Wall clock time and date at job start Sat Apr 11 2020 06:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.87035 * 2 1 4 4 C 1.54324 * 109.88190 * 238.98270 * 2 1 3 5 5 H 1.08996 * 110.72258 * 336.93383 * 4 2 1 6 6 N 1.46500 * 110.71828 * 100.03030 * 4 2 1 7 7 C 1.34775 * 119.99894 * 202.55891 * 6 4 2 8 8 O 1.21276 * 119.99984 * 359.97438 * 7 6 4 9 9 C 1.50698 * 120.00022 * 179.97438 * 7 6 4 10 10 S 1.80998 * 109.47116 * 179.97438 * 9 7 6 11 11 C 1.76199 * 100.00013 * 179.97438 * 10 9 7 12 12 H 1.07997 * 120.00250 * 0.02562 * 11 10 9 13 13 C 1.38798 * 120.00102 * 179.72368 * 11 10 9 14 14 N 1.31626 * 120.00155 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00292 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47145 * 60.00107 * 15 13 11 17 17 H 1.48496 * 109.47291 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47229 * 300.00299 * 15 13 11 19 19 C 1.55155 * 103.09938 * 218.47882 * 4 2 1 20 20 C 1.55127 * 101.48606 * 35.28429 * 19 4 2 21 21 N 1.47023 * 109.87990 * 121.17274 * 2 1 3 22 22 C 1.34773 * 125.65137 * 298.32828 * 21 2 1 23 23 O 1.21279 * 120.00026 * 359.97438 * 22 21 2 24 24 C 1.50697 * 120.00022 * 180.02562 * 22 21 2 25 25 H 1.09001 * 115.55087 * 34.32290 * 24 22 21 26 26 C 1.53008 * 117.49639 * 248.61661 * 24 22 21 27 27 C 1.53003 * 60.00007 * 252.50970 * 26 24 22 28 28 C 1.52994 * 117.50032 * 252.50946 * 27 26 24 29 29 C 1.53001 * 117.49786 * 107.48789 * 27 26 24 30 30 H 1.09003 * 109.47395 * 181.01126 * 1 2 3 31 31 H 1.09000 * 109.47282 * 301.01841 * 1 2 3 32 32 H 1.09011 * 109.47113 * 61.01735 * 1 2 3 33 33 H 0.97002 * 120.00447 * 22.55526 * 6 4 2 34 34 H 1.09001 * 109.47434 * 59.99478 * 9 7 6 35 35 H 1.08999 * 109.47072 * 299.99957 * 9 7 6 36 36 H 0.97004 * 120.00604 * 179.97438 * 14 13 11 37 37 H 1.09004 * 111.00374 * 153.49149 * 19 4 2 38 38 H 1.09004 * 111.00436 * 277.34265 * 19 4 2 39 39 H 1.09000 * 110.41754 * 204.29160 * 20 19 4 40 40 H 1.08993 * 110.20586 * 82.04255 * 20 19 4 41 41 H 1.08999 * 117.49809 * 0.02562 * 26 24 22 42 42 H 1.09001 * 117.49830 * 145.02157 * 26 24 22 43 43 H 1.08999 * 109.47142 * 128.62062 * 28 27 26 44 44 H 1.09001 * 109.47477 * 248.62437 * 28 27 26 45 45 H 1.09001 * 109.47220 * 8.62520 * 28 27 26 46 46 H 1.08998 * 109.46809 * 351.38102 * 29 27 26 47 47 H 1.09004 * 109.46621 * 111.37495 * 29 27 26 48 48 H 1.08993 * 109.47344 * 231.38015 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 1 1.3040 -1.4414 -1.6221 6 7 2.4555 0.1992 -2.2872 7 6 2.5056 -0.1976 -3.5742 8 8 2.2194 -1.3388 -3.8685 9 6 2.9172 0.7767 -4.6476 10 16 2.8868 -0.0505 -6.2572 11 6 3.3939 1.2802 -7.2948 12 1 3.6132 2.2465 -6.8654 13 6 3.5177 1.0848 -8.6634 14 7 3.2558 -0.0944 -9.1862 15 14 4.0546 2.4957 -9.7636 16 1 5.3999 2.9654 -9.3452 17 1 4.1082 2.0317 -11.1731 18 1 3.0823 3.6120 -9.6470 19 6 3.2869 -1.5168 -0.6978 20 6 2.8144 -1.8804 0.7343 21 7 2.0300 -0.7157 1.1830 22 6 1.8084 -0.3647 2.4652 23 8 1.1457 0.6188 2.7189 24 6 2.3850 -1.1937 3.5838 25 1 3.3574 -1.6433 3.3826 26 6 1.4062 -1.9858 4.4531 27 6 2.0979 -0.7432 5.0175 28 6 3.1975 -0.9586 6.0593 29 6 1.2474 0.5146 5.2058 30 1 -0.3634 -1.0275 0.0181 31 1 -0.3634 0.5296 0.8807 32 1 -0.3634 0.4980 -0.8991 33 1 2.6848 1.1119 -2.0518 34 1 3.9254 1.1374 -4.4438 35 1 2.2254 1.6190 -4.6585 36 1 3.3419 -0.2309 -10.1428 37 1 3.4811 -2.4127 -1.2876 38 1 4.1664 -0.8735 -0.6662 39 1 3.6715 -2.0358 1.3895 40 1 2.1886 -2.7724 0.7091 41 1 0.3453 -1.9075 4.2157 42 1 1.7346 -2.9567 4.8240 43 1 4.0931 -0.4142 5.7601 44 1 2.8568 -0.5933 7.0281 45 1 3.4260 -2.0219 6.1318 46 1 0.2689 0.3631 4.7501 47 1 1.1254 0.7146 6.2703 48 1 1.7419 1.3620 4.7311 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520515274.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:40 Heat of formation + Delta-G solvation = -50.443918 kcal Electronic energy + Delta-G solvation = -27050.909478 eV Core-core repulsion = 23232.679583 eV Total energy + Delta-G solvation = -3818.229895 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.95087 -39.62930 -38.34091 -36.88814 -34.20327 -32.44893 -31.77062 -31.27265 -29.73681 -28.83843 -27.77846 -25.69046 -25.37828 -24.81178 -22.71362 -21.40922 -20.55896 -19.80938 -18.72347 -17.87202 -17.64768 -16.77842 -16.14831 -15.80056 -15.62508 -14.99124 -14.82174 -14.66486 -14.45251 -14.10488 -14.01687 -13.97114 -13.78559 -13.33528 -13.22007 -12.91779 -12.83603 -12.66205 -12.53167 -12.40682 -12.26406 -12.18631 -12.02585 -11.74282 -11.57142 -11.35980 -11.07479 -11.05174 -11.02701 -10.78456 -10.60464 -10.23265 -9.85407 -9.73685 -9.48407 -9.09125 -9.03470 -8.92005 -8.27489 -6.52734 -6.23575 -3.94521 2.20271 2.45599 2.99319 3.02364 3.22364 3.26484 3.29826 3.35694 3.66163 3.95735 4.18582 4.20947 4.24698 4.36336 4.40250 4.64204 4.70948 4.78665 4.84873 4.90543 5.06161 5.11156 5.11650 5.15946 5.27191 5.27238 5.30606 5.38178 5.45439 5.52356 5.55723 5.61116 5.64601 5.70119 5.72255 5.78145 5.83887 5.84824 5.90545 6.02399 6.07491 6.10693 6.19792 6.53107 7.19773 7.57238 7.60134 7.91024 8.33050 8.51930 9.21757 10.83738 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032549 B = 0.001832 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.023640 B =15278.322208 C =15461.324542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 H 0.080 0.920 4 C 0.141 3.859 5 H 0.107 0.893 6 N -0.730 5.730 7 C 0.536 3.464 8 O -0.514 6.514 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C -0.147 4.147 20 C 0.101 3.899 21 N -0.611 5.611 22 C 0.561 3.439 23 O -0.531 6.531 24 C -0.186 4.186 25 H 0.121 0.879 26 C -0.145 4.145 27 C -0.094 4.094 28 C -0.117 4.117 29 C -0.103 4.103 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.400 0.600 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.269 0.731 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.049 0.951 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.946 -2.625 29.612 29.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.028 3.972 3 H 0.098 0.902 4 C 0.035 3.965 5 H 0.125 0.875 6 N -0.385 5.385 7 C 0.322 3.678 8 O -0.388 6.388 9 C -0.305 4.305 10 S 0.168 5.832 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 C -0.186 4.186 20 C -0.022 4.022 21 N -0.345 5.345 22 C 0.350 3.650 23 O -0.408 6.408 24 C -0.207 4.207 25 H 0.139 0.861 26 C -0.183 4.183 27 C -0.095 4.095 28 C -0.174 4.174 29 C -0.160 4.160 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.234 0.766 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.067 0.933 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.814 -4.092 29.146 29.488 hybrid contribution 0.981 2.512 -0.470 2.738 sum -0.834 -1.580 28.676 28.732 Atomic orbital electron populations 1.22130 0.93878 1.02647 1.03276 1.21681 0.95221 0.96322 0.83974 0.90156 1.21911 0.96789 0.91391 0.86440 0.87511 1.45964 1.71617 1.14528 1.06347 1.20324 0.76248 0.88891 0.82290 1.90702 1.46747 1.19744 1.81604 1.23539 1.04191 1.01867 1.00878 1.85379 1.89203 1.16869 0.91752 1.22825 1.53209 0.98186 0.94286 0.90957 1.24986 0.94877 0.96547 0.97122 1.70001 1.45609 1.21788 1.12877 0.86225 0.79173 0.81214 0.78901 1.19941 1.20796 1.19928 1.23303 0.98542 1.02212 0.94571 1.22399 0.95355 0.88813 0.95608 1.48461 1.52796 1.28557 1.04712 1.19315 0.79751 0.84563 0.81380 1.90703 1.39978 1.27430 1.82710 1.22335 1.01790 1.05097 0.91492 0.86065 1.23218 0.97933 0.95990 1.01119 1.21612 0.99572 0.96654 0.91627 1.21402 0.96849 1.01703 0.97436 1.21355 0.99365 0.95190 1.00075 0.92272 0.91024 0.91213 0.76595 0.89150 0.89114 0.92107 0.88743 0.90072 0.90259 0.90778 0.88256 0.87805 0.91957 0.91559 0.92250 0.91701 0.93254 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.09 37.16 0.34 -1.33 16 2 C 0.13 1.33 3.21 -66.95 -0.22 1.11 16 3 H 0.08 0.83 7.70 -51.93 -0.40 0.43 16 4 C 0.14 1.55 2.79 -66.10 -0.18 1.36 16 5 H 0.11 1.35 7.33 -51.93 -0.38 0.97 16 6 N -0.73 -9.08 5.19 -52.03 -0.27 -9.35 16 7 C 0.54 9.40 7.85 -10.99 -0.09 9.31 16 8 O -0.51 -10.97 15.55 5.56 0.09 -10.89 16 9 C -0.15 -2.99 6.16 36.00 0.22 -2.77 16 10 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 11 C -0.54 -15.11 9.50 30.94 0.29 -14.81 16 12 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 13 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -25.91 13.22 55.49 0.73 -25.17 16 15 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 C -0.15 -1.37 6.79 -24.47 -0.17 -1.53 16 20 C 0.10 0.76 6.69 -2.41 -0.02 0.74 16 21 N -0.61 -5.73 3.07 -162.89 -0.50 -6.23 16 22 C 0.56 5.79 7.41 -10.99 -0.08 5.71 16 23 O -0.53 -6.93 12.16 5.56 0.07 -6.86 16 24 C -0.19 -1.42 5.25 -91.77 -0.48 -1.90 16 25 H 0.12 0.73 7.07 -51.93 -0.37 0.37 16 26 C -0.15 -0.95 9.52 -26.73 -0.25 -1.20 16 27 C -0.09 -0.69 2.70 -154.51 -0.42 -1.10 16 28 C -0.12 -0.63 9.85 37.15 0.37 -0.26 16 29 C -0.10 -0.89 8.09 37.16 0.30 -0.59 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.82 6.91 -51.93 -0.36 0.47 16 32 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.40 3.98 8.34 -40.82 -0.34 3.64 16 34 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 35 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.45 7.00 -51.93 -0.36 0.09 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.73 8.05 -51.93 -0.42 0.31 16 42 H 0.10 0.49 8.05 -51.93 -0.42 0.07 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.32 7.92 -51.93 -0.41 -0.09 16 45 H 0.06 0.26 7.90 -51.93 -0.41 -0.15 16 46 H 0.06 0.65 7.02 -51.93 -0.36 0.29 16 47 H 0.05 0.35 7.92 -51.93 -0.41 -0.06 16 48 H 0.07 0.70 7.26 -51.93 -0.38 0.32 16 LS Contribution 400.74 15.07 6.04 6.04 Total: -1.00 -34.36 400.74 -9.50 -43.86 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.95 Total: 1.43 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -0.48 Total: -5.28 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: -0.04 Total: -40.75 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: 0.15 Total: -17.75 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.36 -9.50 -43.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520515274.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.585 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds