Wall clock time and date at job start Sat Apr 11 2020 06:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.87035 * 2 1 4 4 C 1.54324 * 109.88190 * 238.98270 * 2 1 3 5 5 H 1.08996 * 110.72258 * 336.93383 * 4 2 1 6 6 N 1.46500 * 110.71828 * 100.03030 * 4 2 1 7 7 C 1.34775 * 119.99894 * 202.55891 * 6 4 2 8 8 O 1.21276 * 119.99984 * 359.97438 * 7 6 4 9 9 C 1.50698 * 120.00022 * 179.97438 * 7 6 4 10 10 S 1.80998 * 109.47116 * 179.97438 * 9 7 6 11 11 C 1.76199 * 100.00013 * 179.97438 * 10 9 7 12 12 H 1.07997 * 120.00250 * 0.02562 * 11 10 9 13 13 C 1.38798 * 120.00102 * 179.72368 * 11 10 9 14 14 N 1.31626 * 120.00155 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00292 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47145 * 60.00107 * 15 13 11 17 17 H 1.48496 * 109.47291 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47229 * 300.00299 * 15 13 11 19 19 C 1.55155 * 103.09938 * 218.47882 * 4 2 1 20 20 C 1.55127 * 101.48606 * 35.28429 * 19 4 2 21 21 N 1.47023 * 109.87990 * 121.17274 * 2 1 3 22 22 C 1.34773 * 125.65137 * 298.32828 * 21 2 1 23 23 O 1.21279 * 120.00026 * 359.97438 * 22 21 2 24 24 C 1.50697 * 120.00022 * 180.02562 * 22 21 2 25 25 H 1.09001 * 115.55087 * 34.32290 * 24 22 21 26 26 C 1.53008 * 117.49639 * 248.61661 * 24 22 21 27 27 C 1.53003 * 60.00007 * 252.50970 * 26 24 22 28 28 C 1.52994 * 117.50032 * 252.50946 * 27 26 24 29 29 C 1.53001 * 117.49786 * 107.48789 * 27 26 24 30 30 H 1.09003 * 109.47395 * 181.01126 * 1 2 3 31 31 H 1.09000 * 109.47282 * 301.01841 * 1 2 3 32 32 H 1.09011 * 109.47113 * 61.01735 * 1 2 3 33 33 H 0.97002 * 120.00447 * 22.55526 * 6 4 2 34 34 H 1.09001 * 109.47434 * 59.99478 * 9 7 6 35 35 H 1.08999 * 109.47072 * 299.99957 * 9 7 6 36 36 H 0.97004 * 120.00604 * 179.97438 * 14 13 11 37 37 H 1.09004 * 111.00374 * 153.49149 * 19 4 2 38 38 H 1.09004 * 111.00436 * 277.34265 * 19 4 2 39 39 H 1.09000 * 110.41754 * 204.29160 * 20 19 4 40 40 H 1.08993 * 110.20586 * 82.04255 * 20 19 4 41 41 H 1.08999 * 117.49809 * 0.02562 * 26 24 22 42 42 H 1.09001 * 117.49830 * 145.02157 * 26 24 22 43 43 H 1.08999 * 109.47142 * 128.62062 * 28 27 26 44 44 H 1.09001 * 109.47477 * 248.62437 * 28 27 26 45 45 H 1.09001 * 109.47220 * 8.62520 * 28 27 26 46 46 H 1.08998 * 109.46809 * 351.38102 * 29 27 26 47 47 H 1.09004 * 109.46621 * 111.37495 * 29 27 26 48 48 H 1.08993 * 109.47344 * 231.38015 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 1 1.3040 -1.4414 -1.6221 6 7 2.4555 0.1992 -2.2872 7 6 2.5056 -0.1976 -3.5742 8 8 2.2194 -1.3388 -3.8685 9 6 2.9172 0.7767 -4.6476 10 16 2.8868 -0.0505 -6.2572 11 6 3.3939 1.2802 -7.2948 12 1 3.6132 2.2465 -6.8654 13 6 3.5177 1.0848 -8.6634 14 7 3.2558 -0.0944 -9.1862 15 14 4.0546 2.4957 -9.7636 16 1 5.3999 2.9654 -9.3452 17 1 4.1082 2.0317 -11.1731 18 1 3.0823 3.6120 -9.6470 19 6 3.2869 -1.5168 -0.6978 20 6 2.8144 -1.8804 0.7343 21 7 2.0300 -0.7157 1.1830 22 6 1.8084 -0.3647 2.4652 23 8 1.1457 0.6188 2.7189 24 6 2.3850 -1.1937 3.5838 25 1 3.3574 -1.6433 3.3826 26 6 1.4062 -1.9858 4.4531 27 6 2.0979 -0.7432 5.0175 28 6 3.1975 -0.9586 6.0593 29 6 1.2474 0.5146 5.2058 30 1 -0.3634 -1.0275 0.0181 31 1 -0.3634 0.5296 0.8807 32 1 -0.3634 0.4980 -0.8991 33 1 2.6848 1.1119 -2.0518 34 1 3.9254 1.1374 -4.4438 35 1 2.2254 1.6190 -4.6585 36 1 3.3419 -0.2309 -10.1428 37 1 3.4811 -2.4127 -1.2876 38 1 4.1664 -0.8735 -0.6662 39 1 3.6715 -2.0358 1.3895 40 1 2.1886 -2.7724 0.7091 41 1 0.3453 -1.9075 4.2157 42 1 1.7346 -2.9567 4.8240 43 1 4.0931 -0.4142 5.7601 44 1 2.8568 -0.5933 7.0281 45 1 3.4260 -2.0219 6.1318 46 1 0.2689 0.3631 4.7501 47 1 1.1254 0.7146 6.2703 48 1 1.7419 1.3620 4.7311 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520515274.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:39 Heat of formation + Delta-G solvation = -72.358810 kcal Electronic energy + Delta-G solvation = -27051.859779 eV Core-core repulsion = 23232.679583 eV Total energy + Delta-G solvation = -3819.180196 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.75938 -40.71945 -39.29810 -37.67920 -35.34352 -34.57920 -32.65652 -32.23937 -30.61632 -29.90498 -28.32896 -27.67979 -26.41223 -25.53362 -23.44836 -22.30835 -21.76723 -20.52618 -19.79610 -19.40609 -18.45698 -17.95776 -17.30663 -16.87289 -16.83342 -16.39155 -16.36672 -15.85100 -15.23163 -15.19882 -14.86655 -14.79331 -14.64641 -14.51241 -14.37442 -14.01102 -13.80621 -13.59713 -13.43288 -13.33762 -13.16588 -13.04298 -12.94235 -12.86996 -12.71694 -12.62535 -12.55444 -12.28663 -12.10600 -11.88352 -11.73281 -11.16661 -11.12704 -10.99313 -10.85161 -10.44623 -10.27779 -10.15560 -9.73223 -8.65514 -8.34299 -6.11872 1.24825 1.43739 1.44610 1.46929 1.54103 1.58301 1.76940 2.27012 2.33173 2.78693 2.99813 3.18870 3.32039 3.46619 3.66410 3.69667 3.83189 3.90435 3.92483 4.07935 4.11864 4.19603 4.20983 4.25619 4.31256 4.51880 4.52384 4.63091 4.65673 4.72433 4.82938 4.85300 4.86059 4.96567 5.00839 5.05799 5.08360 5.09824 5.12196 5.14181 5.26442 5.34237 5.42202 5.44601 5.52578 6.19920 6.40636 6.48175 7.07197 7.13820 7.19812 8.74447 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032549 B = 0.001832 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.023640 B =15278.322208 C =15461.324542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.138 3.862 3 H 0.081 0.919 4 C 0.140 3.860 5 H 0.091 0.909 6 N -0.706 5.706 7 C 0.542 3.458 8 O -0.557 6.557 9 C -0.132 4.132 10 S -0.146 6.146 11 C -0.548 4.548 12 H 0.082 0.918 13 C 0.015 3.985 14 N -0.910 5.910 15 Si 0.996 3.004 16 H -0.262 1.262 17 H -0.279 1.279 18 H -0.263 1.263 19 C -0.142 4.142 20 C 0.106 3.894 21 N -0.610 5.610 22 C 0.553 3.447 23 O -0.566 6.566 24 C -0.189 4.189 25 H 0.144 0.856 26 C -0.134 4.134 27 C -0.102 4.102 28 C -0.113 4.113 29 C -0.098 4.098 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.415 0.585 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.271 0.729 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.130 0.870 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.044 0.956 47 H 0.062 0.938 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.448 -2.071 31.445 31.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.033 3.967 3 H 0.098 0.902 4 C 0.034 3.966 5 H 0.109 0.891 6 N -0.360 5.360 7 C 0.328 3.672 8 O -0.435 6.435 9 C -0.283 4.283 10 S 0.081 5.919 11 C -0.696 4.696 12 H 0.100 0.900 13 C -0.190 4.190 14 N -0.546 5.546 15 Si 0.818 3.182 16 H -0.187 1.187 17 H -0.204 1.204 18 H -0.188 1.188 19 C -0.181 4.181 20 C -0.016 4.016 21 N -0.344 5.344 22 C 0.344 3.656 23 O -0.445 6.445 24 C -0.210 4.210 25 H 0.162 0.838 26 C -0.171 4.171 27 C -0.103 4.103 28 C -0.170 4.170 29 C -0.156 4.156 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.252 0.748 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.125 0.875 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.148 0.852 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.063 0.937 47 H 0.080 0.920 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.408 -3.523 31.029 31.231 hybrid contribution 0.485 2.360 -0.908 2.575 sum 0.077 -1.162 30.121 30.143 Atomic orbital electron populations 1.22058 0.94263 1.02465 1.02566 1.21532 0.94831 0.96309 0.84006 0.90152 1.21962 0.97586 0.91031 0.85997 0.89106 1.45675 1.69800 1.15599 1.04921 1.19962 0.76100 0.87790 0.83368 1.90695 1.49053 1.21285 1.82439 1.23383 1.06026 1.01852 0.97031 1.85523 1.89577 1.19640 0.97118 1.23179 1.53042 0.98468 0.94931 0.89982 1.26094 0.94682 0.99444 0.98824 1.70165 1.46921 1.24274 1.13281 0.85035 0.79198 0.77472 0.76493 1.18669 1.20395 1.18809 1.23249 0.97685 1.01656 0.95541 1.22513 0.96228 0.88216 0.94674 1.48512 1.52680 1.28907 1.04296 1.19873 0.79298 0.84423 0.82007 1.90696 1.41556 1.29049 1.83234 1.22400 1.02873 1.05232 0.90505 0.83792 1.23286 0.97124 0.96750 0.99979 1.21706 1.00217 0.96266 0.92090 1.21398 0.95937 1.02812 0.96812 1.21255 0.98413 0.95484 1.00403 0.92184 0.92308 0.91284 0.74759 0.87139 0.87338 0.91991 0.89442 0.89522 0.87546 0.89731 0.89524 0.85241 0.91967 0.91144 0.90634 0.93705 0.91954 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 9.09 71.98 0.65 -2.54 16 2 C 0.14 2.62 3.21 45.34 0.15 2.77 16 3 H 0.08 1.56 7.70 -2.39 -0.02 1.54 16 4 C 0.14 2.92 2.79 46.18 0.13 3.05 16 5 H 0.09 2.27 7.33 -2.39 -0.02 2.26 16 6 N -0.71 -16.60 5.19 -436.93 -2.27 -18.87 16 7 C 0.54 18.71 7.85 87.66 0.69 19.40 16 8 O -0.56 -24.14 15.55 -3.02 -0.05 -24.19 16 9 C -0.13 -5.01 6.16 71.24 0.44 -4.58 16 10 S -0.15 -7.91 20.57 -56.49 -1.16 -9.07 16 11 C -0.55 -30.93 9.50 67.95 0.65 -30.29 16 12 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 13 C 0.01 0.82 5.49 84.86 0.47 1.29 16 14 N -0.91 -55.37 13.22 21.65 0.29 -55.09 16 15 Si 1.00 43.24 29.55 68.60 2.03 45.26 16 16 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 17 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 19 C -0.14 -2.38 6.79 32.06 0.22 -2.16 16 20 C 0.11 1.30 6.69 86.93 0.58 1.88 16 21 N -0.61 -10.46 3.07 -787.64 -2.41 -12.87 16 22 C 0.55 10.81 7.41 87.66 0.65 11.46 16 23 O -0.57 -14.86 12.16 -3.03 -0.04 -14.90 16 24 C -0.19 -2.45 5.25 -11.54 -0.06 -2.51 16 25 H 0.14 1.19 7.07 -2.39 -0.02 1.17 16 26 C -0.13 -1.45 9.52 30.60 0.29 -1.15 16 27 C -0.10 -1.31 2.70 -52.18 -0.14 -1.45 16 28 C -0.11 -0.91 9.85 71.98 0.71 -0.20 16 29 C -0.10 -1.70 8.09 71.98 0.58 -1.11 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.38 6.91 -2.39 -0.02 1.36 16 32 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.42 7.37 8.34 -92.71 -0.77 6.59 16 34 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 35 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 36 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.11 0.79 7.00 -2.39 -0.02 0.78 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.09 1.17 8.05 -2.39 -0.02 1.15 16 42 H 0.13 0.75 8.05 -2.39 -0.02 0.73 16 43 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.07 0.51 7.92 -2.39 -0.02 0.49 16 45 H 0.07 0.38 7.90 -2.39 -0.02 0.36 16 46 H 0.04 0.93 7.02 -2.39 -0.02 0.91 16 47 H 0.06 0.86 7.92 -2.39 -0.02 0.84 16 48 H 0.05 0.99 7.26 -2.39 -0.02 0.97 16 Total: -1.00 -77.36 400.74 2.57 -74.80 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.18 Total: 21.07 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 6.00 Total: -6.15 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -4.40 Total: -86.82 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -0.08 Total: -39.09 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -7.91 SS G_CDS: -1.16 Total: -9.07 kcal Total: -77.36 2.57 -74.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520515274.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.438 kcal (2) G-P(sol) polarization free energy of solvation -77.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds