Wall clock time and date at job start Sat Apr 11 2020 06:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00141 * 2 1 4 4 C 1.53006 * 109.46866 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47265 * 120.00002 * 3 2 1 6 6 C 1.50698 * 109.46911 * 240.00230 * 3 2 1 7 7 O 1.21273 * 120.00521 * 359.97438 * 6 3 2 8 8 N 1.34786 * 119.99672 * 179.97438 * 6 3 2 9 9 C 1.46499 * 119.99820 * 179.97438 * 8 6 3 10 10 C 1.53002 * 109.46799 * 180.02562 * 9 8 6 11 11 H 1.09004 * 112.84851 * 316.19604 * 10 9 8 12 12 C 1.53771 * 113.61699 * 87.50654 * 10 9 8 13 13 C 1.53779 * 87.08233 * 139.97773 * 12 10 9 14 14 H 1.08998 * 113.61541 * 89.12047 * 13 12 10 15 15 N 1.46505 * 113.68773 * 220.00781 * 13 12 10 16 16 C 1.34777 * 119.99816 * 252.53485 * 15 13 12 17 17 O 1.21285 * 120.00022 * 0.02562 * 16 15 13 18 18 C 1.50702 * 119.99804 * 180.02562 * 16 15 13 19 19 S 1.80997 * 109.46990 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99977 * 180.02562 * 19 18 16 21 21 H 1.07993 * 119.99788 * 359.97438 * 20 19 18 22 22 C 1.38804 * 119.99759 * 179.97438 * 20 19 18 23 23 N 1.31636 * 120.00123 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99768 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46820 * 60.00196 * 24 22 20 26 26 H 1.48500 * 109.47038 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46850 * 300.00002 * 24 22 20 28 28 C 1.53771 * 87.08054 * 334.56533 * 13 12 10 29 29 H 1.08007 * 120.00349 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.00048 * 359.97438 * 1 2 3 31 31 H 1.08002 * 119.99525 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47002 * 179.97438 * 4 3 2 33 33 H 1.08993 * 109.46955 * 300.00219 * 4 3 2 34 34 H 1.09000 * 109.47050 * 60.00048 * 4 3 2 35 35 H 1.09000 * 109.47140 * 300.00252 * 5 3 2 36 36 H 1.09001 * 109.47230 * 59.99396 * 5 3 2 37 37 H 1.09001 * 109.47375 * 180.02562 * 5 3 2 38 38 H 0.96999 * 119.99591 * 359.97438 * 8 6 3 39 39 H 1.08992 * 109.47397 * 299.99990 * 9 8 6 40 40 H 1.08996 * 109.46733 * 60.00178 * 9 8 6 41 41 H 1.09002 * 113.61651 * 254.53062 * 12 10 9 42 42 H 1.09001 * 113.61431 * 25.42625 * 12 10 9 43 43 H 0.96994 * 120.00153 * 72.54056 * 15 13 12 44 44 H 1.08993 * 109.46900 * 300.00080 * 18 16 15 45 45 H 1.08999 * 109.46950 * 60.00635 * 18 16 15 46 46 H 0.97000 * 119.99168 * 179.97438 * 23 22 20 47 47 H 1.09000 * 113.61894 * 270.88034 * 28 13 12 48 48 H 1.09006 * 113.68739 * 139.98786 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4680 0.0006 5 6 2.9431 1.3861 1.2492 6 6 2.9298 1.3849 -1.2305 7 8 2.9353 0.4718 -2.0286 8 7 3.6987 2.4711 -1.4440 9 6 4.5413 2.5485 -2.6399 10 6 5.3062 3.8736 -2.6399 11 1 4.6823 4.7225 -2.3601 12 6 6.6431 3.8131 -1.8826 13 6 7.2295 4.6827 -3.0072 14 1 7.1326 5.7533 -2.8270 15 7 8.5842 4.2934 -3.4067 16 6 9.6348 5.0673 -3.0694 17 8 9.4588 6.0857 -2.4348 18 6 11.0283 4.6671 -3.4809 19 16 12.2113 5.8995 -2.8828 20 6 13.7120 5.2018 -3.4876 21 1 13.6916 4.2758 -4.0429 22 6 14.9203 5.8423 -3.2501 23 7 14.9451 6.9708 -2.5727 24 14 16.5114 5.1023 -3.8907 25 1 16.4469 4.9950 -5.3703 26 1 17.6519 5.9721 -3.5062 27 1 16.7002 3.7512 -3.3041 28 6 6.1303 4.1091 -3.9168 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 1.6142 3.4120 0.0011 33 1 0.4422 2.4104 -0.8890 34 1 0.4429 2.4101 0.8909 35 1 2.3165 1.3284 2.1392 36 1 3.6514 0.5576 1.2493 37 1 3.4878 2.3303 1.2495 38 1 3.6940 3.2016 -0.8058 39 1 5.2499 1.7204 -2.6393 40 1 3.9149 2.4901 -3.5300 41 1 6.6188 4.3110 -0.9132 42 1 7.0731 2.8127 -1.8349 43 1 8.7250 3.4787 -3.9140 44 1 11.2687 3.6947 -3.0512 45 1 11.0832 4.6078 -4.5679 46 1 15.7896 7.4181 -2.4066 47 1 6.4200 3.1895 -4.4253 48 1 5.6910 4.8449 -4.5904 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001514895936.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:36 Heat of formation + Delta-G solvation = -47.334846 kcal Electronic energy + Delta-G solvation = -26024.243616 eV Core-core repulsion = 22206.148541 eV Total energy + Delta-G solvation = -3818.095075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.74592 -39.96124 -38.27006 -36.73748 -35.03739 -33.18541 -32.43419 -31.35411 -29.44407 -27.96656 -27.71140 -26.00145 -25.49866 -24.45426 -22.74607 -21.28932 -20.42585 -20.03520 -18.85896 -17.81225 -17.48640 -16.72198 -16.44152 -16.10659 -15.86908 -15.56265 -15.06420 -14.94470 -14.81069 -14.52670 -14.39690 -14.03257 -13.65736 -13.24333 -12.97273 -12.87505 -12.77901 -12.69986 -12.64140 -12.47406 -12.38767 -12.28649 -11.85777 -11.69515 -11.49343 -11.21480 -11.05961 -11.04555 -10.96788 -10.78298 -10.66150 -10.16800 -9.82976 -9.73958 -9.42633 -9.39111 -9.06979 -8.87788 -8.25397 -6.51080 -6.22386 -3.93128 1.82158 2.29411 2.84883 3.04132 3.04619 3.23079 3.27242 3.31207 3.71113 4.06406 4.15438 4.18510 4.20007 4.31383 4.42330 4.45177 4.58457 4.63679 4.85424 4.93298 4.99506 5.08547 5.12779 5.14832 5.19252 5.20911 5.24455 5.35420 5.42759 5.45388 5.47561 5.53637 5.62095 5.66295 5.70015 5.75366 5.76845 5.87932 6.03349 6.12662 6.15815 6.19654 6.32262 6.64671 7.10810 7.58546 7.69664 7.86014 8.34260 8.59113 9.22888 10.84968 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027565 B = 0.001536 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.549126 B =18220.198509 C =18358.069205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.124 4.124 3 C -0.056 4.056 4 C -0.144 4.144 5 C -0.138 4.138 6 C 0.525 3.475 7 O -0.536 6.536 8 N -0.727 5.727 9 C 0.132 3.868 10 C -0.123 4.123 11 H 0.100 0.900 12 C -0.148 4.148 13 C 0.127 3.873 14 H 0.115 0.885 15 N -0.729 5.729 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.155 4.155 19 S -0.060 6.060 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C -0.136 4.136 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.401 0.599 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.399 0.601 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.269 0.731 47 H 0.089 0.911 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.328 -10.867 3.985 31.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.143 4.143 3 C -0.060 4.060 4 C -0.201 4.201 5 C -0.195 4.195 6 C 0.310 3.690 7 O -0.412 6.412 8 N -0.379 5.379 9 C 0.008 3.992 10 C -0.142 4.142 11 H 0.118 0.882 12 C -0.187 4.187 13 C 0.021 3.979 14 H 0.133 0.867 15 N -0.381 5.381 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.175 4.175 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.132 0.868 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.235 0.765 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.233 0.767 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.108 0.892 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -29.468 -9.658 4.525 31.339 hybrid contribution 1.333 -1.760 -1.121 2.477 sum -28.135 -11.418 3.404 30.554 Atomic orbital electron populations 1.23974 0.95859 1.02293 1.00922 1.22496 0.95638 0.96607 0.99520 1.19918 0.95748 0.96074 0.94228 1.21960 0.98795 0.96235 1.03148 1.21827 0.99274 1.02748 0.95684 1.20442 0.79695 0.81826 0.87007 1.90707 1.65872 1.37754 1.46890 1.46016 1.44975 1.21044 1.25831 1.21364 0.93210 0.97042 0.87564 1.22625 0.95670 0.97427 0.98525 0.88205 1.23596 0.94727 1.01334 0.99023 1.22348 0.80609 1.00302 0.94597 0.86674 1.45988 1.05878 1.27410 1.58872 1.20356 0.86102 0.83101 0.78500 1.90692 1.85539 1.24723 1.38289 1.23545 0.95769 1.06456 1.04771 1.85377 0.97040 1.28489 1.72458 1.22833 0.92481 1.11887 1.41303 0.90977 1.24989 0.98894 0.94780 0.94852 1.70011 1.27165 1.15715 1.37407 0.86226 0.81107 0.78953 0.79229 1.19931 1.20793 1.19946 1.23331 0.95915 1.01932 0.96282 0.88189 0.87906 0.86832 0.91786 0.91682 0.90886 0.91080 0.91737 0.91693 0.76450 0.91177 0.91306 0.90788 0.89485 0.76715 0.89236 0.89207 0.92127 0.89239 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.20 13.70 29.02 0.40 -0.80 16 2 C -0.12 -0.92 8.00 -36.03 -0.29 -1.21 16 3 C -0.06 -0.36 0.84 -156.81 -0.13 -0.49 16 4 C -0.14 -0.65 7.02 37.16 0.26 -0.39 16 5 C -0.14 -0.69 8.35 37.16 0.31 -0.38 16 6 C 0.52 4.72 6.48 -10.98 -0.07 4.65 16 7 O -0.54 -7.09 16.03 5.56 0.09 -7.00 16 8 N -0.73 -4.90 5.34 -60.30 -0.32 -5.22 16 9 C 0.13 0.95 5.51 -4.04 -0.02 0.93 16 10 C -0.12 -0.78 3.75 -89.81 -0.34 -1.12 16 11 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 12 C -0.15 -1.26 7.43 -25.92 -0.19 -1.45 16 13 C 0.13 1.32 4.24 -67.12 -0.28 1.04 16 14 H 0.12 1.42 7.46 -51.93 -0.39 1.03 16 15 N -0.73 -9.15 5.36 -53.02 -0.28 -9.43 16 16 C 0.53 9.65 7.85 -10.98 -0.09 9.56 16 17 O -0.52 -11.46 15.46 5.55 0.09 -11.37 16 18 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 20 C -0.54 -15.25 9.50 30.94 0.29 -14.96 16 21 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 22 C 0.07 2.11 5.50 -17.43 -0.10 2.01 16 23 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 24 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 C -0.14 -0.98 7.39 -25.92 -0.19 -1.17 16 29 H 0.10 0.54 8.06 -52.48 -0.42 0.11 16 30 H 0.10 0.52 5.69 -52.49 -0.30 0.22 16 31 H 0.11 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.06 0.21 7.56 -51.93 -0.39 -0.18 16 33 H 0.06 0.34 7.49 -51.93 -0.39 -0.05 16 34 H 0.07 0.26 7.50 -51.93 -0.39 -0.13 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.25 7.57 -51.93 -0.39 -0.14 16 38 H 0.40 1.80 7.31 -40.82 -0.30 1.50 16 39 H 0.07 0.59 7.84 -51.93 -0.41 0.18 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.76 7.89 -51.93 -0.41 0.35 16 43 H 0.40 3.90 8.73 -40.82 -0.36 3.55 16 44 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 45 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 46 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.09 0.58 8.08 -51.93 -0.42 0.17 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 409.07 15.07 6.16 6.16 Total: -1.00 -36.46 409.07 -8.90 -45.36 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.91 Total: 1.00 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.22 Total: -6.62 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.13 Total: -39.99 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.18 Total: -18.37 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.46 -8.90 -45.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514895936.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.980 kcal (2) G-P(sol) polarization free energy of solvation -36.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds