 -39.56513 -37.40128 -36.33783 -34.49186 -32.81176 -32.42341 -32.23705 -30.22417 -28.68806 -27.51099 -25.88041 -25.46489 -23.37295 -22.10662 -21.31707 -20.67066 -20.17694 -18.94414 -17.62010 -17.46698 -16.88292 -16.59987 -16.28200 -15.72105 -15.34005 -15.06023 -14.79748 -14.48870 -14.31438 -14.02158 -13.89753 -13.66016 -13.59892 -13.12871 -12.99063 -12.77030 -12.60674 -12.29630 -12.17087 -12.09586 -11.99643 -11.92166 -11.66956 -11.31372 -11.24974 -11.11480 -11.05740 -11.03190 -10.99670 -10.76072 -10.15108 -9.81767 -9.71929 -9.56452 -9.13071 -9.05221 -8.52158 -8.23703 -6.49542 -6.20907 -3.91468 1.88980 2.30924 2.64695 2.98141 3.07060 3.24135 3.26878 3.29969 3.62247 4.10788 4.21350 4.31211 4.33010 4.38119 4.55902 4.68938 4.78834 4.83903 4.91258 4.99703 5.07947 5.09092 5.13904 5.14679 5.21868 5.32728 5.37245 5.40178 5.49969 5.53266 5.60946 5.63209 5.67778 5.68729 5.74041 5.90210 5.94053 6.08495 6.13143 6.15232 6.24471 6.29442 6.37516 6.61114 7.11799 7.60001 7.65871 7.89031 8.35853 8.56777 9.24278 10.86447 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008983 B = 0.002401 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3116.258324 B =11660.757826 C =14507.840797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.096 4.096 4 C -0.101 4.101 5 C -0.141 4.141 6 C 0.513 3.487 7 O -0.534 6.534 8 N -0.723 5.723 9 C 0.134 3.866 10 H 0.108 0.892 11 C -0.135 4.135 12 C 0.138 3.862 13 H 0.076 0.924 14 C -0.162 4.162 15 N -0.623 5.623 16 C 0.552 3.448 17 O -0.510 6.510 18 C -0.148 4.148 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.092 3.908 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.403 0.597 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.089 0.911 43 H 0.055 0.945 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.269 0.731 47 H 0.075 0.925 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.200 5.127 -2.299 29.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.169 4.169 3 C -0.133 4.133 4 C -0.139 4.139 5 C -0.181 4.181 6 C 0.300 3.700 7 O -0.410 6.410 8 N -0.376 5.376 9 C 0.028 3.972 10 H 0.126 0.874 11 C -0.174 4.174 12 C 0.034 3.966 13 H 0.094 0.906 14 C -0.220 4.220 15 N -0.361 5.361 16 C 0.341 3.659 17 O -0.384 6.384 18 C -0.299 4.299 19 S 0.168 5.832 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.033 4.033 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.238 0.762 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.079 0.921 47 H 0.093 0.907 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -27.742 5.558 -0.859 28.307 hybrid contribution -0.682 -1.521 -1.834 2.478 sum -28.424 4.037 -2.693 28.836 Atomic orbital electron populations 1.23851 0.95985 1.01806 1.01840 1.22973 0.96041 0.98654 0.99257 1.20801 0.98173 0.95514 0.98819 1.21294 0.97784 0.96189 0.98626 1.21713 0.98199 1.00846 0.97352 1.20825 0.80737 0.82012 0.86459 1.90741 1.68203 1.34991 1.47091 1.46004 1.40486 1.20202 1.30877 1.21947 0.88326 0.97147 0.89763 0.87441 1.23182 0.96872 0.95399 1.01934 1.21795 0.90303 0.89708 0.94762 0.90583 1.22135 1.02563 0.94619 1.02655 1.48537 1.04926 1.33578 1.49069 1.19971 0.79567 0.84982 0.81418 1.90656 1.56597 1.44642 1.46531 1.23529 1.06313 0.99081 1.00932 1.85344 0.90905 1.43991 1.62976 1.22821 0.94904 1.18004 1.32644 0.91030 1.24985 0.95164 0.97151 0.96251 1.70003 0.99719 1.38779 1.41780 0.86229 0.77389 0.81459 0.80461 1.19959 1.20791 1.19914 1.22362 0.87069 0.95609 0.98215 0.88574 0.88676 0.87276 0.91486 0.90803 0.90827 0.91038 0.88811 0.88590 0.76227 0.89872 0.89273 0.92360 0.89175 0.92548 0.89357 0.89501 0.92134 0.90694 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.17 14.32 29.02 0.42 -0.75 16 2 C -0.15 -0.96 9.52 -36.02 -0.34 -1.31 16 3 C -0.10 -0.52 5.66 -27.88 -0.16 -0.68 16 4 C -0.10 -0.69 4.48 -26.74 -0.12 -0.81 16 5 C -0.14 -0.76 5.70 -27.89 -0.16 -0.92 16 6 C 0.51 4.48 7.83 -10.98 -0.09 4.40 16 7 O -0.53 -7.03 15.63 5.55 0.09 -6.94 16 8 N -0.72 -5.06 5.10 -52.03 -0.27 -5.32 16 9 C 0.13 1.19 3.32 -66.10 -0.22 0.97 16 10 H 0.11 1.08 7.55 -51.93 -0.39 0.69 16 11 C -0.14 -1.03 6.13 -24.58 -0.15 -1.18 16 12 C 0.14 1.57 3.77 -66.42 -0.25 1.32 16 13 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 14 C -0.16 -1.97 8.59 37.16 0.32 -1.65 16 15 N -0.62 -8.96 3.24 -163.05 -0.53 -9.49 16 16 C 0.55 10.62 7.65 -10.99 -0.08 10.54 16 17 O -0.51 -11.41 13.58 5.55 0.08 -11.33 16 18 C -0.15 -3.11 5.35 36.00 0.19 -2.91 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 20 C -0.54 -15.43 9.50 30.94 0.29 -15.14 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 24 Si 0.92 21.62 29.55 -169.99 -5.02 16.59 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 28 C 0.09 1.09 6.24 -3.06 -0.02 1.07 16 29 H 0.10 0.50 8.06 -52.49 -0.42 0.08 16 30 H 0.09 0.49 7.84 -52.49 -0.41 0.07 16 31 H 0.11 0.68 8.06 -52.49 -0.42 0.26 16 32 H 0.07 0.31 7.79 -51.93 -0.40 -0.10 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.07 0.58 8.10 -51.92 -0.42 0.16 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.40 1.70 8.56 -40.82 -0.35 1.35 16 39 H 0.08 0.56 7.92 -51.93 -0.41 0.15 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 1.41 6.10 -51.93 -0.32 1.09 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 45 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 46 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16 47 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 48 H 0.07 0.82 8.03 -51.93 -0.42 0.41 16 LS Contribution 409.41 15.07 6.17 6.17 Total: -1.00 -36.00 409.41 -9.59 -45.59 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -8.16 Total: -0.86 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -0.46 Total: -5.03 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: -0.06 Total: -40.37 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: 0.16 Total: -18.27 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.00 -9.59 -45.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001511218546.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.179 kcal (2) G-P(sol) polarization free energy of solvation -36.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds