Wall clock time and date at job start Sat Apr 11 2020 06:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 115.55292 * 2 1 4 4 C 1.52997 * 117.50138 * 145.71434 * 2 1 3 5 5 C 1.53000 * 60.00347 * 107.48485 * 4 2 1 6 6 H 1.08990 * 117.49990 * 252.50929 * 5 4 2 7 7 C 1.50697 * 117.49504 * 107.48912 * 5 4 2 8 8 O 1.21284 * 120.00304 * 291.38035 * 7 5 4 9 9 N 1.34777 * 120.00030 * 111.38036 * 7 5 4 10 10 C 1.47487 * 127.03601 * 179.97438 * 9 7 5 11 11 C 1.53999 * 107.08407 * 154.51627 * 10 9 7 12 12 H 1.09002 * 110.32903 * 120.29932 * 11 10 9 13 13 C 1.53003 * 110.33084 * 242.41596 * 11 10 9 14 14 N 1.46505 * 109.46749 * 293.55106 * 13 11 10 15 15 C 1.34774 * 119.99539 * 179.97438 * 14 13 11 16 16 O 1.21277 * 120.00308 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99631 * 179.97438 * 15 14 13 18 18 S 1.81004 * 109.47191 * 179.97438 * 17 15 14 19 19 C 1.76193 * 100.00314 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99803 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00399 * 180.02562 * 19 18 17 22 22 N 1.31630 * 119.99739 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00088 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47104 * 60.00528 * 23 21 19 25 25 H 1.48501 * 109.46967 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47370 * 300.00023 * 23 21 19 27 27 C 1.54615 * 105.04459 * 1.30831 * 11 10 9 28 28 H 1.09002 * 110.74228 * 263.51042 * 27 11 10 29 29 C 1.52998 * 110.73969 * 140.36624 * 27 11 10 30 30 C 1.48114 * 127.03163 * 359.68284 * 9 7 5 31 31 H 1.09000 * 109.47531 * 205.66829 * 1 2 3 32 32 H 1.09004 * 109.47098 * 325.66994 * 1 2 3 33 33 H 1.08998 * 109.47654 * 85.66462 * 1 2 3 34 34 H 1.09002 * 117.49910 * 359.97438 * 4 2 1 35 35 H 1.09002 * 117.49884 * 214.98139 * 4 2 1 36 36 H 1.08994 * 109.91174 * 273.87945 * 10 9 7 37 37 H 1.08999 * 109.91248 * 34.96404 * 10 9 7 38 38 H 1.09002 * 109.46723 * 53.54056 * 13 11 10 39 39 H 1.08993 * 109.47402 * 173.54471 * 13 11 10 40 40 H 0.96995 * 120.00185 * 359.97438 * 14 13 11 41 41 H 1.09000 * 109.47787 * 300.00092 * 17 15 14 42 42 H 1.09002 * 109.46994 * 60.00249 * 17 15 14 43 43 H 0.97006 * 120.00330 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.47477 * 60.00188 * 29 27 11 45 45 H 1.09005 * 109.47457 * 179.97438 * 29 27 11 46 46 H 1.08995 * 109.47312 * 299.99918 * 29 27 11 47 47 H 1.08999 * 110.66355 * 337.76586 * 30 9 7 48 48 H 1.09004 * 110.66328 * 100.88738 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1213 0.7645 5 6 2.2363 -1.1207 -0.7655 6 1 1.6111 -1.8580 -1.2690 7 6 3.5291 -0.7806 -1.4612 8 8 3.9717 0.3470 -1.4012 9 7 4.1936 -1.7295 -2.1501 10 6 5.4624 -1.5694 -2.8848 11 6 6.1320 -2.9551 -2.9386 12 1 6.2745 -3.2669 -3.9733 13 6 7.4736 -2.9262 -2.2036 14 7 8.4080 -2.0600 -2.9268 15 6 9.6599 -1.8818 -2.4607 16 8 10.0129 -2.4380 -1.4425 17 6 10.6213 -0.9913 -3.2050 18 16 12.2079 -0.9557 -2.3346 19 6 13.1122 0.1264 -3.3909 20 1 12.6416 0.5404 -4.2705 21 6 14.4297 0.4461 -3.0933 22 7 15.0034 -0.0588 -2.0216 23 14 15.3885 1.5928 -4.2136 24 1 14.7052 2.9098 -4.2758 25 1 16.7624 1.7722 -3.6794 26 1 15.4605 1.0075 -5.5765 27 6 5.1463 -3.9053 -2.2201 28 1 5.4329 -4.0423 -1.1774 29 6 5.0703 -5.2529 -2.9405 30 6 3.8020 -3.1478 -2.3194 31 1 -0.3634 -0.9262 0.4451 32 1 -0.3633 0.8487 0.5796 33 1 -0.3634 0.0777 -1.0247 34 1 1.6112 -1.8588 1.2678 35 1 3.1715 -0.8756 1.2679 36 1 5.2637 -1.2135 -3.8957 37 1 6.1071 -0.8624 -2.3626 38 1 7.3269 -2.5401 -1.1949 39 1 7.8807 -3.9359 -2.1506 40 1 8.1256 -1.6149 -3.7410 41 1 10.7683 -1.3778 -4.2135 42 1 10.2140 0.0184 -3.2586 43 1 15.9243 0.1642 -1.8138 44 1 6.0578 -5.7143 -2.9532 45 1 4.3714 -5.9057 -2.4174 46 1 4.7280 -5.0991 -3.9638 47 1 3.1267 -3.4582 -1.5220 48 1 3.3445 -3.3067 -3.2959 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521790913.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:46 Heat of formation + Delta-G solvation = -84.227698 kcal Electronic energy + Delta-G solvation = -26648.638736 eV Core-core repulsion = 22828.943867 eV Total energy + Delta-G solvation = -3819.694869 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.52696 -40.64772 -39.43329 -37.61115 -35.94029 -34.60084 -33.89894 -32.02627 -30.50918 -29.55703 -27.76105 -27.39641 -27.06593 -24.59417 -23.00923 -21.97582 -21.59591 -20.94175 -20.11985 -19.82594 -18.39422 -17.86874 -17.53202 -17.12310 -16.89235 -16.79376 -16.48803 -15.88628 -15.68598 -15.34117 -14.92080 -14.88025 -14.55146 -14.50968 -14.14573 -14.03613 -13.87672 -13.74974 -13.55839 -13.19095 -13.17016 -13.05589 -12.87907 -12.87172 -12.65313 -12.63038 -12.34703 -11.95787 -11.87074 -11.71633 -11.61851 -11.37931 -11.14487 -11.08241 -10.97335 -10.87408 -10.30797 -10.18133 -9.79299 -8.69019 -8.36020 -6.14620 1.24798 1.37979 1.42778 1.45029 1.55065 1.57121 1.83549 2.23228 2.27035 2.80534 2.97854 3.27516 3.32535 3.46304 3.59532 3.67508 3.74705 3.82429 3.95638 4.11400 4.12465 4.25075 4.30657 4.32744 4.39363 4.47741 4.50967 4.58075 4.62546 4.65897 4.72256 4.81310 4.83042 4.88015 4.92816 4.95864 5.04090 5.12309 5.18643 5.20184 5.33803 5.38526 5.39931 5.40417 5.52168 6.18037 6.44235 6.45476 7.04863 7.05651 7.19560 8.73023 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.001993 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.065403 B =14047.914746 C =15070.022110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.133 4.133 3 H 0.086 0.914 4 C -0.139 4.139 5 C -0.185 4.185 6 H 0.155 0.845 7 C 0.548 3.452 8 O -0.595 6.595 9 N -0.619 5.619 10 C 0.101 3.899 11 C -0.094 4.094 12 H 0.122 0.878 13 C 0.132 3.868 14 N -0.714 5.714 15 C 0.533 3.467 16 O -0.566 6.566 17 C -0.131 4.131 18 S -0.152 6.152 19 C -0.548 4.548 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.264 1.264 25 H -0.278 1.278 26 H -0.260 1.260 27 C -0.093 4.093 28 H 0.078 0.922 29 C -0.138 4.138 30 C 0.104 3.896 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.137 0.863 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.416 0.584 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.271 0.729 44 H 0.056 0.944 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.104 0.896 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.367 -9.990 -3.795 35.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.151 4.151 3 H 0.104 0.896 4 C -0.176 4.176 5 C -0.206 4.206 6 H 0.172 0.828 7 C 0.338 3.662 8 O -0.477 6.477 9 N -0.351 5.351 10 C -0.022 4.022 11 C -0.114 4.114 12 H 0.140 0.860 13 C 0.008 3.992 14 N -0.368 5.368 15 C 0.319 3.681 16 O -0.445 6.445 17 C -0.282 4.282 18 S 0.076 5.924 19 C -0.696 4.696 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.821 3.179 24 H -0.188 1.188 25 H -0.203 1.203 26 H -0.185 1.185 27 C -0.113 4.113 28 H 0.096 0.904 29 C -0.195 4.195 30 C -0.017 4.017 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.155 0.845 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.253 0.747 41 H 0.132 0.868 42 H 0.124 0.876 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.122 0.878 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -33.481 -10.278 -1.930 35.076 hybrid contribution 0.887 1.803 -1.701 2.633 sum -32.594 -8.475 -3.631 33.873 Atomic orbital electron populations 1.21385 0.89840 1.03431 1.02691 1.22424 0.96897 0.93932 1.01897 0.89620 1.23191 1.02696 1.01730 0.90001 1.22320 0.95943 1.06147 0.96182 0.82752 1.20064 0.85480 0.83146 0.77470 1.90705 1.70222 1.23165 1.63578 1.48797 1.23725 1.11846 1.50743 1.22192 0.85308 0.97708 0.97010 1.22420 0.92309 0.94357 1.02281 0.85959 1.21437 0.88401 0.94425 0.94916 1.45773 1.11019 1.50249 1.29738 1.20067 0.82905 0.80797 0.84325 1.90688 1.77686 1.49861 1.26235 1.23383 0.98321 1.02709 1.03777 1.85561 1.05605 1.63647 1.37635 1.23174 1.00494 1.33128 1.12785 0.89915 1.26150 0.97752 0.97985 0.97329 1.70179 1.13950 1.43895 1.26704 0.84992 0.76767 0.78085 0.78076 1.18826 1.20291 1.18479 1.22214 0.93346 0.95259 1.00495 0.90384 1.21733 1.02790 0.94108 1.00877 1.22879 0.97182 0.77400 1.04252 0.90376 0.91414 0.91611 0.84519 0.90295 0.89897 0.93241 0.93857 0.91037 0.74745 0.86825 0.87641 0.91960 0.92455 0.90754 0.90804 0.87796 0.88176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 10.19 71.98 0.73 -0.25 16 2 C -0.13 -1.96 5.92 -10.79 -0.06 -2.03 16 3 H 0.09 1.82 7.67 -2.39 -0.02 1.80 16 4 C -0.14 -1.74 9.88 30.59 0.30 -1.44 16 5 C -0.19 -2.58 4.98 -11.54 -0.06 -2.64 16 6 H 0.15 1.10 7.62 -2.39 -0.02 1.08 16 7 C 0.55 12.34 7.67 87.66 0.67 13.02 16 8 O -0.60 -19.84 16.59 -3.04 -0.05 -19.89 16 9 N -0.62 -10.52 3.29 -810.04 -2.67 -13.18 16 10 C 0.10 1.77 6.31 86.53 0.55 2.31 16 11 C -0.09 -1.21 2.64 -9.91 -0.03 -1.24 16 12 H 0.12 1.02 7.86 -2.39 -0.02 1.00 16 13 C 0.13 2.87 4.76 86.38 0.41 3.28 16 14 N -0.71 -18.25 5.29 -463.06 -2.45 -20.70 16 15 C 0.53 20.27 7.85 87.66 0.69 20.96 16 16 O -0.57 -27.03 15.86 -3.02 -0.05 -27.08 16 17 C -0.13 -5.34 6.16 71.24 0.44 -4.90 16 18 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 19 C -0.55 -31.92 9.50 67.95 0.65 -31.28 16 20 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 21 C 0.01 0.73 5.49 84.86 0.47 1.20 16 22 N -0.91 -56.85 13.22 21.65 0.29 -56.56 16 23 Si 1.00 44.32 29.55 68.60 2.03 46.35 16 24 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 27 C -0.09 -0.85 3.18 -9.69 -0.03 -0.88 16 28 H 0.08 0.92 7.86 -2.39 -0.02 0.90 16 29 C -0.14 -0.72 9.17 71.98 0.66 -0.06 16 30 C 0.10 0.80 6.27 86.62 0.54 1.35 16 31 H 0.08 0.37 7.90 -2.39 -0.02 0.35 16 32 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.14 0.85 8.05 -2.39 -0.02 0.83 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.05 1.23 7.49 -2.39 -0.02 1.21 16 38 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.42 7.77 8.32 -92.71 -0.77 7.00 16 41 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 42 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 43 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 44 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.07 0.24 8.14 -2.38 -0.02 0.22 16 46 H 0.07 0.22 8.11 -2.39 -0.02 0.20 16 47 H 0.10 0.45 7.17 -2.39 -0.02 0.43 16 48 H 0.10 0.38 8.02 -2.38 -0.02 0.36 16 Total: -1.00 -87.86 409.26 2.04 -85.82 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.18 Total: 17.64 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 5.93 Total: -2.60 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -4.83 Total: -90.44 kcal Atomic # 8 Polarization: -46.87 SS G_CDS: -0.10 Total: -46.97 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -87.86 2.04 -85.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521790913.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.589 kcal (2) G-P(sol) polarization free energy of solvation -87.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds