Wall clock time and date at job start Sat Apr 11 2020 06:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50706 * 109.47049 * 2 1 4 4 O 1.21286 * 119.99821 * 359.97438 * 3 2 1 5 5 N 1.34770 * 120.00034 * 180.02562 * 3 2 1 6 6 C 1.46953 * 120.84825 * 359.97051 * 5 3 2 7 7 C 1.53194 * 109.03472 * 234.05220 * 6 5 3 8 8 C 1.53123 * 109.45712 * 305.94750 * 7 6 5 9 9 C 1.52853 * 109.36457 * 60.63507 * 8 7 6 10 10 H 1.09002 * 109.25849 * 57.49439 * 9 8 7 11 11 C 1.52775 * 110.20531 * 176.76238 * 9 8 7 12 12 N 1.46890 * 109.18654 * 67.31985 * 11 9 8 13 13 C 1.34780 * 120.76868 * 233.31524 * 12 11 9 14 14 O 1.21275 * 120.00353 * 0.02832 * 13 12 11 15 15 C 1.50698 * 120.00090 * 180.02562 * 13 12 11 16 16 S 1.80998 * 109.47575 * 180.02562 * 15 13 12 17 17 C 1.76200 * 100.00360 * 180.02562 * 16 15 13 18 18 H 1.08003 * 120.00002 * 0.02562 * 17 16 15 19 19 C 1.38796 * 119.99822 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99776 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00208 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47295 * 89.99660 * 21 19 17 23 23 H 1.48498 * 109.47066 * 209.99394 * 21 19 17 24 24 H 1.48495 * 109.47025 * 329.99289 * 21 19 17 25 25 C 1.46965 * 118.46185 * 53.34303 * 12 11 9 26 26 C 1.53103 * 108.62269 * 305.69484 * 25 12 11 27 27 C 1.47307 * 120.85090 * 179.97438 * 5 3 2 28 28 H 1.09002 * 110.68874 * 4.49513 * 27 5 3 29 29 H 1.08995 * 109.47402 * 60.00655 * 1 2 3 30 30 H 1.09006 * 109.47396 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47604 * 300.00190 * 1 2 3 32 32 H 1.08992 * 109.47491 * 239.99521 * 2 1 3 33 33 H 1.09001 * 109.47024 * 119.99147 * 2 1 3 34 34 H 1.08994 * 109.54642 * 353.91832 * 6 5 3 35 35 H 1.08997 * 109.54257 * 114.10665 * 6 5 3 36 36 H 1.08999 * 109.50645 * 185.93421 * 7 6 5 37 37 H 1.08999 * 109.46353 * 65.92894 * 7 6 5 38 38 H 1.09002 * 109.49166 * 300.65980 * 8 7 6 39 39 H 1.08996 * 109.49124 * 180.60669 * 8 7 6 40 40 H 1.08994 * 109.52128 * 187.23453 * 11 9 8 41 41 H 1.09000 * 109.51298 * 307.40980 * 11 9 8 42 42 H 1.09000 * 109.47708 * 300.00606 * 15 13 12 43 43 H 1.09004 * 109.47317 * 59.99993 * 15 13 12 44 44 H 0.96996 * 120.00248 * 180.02562 * 20 19 17 45 45 H 1.08996 * 109.61625 * 185.95096 * 25 12 11 46 46 H 1.09000 * 109.61115 * 65.43187 * 25 12 11 47 47 H 1.09002 * 109.44880 * 295.31089 * 26 25 12 48 48 H 1.08998 * 109.43502 * 175.36154 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3573 1.6672 -0.0005 6 6 4.3287 0.5645 -0.0004 7 6 5.2973 0.7520 1.1715 8 6 5.9217 2.1482 1.0988 9 6 4.8186 3.2022 1.1910 10 1 4.2605 3.0586 2.1162 11 6 5.4272 4.6035 1.2010 12 7 6.0400 4.8730 -0.1065 13 6 7.3230 5.2758 -0.1967 14 8 7.9858 5.4193 0.8088 15 6 7.9341 5.5481 -1.5470 16 16 9.6553 6.0673 -1.3369 17 6 10.1089 6.3123 -3.0218 18 1 9.3872 6.1382 -3.8061 19 6 11.3935 6.7300 -3.3408 20 7 11.7326 6.9125 -4.5996 21 14 12.6416 7.0318 -1.9842 22 1 13.3857 5.7767 -1.7079 23 1 13.5938 8.0874 -2.4134 24 1 11.9376 7.4712 -0.7527 25 6 5.2216 4.6938 -1.3139 26 6 4.6395 3.2777 -1.3043 27 6 3.8689 3.0486 -0.0011 28 1 3.0493 3.7627 0.0789 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.8034 -0.3843 0.1089 35 1 4.8842 0.5679 -0.9382 36 1 6.0835 -0.0010 1.1179 37 1 4.7554 0.6449 2.1112 38 1 6.4536 2.2599 0.1539 39 1 6.6191 2.2782 1.9263 40 1 4.6462 5.3384 1.3956 41 1 6.1879 4.6645 1.9793 42 1 7.8998 4.6413 -2.1510 43 1 7.3742 6.3386 -2.0466 44 1 12.6304 7.2041 -4.8226 45 1 5.8421 4.8283 -2.1998 46 1 4.4109 5.4224 -1.3179 47 1 5.4493 2.5520 -1.3797 48 1 3.9641 3.1575 -2.1512 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525219946.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:07 Heat of formation + Delta-G solvation = -78.312359 kcal Electronic energy + Delta-G solvation = -28337.006376 eV Core-core repulsion = 24517.568015 eV Total energy + Delta-G solvation = -3819.438361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.23464 -39.66972 -38.13638 -35.88319 -33.59777 -33.21765 -32.45626 -31.97752 -31.00055 -29.25699 -26.12698 -25.94072 -25.55576 -23.84077 -23.05263 -22.70405 -20.42300 -19.34677 -18.32076 -17.71862 -17.55807 -16.97802 -16.19530 -16.11446 -15.67228 -15.55133 -15.09870 -14.97865 -14.47982 -14.25741 -14.04633 -13.83382 -13.76084 -13.54354 -13.19311 -13.13230 -12.93949 -12.80213 -12.61541 -12.47874 -12.14134 -12.00294 -11.78004 -11.63990 -11.56106 -11.34039 -11.25366 -11.02760 -10.99563 -10.96936 -10.61483 -10.50544 -10.03920 -9.87317 -9.49617 -9.02060 -8.92754 -8.62440 -8.50660 -6.93776 -6.30494 -4.02344 2.32301 2.57130 2.69056 2.92949 3.17451 3.31518 3.49148 3.57147 4.07178 4.27185 4.31470 4.42973 4.46651 4.56084 4.60888 4.66322 4.69893 4.71744 4.79953 4.86634 4.99051 5.04319 5.08586 5.11987 5.17770 5.23755 5.36808 5.38199 5.40493 5.50191 5.53299 5.55500 5.57829 5.60118 5.68615 5.72819 5.74074 5.84834 5.90296 5.93396 5.96900 6.13912 6.18258 6.53045 7.08243 7.43779 7.86732 7.92505 8.39740 8.41667 9.15712 10.78708 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024348 B = 0.002463 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.734526 B =11367.657778 C =11580.192371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.514 3.486 4 O -0.542 6.542 5 N -0.610 5.610 6 C 0.104 3.896 7 C -0.134 4.134 8 C -0.115 4.115 9 C -0.108 4.108 10 H 0.081 0.919 11 C 0.120 3.880 12 N -0.617 5.617 13 C 0.535 3.465 14 O -0.518 6.518 15 C -0.122 4.122 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.111 3.889 26 C -0.146 4.146 27 C 0.149 3.851 28 H 0.104 0.896 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.271 0.729 45 H 0.095 0.905 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.405 -16.079 9.857 27.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.184 4.184 3 C 0.303 3.697 4 O -0.419 6.419 5 N -0.343 5.343 6 C -0.018 4.018 7 C -0.172 4.172 8 C -0.153 4.153 9 C -0.128 4.128 10 H 0.100 0.900 11 C -0.003 4.003 12 N -0.353 5.353 13 C 0.323 3.677 14 O -0.393 6.393 15 C -0.272 4.272 16 S 0.084 5.916 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.013 4.013 26 C -0.185 4.185 27 C 0.046 3.954 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.113 0.887 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.709 -15.327 11.211 27.369 hybrid contribution -0.002 -0.133 -0.970 0.979 sum -19.711 -15.460 10.241 27.064 Atomic orbital electron populations 1.21537 0.92995 1.01567 1.03390 1.21668 0.98613 0.93971 1.04126 1.20795 0.81542 0.91899 0.75504 1.90699 1.54757 1.46633 1.49850 1.48373 1.05461 1.07122 1.73316 1.21784 0.91173 0.89503 0.99385 1.21928 0.98754 0.98137 0.98354 1.21558 0.97230 0.93027 1.03448 1.21739 0.96673 0.95751 0.98656 0.90046 1.21448 0.98097 0.94376 0.86427 1.48060 1.11542 1.68793 1.06891 1.20266 0.80473 0.75699 0.91226 1.90686 1.60196 1.50590 1.37815 1.23310 1.02268 1.04976 0.96673 1.84796 1.05482 1.87966 1.13380 1.22303 1.01669 1.53019 0.89835 0.89412 1.24713 0.97501 0.93516 0.95594 1.69936 1.20411 1.44621 1.16698 0.86735 0.82186 0.79300 0.83635 1.19229 1.19949 1.15921 1.21693 0.95402 0.95903 0.88349 1.22314 1.00518 0.97918 0.97719 1.21259 0.96284 0.83386 0.94450 0.87831 0.91949 0.92096 0.92016 0.88956 0.89009 0.89697 0.90956 0.90412 0.91558 0.90991 0.91172 0.91490 0.88432 0.88639 0.88516 0.91937 0.88688 0.90994 0.90503 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.20 37.15 0.34 -0.55 16 2 C -0.14 -0.86 4.77 -27.88 -0.13 -0.99 16 3 C 0.51 4.89 7.71 -10.99 -0.08 4.80 16 4 O -0.54 -7.27 15.46 5.55 0.09 -7.19 16 5 N -0.61 -5.06 2.66 -164.84 -0.44 -5.50 16 6 C 0.10 0.63 5.85 -3.69 -0.02 0.61 16 7 C -0.13 -0.87 6.08 -26.57 -0.16 -1.04 16 8 C -0.12 -1.05 4.85 -26.74 -0.13 -1.18 16 9 C -0.11 -1.00 2.45 -90.71 -0.22 -1.22 16 10 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 11 C 0.12 1.34 5.82 -3.95 -0.02 1.32 16 12 N -0.62 -7.94 2.62 -173.08 -0.45 -8.39 16 13 C 0.54 9.33 7.72 -10.98 -0.08 9.25 16 14 O -0.52 -10.88 15.29 5.56 0.09 -10.79 16 15 C -0.12 -2.31 4.51 36.00 0.16 -2.15 16 16 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 17 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 18 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 19 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 20 N -0.88 -26.36 13.97 55.49 0.78 -25.58 16 21 Si 0.86 21.63 27.74 -169.99 -4.72 16.92 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 25 C 0.11 1.14 6.34 -3.74 -0.02 1.11 16 26 C -0.15 -1.31 5.02 -26.61 -0.13 -1.45 16 27 C 0.15 1.38 2.63 -67.33 -0.18 1.21 16 28 H 0.10 1.13 7.10 -51.93 -0.37 0.76 16 29 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 32 H 0.09 0.40 7.94 -51.93 -0.41 -0.01 16 33 H 0.09 0.39 7.71 -51.93 -0.40 -0.01 16 34 H 0.08 0.33 5.96 -51.93 -0.31 0.02 16 35 H 0.07 0.44 7.25 -51.93 -0.38 0.06 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.77 6.15 -51.93 -0.32 0.45 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 1.25 7.01 -51.93 -0.36 0.89 16 42 H 0.10 1.68 7.71 -51.92 -0.40 1.28 16 43 H 0.10 1.73 7.94 -51.91 -0.41 1.32 16 44 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.09 1.00 5.95 -51.93 -0.31 0.69 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.08 0.71 5.32 -51.93 -0.28 0.44 16 48 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 379.45 15.07 5.72 5.72 Total: -1.00 -34.84 379.45 -9.16 -44.01 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -7.75 Total: -1.52 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -0.48 Total: -2.11 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: -0.12 Total: -39.47 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.17 Total: -17.98 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.72 Total: 16.92 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.84 -9.16 -44.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525219946.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.307 kcal (2) G-P(sol) polarization free energy of solvation -34.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds