Wall clock time and date at job start Sat Apr 11 2020 06:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 115.55292 * 2 1 4 4 C 1.52997 * 117.50138 * 145.71434 * 2 1 3 5 5 C 1.53000 * 60.00347 * 107.48485 * 4 2 1 6 6 H 1.08990 * 117.49990 * 252.50929 * 5 4 2 7 7 C 1.50697 * 117.49504 * 107.48912 * 5 4 2 8 8 O 1.21284 * 120.00304 * 291.38035 * 7 5 4 9 9 N 1.34777 * 120.00030 * 111.38036 * 7 5 4 10 10 C 1.47487 * 127.03601 * 179.97438 * 9 7 5 11 11 C 1.53999 * 107.08407 * 154.51627 * 10 9 7 12 12 H 1.09002 * 110.32903 * 120.29932 * 11 10 9 13 13 C 1.53003 * 110.33084 * 242.41596 * 11 10 9 14 14 N 1.46505 * 109.46749 * 293.55106 * 13 11 10 15 15 C 1.34774 * 119.99539 * 179.97438 * 14 13 11 16 16 O 1.21277 * 120.00308 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99631 * 179.97438 * 15 14 13 18 18 S 1.81004 * 109.47191 * 179.97438 * 17 15 14 19 19 C 1.76193 * 100.00314 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99803 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00399 * 180.02562 * 19 18 17 22 22 N 1.31630 * 119.99739 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00088 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47104 * 60.00528 * 23 21 19 25 25 H 1.48501 * 109.46967 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47370 * 300.00023 * 23 21 19 27 27 C 1.54615 * 105.04459 * 1.30831 * 11 10 9 28 28 H 1.09002 * 110.74228 * 263.51042 * 27 11 10 29 29 C 1.52998 * 110.73969 * 140.36624 * 27 11 10 30 30 C 1.48114 * 127.03163 * 359.68284 * 9 7 5 31 31 H 1.09000 * 109.47531 * 205.66829 * 1 2 3 32 32 H 1.09004 * 109.47098 * 325.66994 * 1 2 3 33 33 H 1.08998 * 109.47654 * 85.66462 * 1 2 3 34 34 H 1.09002 * 117.49910 * 359.97438 * 4 2 1 35 35 H 1.09002 * 117.49884 * 214.98139 * 4 2 1 36 36 H 1.08994 * 109.91174 * 273.87945 * 10 9 7 37 37 H 1.08999 * 109.91248 * 34.96404 * 10 9 7 38 38 H 1.09002 * 109.46723 * 53.54056 * 13 11 10 39 39 H 1.08993 * 109.47402 * 173.54471 * 13 11 10 40 40 H 0.96995 * 120.00185 * 359.97438 * 14 13 11 41 41 H 1.09000 * 109.47787 * 300.00092 * 17 15 14 42 42 H 1.09002 * 109.46994 * 60.00249 * 17 15 14 43 43 H 0.97006 * 120.00330 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.47477 * 60.00188 * 29 27 11 45 45 H 1.09005 * 109.47457 * 179.97438 * 29 27 11 46 46 H 1.08995 * 109.47312 * 299.99918 * 29 27 11 47 47 H 1.08999 * 110.66355 * 337.76586 * 30 9 7 48 48 H 1.09004 * 110.66328 * 100.88738 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1213 0.7645 5 6 2.2363 -1.1207 -0.7655 6 1 1.6111 -1.8580 -1.2690 7 6 3.5291 -0.7806 -1.4612 8 8 3.9717 0.3470 -1.4012 9 7 4.1936 -1.7295 -2.1501 10 6 5.4624 -1.5694 -2.8848 11 6 6.1320 -2.9551 -2.9386 12 1 6.2745 -3.2669 -3.9733 13 6 7.4736 -2.9262 -2.2036 14 7 8.4080 -2.0600 -2.9268 15 6 9.6599 -1.8818 -2.4607 16 8 10.0129 -2.4380 -1.4425 17 6 10.6213 -0.9913 -3.2050 18 16 12.2079 -0.9557 -2.3346 19 6 13.1122 0.1264 -3.3909 20 1 12.6416 0.5404 -4.2705 21 6 14.4297 0.4461 -3.0933 22 7 15.0034 -0.0588 -2.0216 23 14 15.3885 1.5928 -4.2136 24 1 14.7052 2.9098 -4.2758 25 1 16.7624 1.7722 -3.6794 26 1 15.4605 1.0075 -5.5765 27 6 5.1463 -3.9053 -2.2201 28 1 5.4329 -4.0423 -1.1774 29 6 5.0703 -5.2529 -2.9405 30 6 3.8020 -3.1478 -2.3194 31 1 -0.3634 -0.9262 0.4451 32 1 -0.3633 0.8487 0.5796 33 1 -0.3634 0.0777 -1.0247 34 1 1.6112 -1.8588 1.2678 35 1 3.1715 -0.8756 1.2679 36 1 5.2637 -1.2135 -3.8957 37 1 6.1071 -0.8624 -2.3626 38 1 7.3269 -2.5401 -1.1949 39 1 7.8807 -3.9359 -2.1506 40 1 8.1256 -1.6149 -3.7410 41 1 10.7683 -1.3778 -4.2135 42 1 10.2140 0.0184 -3.2586 43 1 15.9243 0.1642 -1.8138 44 1 6.0578 -5.7143 -2.9532 45 1 4.3714 -5.9057 -2.4174 46 1 4.7280 -5.0991 -3.9638 47 1 3.1267 -3.4582 -1.5220 48 1 3.3445 -3.3067 -3.2959 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521790913.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:47 Heat of formation + Delta-G solvation = -58.575792 kcal Electronic energy + Delta-G solvation = -26647.526386 eV Core-core repulsion = 22828.943867 eV Total energy + Delta-G solvation = -3818.582519 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.75742 -39.39660 -38.52421 -36.88289 -34.74497 -33.15421 -32.40956 -30.99566 -29.45605 -28.80135 -26.85611 -26.32901 -25.43516 -23.85579 -22.30735 -21.24391 -20.57968 -20.09759 -19.37963 -17.91980 -17.58492 -16.84944 -16.17570 -16.01629 -15.84716 -15.30352 -14.99980 -14.78582 -14.63422 -14.12206 -14.05390 -13.96093 -13.57759 -13.51302 -13.26556 -13.14495 -13.04441 -12.65758 -12.58495 -12.51398 -12.28340 -12.06860 -11.83692 -11.80834 -11.32898 -11.20450 -11.06138 -11.02242 -11.02062 -10.78739 -10.74451 -10.49268 -10.08943 -9.80758 -9.40000 -9.05649 -9.04359 -8.89669 -8.22236 -6.48065 -6.19634 -3.90185 2.17402 2.51663 3.03142 3.11056 3.25202 3.28836 3.32234 3.40088 3.68264 3.93464 4.04195 4.22392 4.26779 4.29464 4.35796 4.37975 4.66543 4.70379 4.84985 4.89499 4.95840 4.99737 5.04006 5.15131 5.15397 5.18368 5.27181 5.28863 5.32119 5.34646 5.46784 5.49469 5.52808 5.61722 5.62440 5.68511 5.71741 5.76629 5.83505 5.90163 5.91468 6.03249 6.16046 6.59394 7.17635 7.61149 7.69221 7.86664 8.36964 8.61518 9.25485 10.87741 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.001993 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.065403 B =14047.914746 C =15070.022110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 H 0.118 0.882 4 C -0.148 4.148 5 C -0.189 4.189 6 H 0.122 0.878 7 C 0.561 3.439 8 O -0.536 6.536 9 N -0.619 5.619 10 C 0.105 3.895 11 C -0.110 4.110 12 H 0.095 0.905 13 C 0.131 3.869 14 N -0.740 5.740 15 C 0.532 3.468 16 O -0.517 6.517 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.098 4.098 28 H 0.089 0.911 29 C -0.143 4.143 30 C 0.105 3.895 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.084 0.916 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.668 -8.762 -1.453 32.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 H 0.136 0.864 4 C -0.185 4.185 5 C -0.210 4.210 6 H 0.140 0.860 7 C 0.350 3.650 8 O -0.412 6.412 9 N -0.353 5.353 10 C -0.017 4.017 11 C -0.129 4.129 12 H 0.114 0.886 13 C 0.007 3.993 14 N -0.395 5.395 15 C 0.319 3.681 16 O -0.391 6.391 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.118 4.118 28 H 0.108 0.892 29 C -0.200 4.200 30 C -0.018 4.018 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.102 0.898 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -30.721 -9.007 0.459 32.018 hybrid contribution 0.141 1.457 -2.439 2.844 sum -30.580 -7.550 -1.979 31.560 Atomic orbital electron populations 1.21401 0.92104 1.02318 1.02210 1.22411 0.95287 0.95175 1.01209 0.86409 1.23127 1.03299 1.01530 0.90539 1.22245 0.97386 1.05464 0.95877 0.86011 1.19341 0.84448 0.83622 0.77623 1.90739 1.68499 1.20615 1.61348 1.48652 1.24182 1.10536 1.51891 1.22163 0.85273 0.97465 0.96826 1.22467 0.94534 0.94755 1.01182 0.88628 1.21311 0.87042 0.95343 0.95602 1.46015 1.12809 1.51087 1.29606 1.20303 0.81537 0.81281 0.85020 1.90702 1.76454 1.47817 1.24177 1.23537 1.02137 1.01079 1.03707 1.85385 1.00269 1.63036 1.34659 1.22829 0.99902 1.33080 1.12600 0.90970 1.24992 0.96611 0.96293 0.95696 1.70010 1.13480 1.42237 1.24583 0.86222 0.78581 0.80503 0.80180 1.19926 1.20813 1.19955 1.22221 0.93839 0.94672 1.01067 0.89245 1.21758 1.02770 0.95315 1.00177 1.22595 0.97094 0.80070 1.02087 0.92325 0.91536 0.91955 0.87660 0.88112 0.91287 0.89721 0.91500 0.91113 0.76848 0.89200 0.89192 0.92141 0.91625 0.92073 0.92194 0.89801 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.19 37.15 0.38 -0.26 16 2 C -0.12 -0.93 5.92 -90.62 -0.54 -1.46 16 3 H 0.12 1.13 7.67 -51.93 -0.40 0.73 16 4 C -0.15 -1.01 9.88 -26.73 -0.26 -1.27 16 5 C -0.19 -1.45 4.98 -91.77 -0.46 -1.91 16 6 H 0.12 0.66 7.62 -51.93 -0.40 0.27 16 7 C 0.56 6.29 7.67 -10.99 -0.08 6.21 16 8 O -0.54 -8.36 16.59 5.55 0.09 -8.27 16 9 N -0.62 -5.63 3.29 -169.97 -0.56 -6.19 16 10 C 0.11 0.97 6.31 -2.98 -0.02 0.95 16 11 C -0.11 -0.82 2.64 -89.25 -0.24 -1.06 16 12 H 0.10 0.59 7.86 -51.93 -0.41 0.18 16 13 C 0.13 1.46 4.76 -4.04 -0.02 1.44 16 14 N -0.74 -9.74 5.29 -60.29 -0.32 -10.06 16 15 C 0.53 10.03 7.85 -10.99 -0.09 9.95 16 16 O -0.52 -11.90 15.86 5.56 0.09 -11.82 16 17 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.54 -15.46 9.50 30.94 0.29 -15.17 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.45 13.22 55.49 0.73 -25.72 16 23 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 C -0.10 -0.58 3.18 -88.92 -0.28 -0.86 16 28 H 0.09 0.60 7.86 -51.93 -0.41 0.19 16 29 C -0.14 -0.63 9.17 37.16 0.34 -0.29 16 30 C 0.10 0.58 6.27 -2.30 -0.01 0.57 16 31 H 0.06 0.24 7.90 -51.93 -0.41 -0.17 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.11 0.49 8.05 -51.93 -0.42 0.07 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 1.01 7.49 -51.93 -0.39 0.62 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.40 4.08 8.32 -40.82 -0.34 3.75 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.06 0.23 8.11 -51.93 -0.42 -0.19 16 47 H 0.08 0.35 7.17 -51.93 -0.37 -0.02 16 48 H 0.08 0.33 8.02 -51.93 -0.42 -0.09 16 LS Contribution 409.26 15.07 6.17 6.17 Total: -1.00 -37.46 409.26 -10.04 -47.51 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -8.15 Total: -0.32 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -0.86 Total: -4.07 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: -0.14 Total: -41.97 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: 0.18 Total: -20.09 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -37.46 -10.04 -47.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521790913.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.070 kcal (2) G-P(sol) polarization free energy of solvation -37.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds