Wall clock time and date at job start Sat Apr 11 2020 06:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47371 * 2 1 4 4 O 1.21277 * 120.00164 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99837 * 180.02562 * 3 2 1 6 6 C 1.47069 * 120.84182 * 354.77034 * 5 3 2 7 7 C 1.53128 * 109.05115 * 126.60857 * 6 5 3 8 8 C 1.53147 * 109.61095 * 54.00493 * 7 6 5 9 9 C 1.52820 * 109.25708 * 299.14336 * 8 7 6 10 10 H 1.09004 * 109.46421 * 302.01869 * 9 8 7 11 11 C 1.52624 * 110.42030 * 181.62467 * 9 8 7 12 12 N 1.47071 * 108.55706 * 184.63835 * 11 9 8 13 13 C 1.34778 * 120.47492 * 233.30631 * 12 11 9 14 14 O 1.21284 * 119.99987 * 359.71736 * 13 12 11 15 15 C 1.50706 * 120.00043 * 179.71897 * 13 12 11 16 16 S 1.80994 * 109.47038 * 179.97438 * 15 13 12 17 17 C 1.76205 * 99.99983 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99524 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00126 * 180.27960 * 17 16 15 20 20 N 1.31630 * 119.99797 * 359.71766 * 19 17 16 21 21 Si 1.86794 * 120.00029 * 179.72569 * 19 17 16 22 22 H 1.48501 * 109.47401 * 59.99510 * 21 19 17 23 23 H 1.48501 * 109.47258 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46815 * 299.99550 * 21 19 17 25 25 C 1.46865 * 119.05071 * 53.02368 * 12 11 9 26 26 C 1.53308 * 109.11381 * 307.61199 * 25 12 11 27 27 C 1.46724 * 120.84193 * 174.80045 * 5 3 2 28 28 H 1.09000 * 109.53935 * 114.49617 * 27 5 3 29 29 H 1.09003 * 109.46517 * 59.99936 * 1 2 3 30 30 H 1.08997 * 109.47461 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47111 * 300.00832 * 1 2 3 32 32 H 1.09002 * 109.47111 * 239.99168 * 2 1 3 33 33 H 1.09003 * 109.46517 * 120.00064 * 2 1 3 34 34 H 1.08993 * 109.54105 * 246.48443 * 6 5 3 35 35 H 1.09000 * 109.53985 * 6.74119 * 6 5 3 36 36 H 1.09005 * 109.44731 * 174.04297 * 7 6 5 37 37 H 1.08998 * 109.45087 * 293.95749 * 7 6 5 38 38 H 1.09001 * 109.50479 * 59.07124 * 8 7 6 39 39 H 1.08992 * 109.51462 * 179.20706 * 8 7 6 40 40 H 1.09008 * 109.62176 * 64.83483 * 11 9 8 41 41 H 1.08998 * 109.54321 * 304.39321 * 11 9 8 42 42 H 1.08994 * 109.46765 * 59.99684 * 15 13 12 43 43 H 1.08998 * 109.46769 * 299.99456 * 15 13 12 44 44 H 0.97000 * 120.00126 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.52796 * 67.49976 * 25 12 11 46 46 H 1.08998 * 109.53034 * 187.64524 * 25 12 11 47 47 H 1.08999 * 109.55746 * 173.93617 * 26 25 12 48 48 H 1.09005 * 109.55760 * 294.24684 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2444 2.3426 -0.0005 5 7 3.3575 1.6669 -0.0005 6 6 4.3285 0.5683 0.1140 7 6 5.3255 0.6597 -1.0447 8 6 5.9507 2.0573 -1.0758 9 6 4.8510 3.0968 -1.2890 10 1 4.3218 2.8805 -2.2171 11 6 5.4505 4.4984 -1.3646 12 7 4.3526 5.4726 -1.4574 13 6 4.3286 6.3827 -2.4512 14 8 5.2192 6.4056 -3.2742 15 6 3.1952 7.3720 -2.5398 16 16 3.4477 8.4524 -3.9698 17 6 2.0209 9.4775 -3.8345 18 1 1.3175 9.3204 -3.0303 19 6 1.7979 10.4828 -4.7652 20 7 2.6551 10.6739 -5.7457 21 14 0.2814 11.5645 -4.6263 22 1 0.3003 12.2786 -3.3244 23 1 0.2763 12.5544 -5.7332 24 1 -0.9378 10.7208 -4.7104 25 6 3.2796 5.4355 -0.4553 26 6 2.7178 4.0114 -0.3740 27 6 3.8678 3.0378 -0.1147 28 1 4.3788 3.3146 0.8075 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 1.8933 -0.5140 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 4.8616 0.6503 1.0611 35 1 3.8052 -0.3868 0.0702 36 1 6.1093 -0.0856 -0.9086 37 1 4.8071 0.4729 -1.9851 38 1 6.4561 2.2511 -0.1297 39 1 6.6703 2.1161 -1.8923 40 1 6.0870 4.5772 -2.2460 41 1 6.0386 4.6922 -0.4676 42 1 3.1660 7.9733 -1.6312 43 1 2.2528 6.8357 -2.6511 44 1 2.4991 11.3762 -6.3963 45 1 3.6785 5.7259 0.5166 46 1 2.4868 6.1252 -0.7447 47 1 1.9966 3.9497 0.4410 48 1 2.2297 3.7573 -1.3150 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525219933.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:01 Heat of formation + Delta-G solvation = -66.168591 kcal Electronic energy + Delta-G solvation = -28279.156874 eV Core-core repulsion = 24460.245107 eV Total energy + Delta-G solvation = -3818.911768 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.21330 -39.48171 -37.94138 -36.07601 -33.62539 -33.39950 -32.38997 -31.92755 -30.58857 -29.05286 -26.09655 -25.78849 -25.32512 -23.78186 -23.30189 -21.67467 -20.77481 -19.26246 -19.00711 -17.64275 -17.15831 -16.78134 -16.21937 -16.02885 -15.58713 -15.25336 -15.04322 -14.76621 -14.60122 -14.35994 -14.02956 -13.89612 -13.49220 -13.38933 -13.03419 -13.00859 -12.92266 -12.58157 -12.43798 -12.29743 -12.04504 -11.85762 -11.70488 -11.61437 -11.49456 -11.25891 -11.06568 -11.00541 -11.00169 -10.97098 -10.72107 -10.69853 -9.76938 -9.46216 -9.25173 -9.01980 -8.87385 -8.38568 -8.18587 -6.45829 -6.17629 -3.87938 2.35273 2.61802 2.97558 3.11961 3.26947 3.29259 3.32477 3.64541 4.09351 4.24472 4.28510 4.41625 4.49270 4.58436 4.65668 4.73381 4.78627 4.82861 4.97746 4.98859 5.07813 5.17355 5.18291 5.23194 5.27834 5.31598 5.37491 5.43249 5.48615 5.53822 5.59094 5.61079 5.69753 5.71124 5.75055 5.84072 5.92219 5.93902 6.01864 6.11590 6.18385 6.18978 6.44407 6.70091 7.11474 7.60553 7.63785 7.94765 8.39289 8.61176 9.27562 10.89809 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015488 B = 0.002707 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.465912 B =10340.372498 C =11668.745094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.145 4.145 3 C 0.513 3.487 4 O -0.528 6.528 5 N -0.612 5.612 6 C 0.107 3.893 7 C -0.135 4.135 8 C -0.113 4.113 9 C -0.114 4.114 10 H 0.079 0.921 11 C 0.123 3.877 12 N -0.621 5.621 13 C 0.536 3.464 14 O -0.519 6.519 15 C -0.150 4.150 16 S -0.062 6.062 17 C -0.534 4.534 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.869 5.869 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.101 3.899 26 C -0.126 4.126 27 C 0.153 3.847 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.064 0.936 46 H 0.093 0.907 47 H 0.108 0.892 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.161 -25.877 16.306 30.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.185 4.185 3 C 0.302 3.698 4 O -0.404 6.404 5 N -0.346 5.346 6 C -0.016 4.016 7 C -0.173 4.173 8 C -0.151 4.151 9 C -0.134 4.134 10 H 0.098 0.902 11 C -0.001 4.001 12 N -0.357 5.357 13 C 0.324 3.676 14 O -0.394 6.394 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.504 5.504 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.023 4.023 26 C -0.164 4.164 27 C 0.050 3.950 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.115 0.885 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.111 0.889 47 H 0.126 0.874 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.094 -25.229 14.920 29.595 hybrid contribution -1.856 0.515 1.045 2.191 sum 2.238 -24.714 15.965 29.507 Atomic orbital electron populations 1.21540 0.92909 1.01538 1.03536 1.21703 0.98725 0.94192 1.03891 1.20786 0.81600 0.91833 0.75613 1.90725 1.55414 1.45154 1.49153 1.48198 1.05588 1.07559 1.73246 1.21770 0.90973 0.89926 0.98915 1.21911 0.98664 0.97771 0.98952 1.21482 0.97396 0.93571 1.02654 1.21863 0.96788 0.95431 0.99368 0.90237 1.21380 0.89519 0.85957 1.03223 1.48172 1.24876 1.33673 1.28980 1.20344 0.86986 0.80589 0.79706 1.90678 1.38265 1.71001 1.39454 1.23555 0.99035 1.00474 1.07028 1.85357 1.33755 1.35231 1.29185 1.22829 1.09632 1.19623 1.16175 0.90983 1.24986 0.97360 0.96740 0.94478 1.70011 1.35165 1.31567 1.13647 0.86228 0.81829 0.79581 0.77896 1.19930 1.20834 1.19918 1.21976 0.90280 0.98348 0.91657 1.22536 0.96547 0.92015 1.05292 1.21255 0.95201 0.80972 0.97584 0.90923 0.91825 0.92191 0.91943 0.89091 0.89222 0.91178 0.89640 0.90412 0.91320 0.91435 0.90929 0.88541 0.91778 0.89261 0.89228 0.92172 0.91747 0.88917 0.87382 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.20 37.16 0.34 -0.64 16 2 C -0.15 -0.91 4.78 -27.88 -0.13 -1.04 16 3 C 0.51 5.00 7.58 -10.99 -0.08 4.92 16 4 O -0.53 -7.00 11.65 5.56 0.06 -6.94 16 5 N -0.61 -5.13 2.97 -165.32 -0.49 -5.62 16 6 C 0.11 0.54 6.35 -3.67 -0.02 0.52 16 7 C -0.13 -0.72 6.07 -26.59 -0.16 -0.88 16 8 C -0.11 -0.79 5.24 -26.75 -0.14 -0.93 16 9 C -0.11 -1.14 2.19 -90.76 -0.20 -1.34 16 10 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 11 C 0.12 1.50 5.74 -3.92 -0.02 1.48 16 12 N -0.62 -9.34 2.98 -172.97 -0.52 -9.85 16 13 C 0.54 10.67 7.71 -10.98 -0.08 10.59 16 14 O -0.52 -12.19 15.27 5.55 0.08 -12.10 16 15 C -0.15 -3.22 4.50 36.01 0.16 -3.06 16 16 S -0.06 -1.73 20.57 -107.50 -2.21 -3.95 16 17 C -0.53 -15.60 9.50 30.94 0.29 -15.30 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 20 N -0.87 -26.65 13.22 55.49 0.73 -25.92 16 21 Si 0.92 21.86 29.55 -169.99 -5.02 16.84 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 C 0.10 1.27 6.33 -3.68 -0.02 1.25 16 26 C -0.13 -1.51 3.82 -26.63 -0.10 -1.61 16 27 C 0.15 1.49 2.64 -67.72 -0.18 1.31 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 32 H 0.09 0.45 7.91 -51.93 -0.41 0.04 16 33 H 0.09 0.38 7.74 -51.93 -0.40 -0.03 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.09 0.28 5.96 -51.93 -0.31 -0.03 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.10 1.36 7.01 -51.92 -0.36 1.00 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.77 7.95 -51.92 -0.41 1.36 16 43 H 0.09 1.82 7.67 -51.92 -0.40 1.42 16 44 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.09 1.23 5.91 -51.93 -0.31 0.93 16 47 H 0.11 1.37 6.11 -51.93 -0.32 1.06 16 48 H 0.07 1.08 7.46 -51.93 -0.39 0.69 16 LS Contribution 382.14 15.07 5.76 5.76 Total: -1.00 -36.04 382.14 -9.97 -46.01 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -7.92 Total: -1.54 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -0.45 Total: -2.70 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: -0.27 Total: -41.39 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.15 Total: -19.04 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.04 -9.97 -46.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525219933.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.154 kcal (2) G-P(sol) polarization free energy of solvation -36.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds