Wall clock time and date at job start Sat Apr 11 2020 06:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 115.56061 * 2 1 4 4 C 1.53077 * 117.51020 * 145.69520 * 2 1 3 5 5 C 1.53000 * 117.49754 * 214.30622 * 2 1 3 6 6 H 1.09000 * 117.49511 * 145.00078 * 5 2 1 7 7 C 1.50696 * 117.49959 * 359.97438 * 5 2 1 8 8 O 1.21279 * 120.00148 * 0.09235 * 7 5 2 9 9 N 1.34783 * 119.99989 * 180.08647 * 7 5 2 10 10 C 1.46497 * 119.99877 * 180.02562 * 9 7 5 11 11 C 1.52999 * 109.46800 * 180.02562 * 10 9 7 12 12 C 1.53045 * 109.46050 * 175.00297 * 11 10 9 13 13 C 1.53189 * 109.31325 * 181.36991 * 12 11 10 14 14 N 1.46922 * 108.77695 * 305.36606 * 13 12 11 15 15 C 1.34775 * 120.62617 * 233.58304 * 14 13 12 16 16 O 1.21282 * 120.00577 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99768 * 179.97438 * 15 14 13 18 18 S 1.81002 * 109.47349 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00182 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99976 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99949 * 179.97438 * 19 18 17 22 22 N 1.31630 * 119.99849 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00065 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46692 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46740 * 119.99825 * 23 21 19 26 26 H 1.48497 * 109.47025 * 240.00183 * 23 21 19 27 27 C 1.46919 * 118.74229 * 53.86062 * 14 13 12 28 28 C 1.53043 * 109.45020 * 295.06026 * 11 10 9 29 29 H 1.08998 * 109.47581 * 205.69064 * 1 2 3 30 30 H 1.08999 * 109.47477 * 325.69031 * 1 2 3 31 31 H 1.09001 * 109.47193 * 85.69058 * 1 2 3 32 32 H 1.08993 * 117.51681 * 0.02562 * 4 2 1 33 33 H 1.09000 * 117.49365 * 214.95685 * 4 2 1 34 34 H 0.96998 * 119.99497 * 0.02562 * 9 7 5 35 35 H 1.08999 * 109.47333 * 60.00582 * 10 9 7 36 36 H 1.08999 * 109.47644 * 300.00158 * 10 9 7 37 37 H 1.09000 * 109.46563 * 55.03115 * 11 10 9 38 38 H 1.08999 * 109.49530 * 61.41832 * 12 11 10 39 39 H 1.09002 * 109.49602 * 301.32179 * 12 11 10 40 40 H 1.09005 * 109.58664 * 185.57289 * 13 12 11 41 41 H 1.09001 * 109.70039 * 65.22215 * 13 12 11 42 42 H 1.09005 * 109.46867 * 60.00428 * 17 15 14 43 43 H 1.09000 * 109.47235 * 300.00468 * 17 15 14 44 44 H 0.97005 * 119.99878 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.59008 * 65.92480 * 27 14 13 46 46 H 1.08998 * 109.58753 * 186.35286 * 27 14 13 47 47 H 1.09001 * 109.50181 * 298.57608 * 28 11 10 48 48 H 1.09007 * 109.49675 * 58.67381 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2370 -1.1215 0.7652 5 6 2.2364 -1.1211 -0.7649 6 1 3.1713 -0.8751 -1.2685 7 6 1.3720 -2.1410 -1.4601 8 8 0.1638 -2.0530 -1.4016 9 7 1.9415 -3.1511 -2.1472 10 6 1.1012 -4.1424 -2.8235 11 6 1.9902 -5.1725 -3.5229 12 6 1.1164 -6.2760 -4.1237 13 6 2.0118 -7.3231 -4.7934 14 7 2.8839 -6.6483 -5.7643 15 6 2.9344 -7.0624 -7.0458 16 8 2.2556 -8.0002 -7.4073 17 6 3.8335 -6.3595 -8.0300 18 16 3.6790 -7.1426 -9.6545 19 6 4.8039 -6.1515 -10.5802 20 1 5.3354 -5.3444 -10.0981 21 6 5.0078 -6.4089 -11.9289 22 7 4.3604 -7.3930 -12.5163 23 14 6.1999 -5.3577 -12.9105 24 1 6.7945 -4.3251 -12.0244 25 1 7.2784 -6.2166 -13.4621 26 1 5.4747 -4.6965 -14.0249 27 6 3.7045 -5.5173 -5.3102 28 6 2.7859 -4.4869 -4.6360 29 1 -0.3634 -0.9260 0.4455 30 1 -0.3634 0.8488 0.5792 31 1 -0.3633 0.0772 -1.0248 32 1 1.6123 -1.8595 1.2682 33 1 3.1723 -0.8756 1.2680 34 1 2.9078 -3.2216 -2.1937 35 1 0.4730 -3.6434 -3.5614 36 1 0.4707 -4.6453 -2.0902 37 1 2.6793 -5.6084 -2.7995 38 1 0.4441 -5.8445 -4.8652 39 1 0.5326 -6.7483 -3.3336 40 1 1.3927 -8.0584 -5.3075 41 1 2.6212 -7.8217 -4.0396 42 1 4.8671 -6.4273 -7.6904 43 1 3.5431 -5.3114 -8.1031 44 1 4.5027 -7.5726 -13.4589 45 1 4.4491 -5.8695 -4.5963 46 1 4.2026 -5.0607 -6.1655 47 1 2.0979 -4.0722 -5.3727 48 1 3.3905 -3.6857 -4.2106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001523264722.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:55 Heat of formation + Delta-G solvation = -59.959920 kcal Electronic energy + Delta-G solvation = -26670.306823 eV Core-core repulsion = 22851.664284 eV Total energy + Delta-G solvation = -3818.642539 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.59880 -39.93367 -37.94975 -36.88263 -35.16256 -32.96389 -32.44623 -31.48280 -29.41649 -28.91965 -27.44425 -25.51865 -24.62614 -23.58065 -22.75723 -21.44934 -20.98395 -20.18731 -19.07297 -17.75352 -17.49754 -16.72687 -16.31808 -15.91257 -15.62258 -15.43752 -15.25953 -14.82325 -14.58970 -14.28857 -14.09592 -13.96091 -13.51271 -13.47577 -13.39696 -12.97903 -12.90307 -12.79194 -12.66117 -12.53019 -12.24777 -11.91065 -11.89346 -11.47127 -11.23084 -11.08815 -11.03941 -10.86364 -10.84896 -10.75871 -10.69615 -10.51853 -9.87743 -9.81011 -9.40376 -9.37277 -9.09244 -8.56284 -8.23849 -6.51999 -6.23497 -3.94129 2.15613 2.75172 2.91619 3.03002 3.19961 3.24558 3.29463 3.35889 3.57668 4.16275 4.18079 4.28114 4.33671 4.37138 4.39345 4.47205 4.67986 4.83792 4.91239 4.95974 5.03908 5.10565 5.11732 5.19883 5.21569 5.29999 5.34203 5.41286 5.46022 5.48826 5.52984 5.62347 5.63260 5.64202 5.66847 5.75659 5.81944 5.85344 5.91126 6.00890 6.08504 6.11858 6.20624 6.61856 7.13136 7.52869 7.58029 7.90135 8.33388 8.53955 9.21866 10.83948 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016477 B = 0.001939 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.974644 B =14435.514980 C =15629.005569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.119 4.119 3 H 0.111 0.889 4 C -0.152 4.152 5 C -0.196 4.196 6 H 0.123 0.877 7 C 0.541 3.459 8 O -0.534 6.534 9 N -0.726 5.726 10 C 0.125 3.875 11 C -0.098 4.098 12 C -0.126 4.126 13 C 0.114 3.886 14 N -0.621 5.621 15 C 0.535 3.465 16 O -0.517 6.517 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.108 3.892 28 C -0.131 4.131 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.400 0.600 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.073 0.927 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.003 11.844 27.783 30.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.137 4.137 3 H 0.129 0.871 4 C -0.189 4.189 5 C -0.217 4.217 6 H 0.141 0.859 7 C 0.328 3.672 8 O -0.411 6.411 9 N -0.378 5.378 10 C 0.001 3.999 11 C -0.117 4.117 12 C -0.165 4.165 13 C -0.009 4.009 14 N -0.357 5.357 15 C 0.323 3.677 16 O -0.391 6.391 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.205 1.205 27 C -0.015 4.015 28 C -0.169 4.169 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.235 0.765 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.109 0.891 47 H 0.092 0.908 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.938 10.386 27.093 29.281 hybrid contribution 2.261 1.757 -0.309 2.880 sum -1.677 12.143 26.784 29.455 Atomic orbital electron populations 1.21366 0.91399 1.01452 1.02696 1.22396 0.96679 0.93567 1.01093 0.87092 1.23100 1.03134 1.01989 0.90681 1.22304 1.02200 1.01348 0.95861 0.85928 1.19680 0.88143 0.81152 0.78255 1.90720 1.14576 1.74708 1.61120 1.46005 1.10521 1.27803 1.53483 1.21427 0.93151 0.89138 0.96147 1.21396 0.97532 0.95538 0.97203 1.21891 0.97994 0.96134 1.00439 1.21482 0.92966 0.94984 0.91452 1.48104 1.44530 1.33807 1.09289 1.20339 0.82311 0.83509 0.81552 1.90692 1.43067 1.28099 1.77242 1.23553 1.01012 1.03604 1.01932 1.85422 1.58409 1.43955 0.95702 1.22894 1.28886 1.19448 0.97067 0.90911 1.24999 0.96330 0.95566 0.96728 1.70029 1.40107 1.28299 1.11778 0.86116 0.80088 0.79730 0.79559 1.19629 1.20563 1.20550 1.21786 0.92863 0.86768 1.00093 1.22093 0.99113 0.97759 0.97982 0.91795 0.93217 0.91317 0.88244 0.87800 0.76497 0.91223 0.91359 0.90249 0.90911 0.90491 0.88674 0.91865 0.89322 0.89312 0.92223 0.91483 0.89072 0.90827 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 8.43 37.16 0.31 -0.60 16 2 C -0.12 -0.77 6.41 -90.58 -0.58 -1.35 16 3 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 4 C -0.15 -0.82 9.88 -26.69 -0.26 -1.08 16 5 C -0.20 -1.23 6.19 -91.77 -0.57 -1.80 16 6 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 7 C 0.54 4.78 7.59 -10.98 -0.08 4.70 16 8 O -0.53 -6.60 13.10 5.56 0.07 -6.53 16 9 N -0.73 -4.92 5.27 -60.30 -0.32 -5.24 16 10 C 0.12 0.95 5.06 -4.04 -0.02 0.93 16 11 C -0.10 -0.67 2.19 -90.58 -0.20 -0.87 16 12 C -0.13 -1.07 5.36 -26.61 -0.14 -1.21 16 13 C 0.11 1.27 6.43 -3.71 -0.02 1.25 16 14 N -0.62 -8.31 2.97 -172.51 -0.51 -8.82 16 15 C 0.53 9.99 7.72 -10.98 -0.08 9.90 16 16 O -0.52 -11.71 15.28 5.56 0.08 -11.63 16 17 C -0.15 -3.01 4.50 36.01 0.16 -2.85 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.53 -15.11 9.50 30.94 0.29 -14.82 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.05 13.22 55.49 0.73 -25.31 16 23 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.11 1.05 6.37 -3.49 -0.02 1.03 16 28 C -0.13 -1.00 5.26 -26.38 -0.14 -1.14 16 29 H 0.06 0.60 7.02 -51.93 -0.36 0.24 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.68 7.26 -51.93 -0.38 0.30 16 32 H 0.10 0.61 8.05 -51.93 -0.42 0.19 16 33 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.40 1.76 7.65 -40.82 -0.31 1.45 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.09 1.27 7.01 -51.93 -0.36 0.91 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 1.63 7.93 -51.91 -0.41 1.22 16 43 H 0.09 1.64 7.70 -51.92 -0.40 1.24 16 44 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 0.94 5.93 -51.93 -0.31 0.64 16 47 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.07 0.41 7.15 -51.92 -0.37 0.04 16 LS Contribution 397.18 15.07 5.99 5.99 Total: -1.00 -35.82 397.18 -10.58 -46.41 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.94 Total: -1.29 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -1.45 Total: -5.93 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: -0.10 Total: -39.37 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: 0.16 Total: -18.15 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.82 -10.58 -46.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523264722.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.553 kcal (2) G-P(sol) polarization free energy of solvation -35.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds