Wall clock time and date at job start Sat Apr 11 2020 06:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 120.00211 * 2 1 4 4 C 1.53004 * 109.47251 * 124.99478 * 3 2 1 5 5 C 1.53001 * 109.46884 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46642 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00246 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99958 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00348 * 180.02562 * 8 6 5 10 10 H 1.08995 * 110.88707 * 31.11939 * 9 8 6 11 11 C 1.55154 * 111.00707 * 155.00232 * 9 8 6 12 12 C 1.54329 * 102.94505 * 82.57214 * 11 9 8 13 13 H 1.09001 * 109.87996 * 262.77473 * 12 11 9 14 14 C 1.52998 * 110.00982 * 141.68527 * 12 11 9 15 15 N 1.47020 * 107.26900 * 22.19159 * 12 11 9 16 16 C 1.34771 * 125.64552 * 181.02490 * 15 12 11 17 17 O 1.21289 * 120.00201 * 359.97438 * 16 15 12 18 18 C 1.50704 * 120.00220 * 179.97438 * 16 15 12 19 19 S 1.80998 * 109.47205 * 179.97438 * 18 16 15 20 20 C 1.76204 * 99.99645 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00111 * 0.02562 * 20 19 18 22 22 C 1.38802 * 119.99720 * 179.97438 * 20 19 18 23 23 N 1.31632 * 120.00093 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00020 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 90.00077 * 24 22 20 26 26 H 1.48503 * 109.47261 * 330.00257 * 24 22 20 27 27 H 1.48500 * 109.47454 * 210.00251 * 24 22 20 28 28 C 1.47427 * 108.70456 * 1.29044 * 15 12 11 29 29 H 1.08003 * 119.99463 * 359.97438 * 1 2 3 30 30 H 1.07994 * 120.00309 * 179.97438 * 1 2 3 31 31 H 1.07997 * 119.99927 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.46889 * 4.99671 * 3 2 1 33 33 H 1.08993 * 109.47508 * 244.99999 * 3 2 1 34 34 H 1.09002 * 109.46525 * 60.00437 * 4 3 2 35 35 H 1.08992 * 109.47370 * 300.00109 * 4 3 2 36 36 H 1.09002 * 109.47084 * 60.00900 * 5 4 3 37 37 H 1.08992 * 109.47305 * 300.00269 * 5 4 3 38 38 H 0.97003 * 119.99652 * 0.02562 * 8 6 5 39 39 H 1.08996 * 110.72185 * 324.20601 * 11 9 8 40 40 H 1.09004 * 110.87292 * 201.00293 * 11 9 8 41 41 H 1.08995 * 109.47005 * 300.65802 * 14 12 11 42 42 H 1.08994 * 109.47263 * 60.66336 * 14 12 11 43 43 H 1.09004 * 109.46646 * 180.65702 * 14 12 11 44 44 H 1.09004 * 109.46909 * 59.99989 * 18 16 15 45 45 H 1.08994 * 109.46860 * 300.00327 * 18 16 15 46 46 H 0.96993 * 120.00092 * 359.97438 * 23 22 20 47 47 H 1.08990 * 110.36345 * 94.48195 * 28 15 12 48 48 H 1.09003 * 110.36400 * 216.80717 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3331 1.1817 5 6 3.8005 2.6578 1.1813 6 6 4.7578 2.6851 2.3448 7 8 4.8219 1.7381 3.0998 8 7 5.5428 3.7620 2.5465 9 6 6.4738 3.7884 3.6773 10 1 6.8275 2.7847 3.9130 11 6 7.6624 4.7454 3.3969 12 6 7.0863 6.1291 3.7644 13 1 6.7380 6.6364 2.8647 14 6 8.1568 6.9748 4.4570 15 7 5.9580 5.9031 4.6795 16 6 5.1762 6.8618 5.2143 17 8 5.3797 8.0279 4.9496 18 6 4.0492 6.4852 6.1411 19 16 3.1923 7.9825 6.6887 20 6 1.9620 7.2680 7.7282 21 1 1.9197 6.1965 7.8571 22 6 1.0478 8.0823 8.3822 23 7 1.0997 9.3882 8.2255 24 14 -0.2561 7.3250 9.4848 25 1 0.2671 7.2210 10.8708 26 1 -0.6024 5.9706 8.9837 27 1 -1.4695 8.1810 9.4767 28 6 5.8275 4.4545 4.9204 29 1 -0.5399 0.9354 0.0004 30 1 -0.5400 -0.9352 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6214 1.4026 -0.9313 34 1 3.7400 0.5065 1.0921 35 1 2.4773 1.2356 2.1130 36 1 3.0959 3.4847 1.2706 37 1 4.3583 2.7549 0.2500 38 1 5.4913 4.5196 1.9429 39 1 7.9444 4.7121 2.3446 40 1 8.5150 4.5019 4.0310 41 1 8.4947 6.4654 5.3593 42 1 9.0008 7.1165 3.7820 43 1 7.7374 7.9452 4.7229 44 1 4.4514 5.9598 7.0074 45 1 3.3483 5.8364 5.6159 46 1 1.7769 9.7815 7.6533 47 1 6.3624 4.1710 5.8267 48 1 4.7765 4.1758 4.9962 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001511218547.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:29 Heat of formation + Delta-G solvation = -74.337438 kcal Electronic energy + Delta-G solvation = -26989.166854 eV Core-core repulsion = 23169.900859 eV Total energy + Delta-G solvation = -3819.265995 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.69237 -39.50572 -37.51708 -36.26291 -34.29085 -32.73354 -32.53522 -32.28097 -30.33708 -28.86035 -27.45827 -26.09107 -24.85855 -23.26366 -22.36823 -21.11198 -20.59804 -20.10365 -19.06553 -18.19612 -17.39402 -17.17081 -16.55759 -16.28774 -15.51141 -15.44908 -15.05646 -14.63889 -14.48390 -14.11645 -13.90734 -13.83312 -13.76757 -13.74412 -13.20008 -12.93284 -12.68581 -12.56296 -12.37201 -12.33986 -12.05082 -12.04228 -11.89414 -11.76839 -11.71037 -11.46465 -11.22530 -11.03650 -10.96456 -10.90910 -10.19001 -10.10768 -9.64521 -9.62731 -9.56748 -9.38278 -9.01775 -8.58790 -8.23511 -6.68591 -6.63021 -4.00994 1.97478 2.36540 2.75379 2.82434 2.94551 3.32661 3.38923 3.43704 3.56541 4.07182 4.20721 4.25523 4.40437 4.42471 4.61198 4.64167 4.86015 4.86408 4.92330 4.94544 5.11104 5.15404 5.18484 5.21758 5.23014 5.29045 5.34577 5.40374 5.44065 5.46616 5.50470 5.55240 5.59699 5.62857 5.76479 5.82463 5.91905 6.00601 6.00973 6.15699 6.19217 6.32696 6.42659 6.46117 7.17308 7.54859 7.92485 7.93832 8.43828 8.49570 9.26225 10.81015 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007072 B = 0.003096 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3958.566322 B = 9041.839159 C =12284.013513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C -0.096 4.096 4 C -0.100 4.100 5 C -0.142 4.142 6 C 0.515 3.485 7 O -0.538 6.538 8 N -0.721 5.721 9 C 0.131 3.869 10 H 0.113 0.887 11 C -0.134 4.134 12 C 0.134 3.866 13 H 0.074 0.926 14 C -0.164 4.164 15 N -0.620 5.620 16 C 0.549 3.451 17 O -0.514 6.514 18 C -0.124 4.124 19 S -0.116 6.116 20 C -0.606 4.606 21 H 0.066 0.934 22 C 0.036 3.964 23 N -0.885 5.885 24 Si 1.086 2.914 25 H -0.284 1.284 26 H -0.287 1.287 27 H -0.279 1.279 28 C 0.089 3.911 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.402 0.598 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.278 0.722 47 H 0.079 0.921 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.934 -16.912 -17.777 26.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.172 4.172 3 C -0.133 4.133 4 C -0.138 4.138 5 C -0.182 4.182 6 C 0.302 3.698 7 O -0.414 6.414 8 N -0.373 5.373 9 C 0.025 3.975 10 H 0.131 0.869 11 C -0.173 4.173 12 C 0.030 3.970 13 H 0.092 0.908 14 C -0.222 4.222 15 N -0.358 5.358 16 C 0.338 3.662 17 O -0.388 6.388 18 C -0.275 4.275 19 S 0.110 5.890 20 C -0.754 4.754 21 H 0.084 0.916 22 C -0.175 4.175 23 N -0.519 5.519 24 Si 0.912 3.088 25 H -0.210 1.210 26 H -0.213 1.213 27 H -0.205 1.205 28 C -0.036 4.036 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.237 0.763 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.109 0.891 45 H 0.107 0.893 46 H 0.090 0.910 47 H 0.097 0.903 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.950 -15.410 -16.611 24.747 hybrid contribution 0.963 -1.535 -0.818 1.988 sum 10.913 -16.945 -17.429 26.646 Atomic orbital electron populations 1.23887 0.96017 1.01934 1.01333 1.22935 0.96035 0.98485 0.99734 1.20800 0.98261 0.95684 0.98582 1.21284 0.97706 0.95892 0.98869 1.21722 0.98279 1.01123 0.97118 1.20790 0.80649 0.81885 0.86432 1.90719 1.67708 1.35544 1.47468 1.45949 1.41041 1.19975 1.30337 1.22080 0.89014 1.00368 0.85989 0.86945 1.23080 0.97499 0.93423 1.03251 1.21506 0.86941 0.95487 0.93019 0.90818 1.22141 0.97822 1.01668 1.00530 1.48576 1.32136 1.06502 1.48598 1.19955 0.81787 0.84453 0.80022 1.90696 1.70291 1.17884 1.59967 1.23298 0.98197 1.05591 1.00463 1.84776 1.37270 1.06541 1.60385 1.23725 1.19348 0.97051 1.35309 0.91610 1.26055 0.99090 0.94722 0.97613 1.70771 1.34717 1.10554 1.35853 0.83299 0.75312 0.74790 0.75374 1.21018 1.21258 1.20477 1.22799 1.02520 0.80524 0.97710 0.88513 0.88573 0.87425 0.91293 0.90983 0.91084 0.90886 0.88570 0.88814 0.76313 0.89376 0.88748 0.92453 0.91918 0.90755 0.89140 0.89263 0.90983 0.90280 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.43 14.32 29.01 0.42 -1.02 16 2 C -0.15 -1.14 9.52 -36.03 -0.34 -1.48 16 3 C -0.10 -0.65 5.66 -27.88 -0.16 -0.81 16 4 C -0.10 -0.80 4.49 -26.73 -0.12 -0.92 16 5 C -0.14 -1.00 5.70 -27.88 -0.16 -1.16 16 6 C 0.52 5.06 7.83 -10.99 -0.09 4.97 16 7 O -0.54 -7.30 15.62 5.56 0.09 -7.21 16 8 N -0.72 -5.93 5.20 -51.62 -0.27 -6.19 16 9 C 0.13 1.12 3.43 -65.66 -0.23 0.90 16 10 H 0.11 0.98 7.54 -51.93 -0.39 0.59 16 11 C -0.13 -0.92 6.08 -24.90 -0.15 -1.07 16 12 C 0.13 1.41 3.45 -66.95 -0.23 1.18 16 13 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 14 C -0.16 -1.80 9.11 37.16 0.34 -1.46 16 15 N -0.62 -8.44 3.06 -162.87 -0.50 -8.94 16 16 C 0.55 10.33 7.66 -10.99 -0.08 10.25 16 17 O -0.51 -11.43 14.89 5.55 0.08 -11.34 16 18 C -0.12 -2.60 5.16 36.01 0.19 -2.41 16 19 S -0.12 -3.15 19.60 -107.50 -2.11 -5.26 16 20 C -0.61 -17.68 9.50 30.94 0.29 -17.38 16 21 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 22 C 0.04 1.04 5.49 -17.43 -0.10 0.95 16 23 N -0.88 -27.68 13.67 55.49 0.76 -26.92 16 24 Si 1.09 25.27 29.92 -169.99 -5.09 20.18 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 C 0.09 1.00 6.41 -2.41 -0.02 0.98 16 29 H 0.10 0.68 7.84 -52.48 -0.41 0.27 16 30 H 0.10 0.62 8.06 -52.49 -0.42 0.20 16 31 H 0.11 0.73 8.06 -52.49 -0.42 0.30 16 32 H 0.07 0.46 7.79 -51.93 -0.40 0.06 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 35 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.40 2.64 8.67 -40.82 -0.35 2.29 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.56 7.85 -51.93 -0.41 0.15 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 1.08 6.87 -51.93 -0.36 0.72 16 44 H 0.09 1.80 8.14 -51.91 -0.42 1.38 16 45 H 0.09 1.78 7.85 -51.92 -0.41 1.38 16 46 H 0.28 8.86 7.12 -40.82 -0.29 8.57 16 47 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.08 1.05 7.48 -51.93 -0.39 0.66 16 LS Contribution 409.48 15.07 6.17 6.17 Total: -1.00 -36.60 409.48 -9.41 -46.01 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -8.11 Total: 1.99 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -0.43 Total: -8.48 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: -0.01 Total: -42.05 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.17 Total: -18.56 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -5.09 Total: 20.18 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.11 Total: -5.26 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.60 -9.41 -46.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001511218547.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.329 kcal (2) G-P(sol) polarization free energy of solvation -36.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds