Wall clock time and date at job start Sat Apr 11 2020 06:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.47029 * 2 1 4 4 O 1.21280 * 119.99848 * 0.02562 * 3 2 1 5 5 N 1.34784 * 119.99852 * 179.97438 * 3 2 1 6 6 C 1.47059 * 120.83982 * 354.55604 * 5 3 2 7 7 C 1.53129 * 109.05726 * 233.43237 * 6 5 3 8 8 C 1.53149 * 109.60815 * 306.00878 * 7 6 5 9 9 C 1.52816 * 109.26227 * 60.84930 * 8 7 6 10 10 H 1.09000 * 109.46154 * 57.98191 * 9 8 7 11 11 C 1.53488 * 110.29010 * 178.63159 * 9 8 7 12 12 N 1.47075 * 108.09246 * 175.63267 * 11 9 8 13 13 C 1.34775 * 120.47687 * 126.64744 * 12 11 9 14 14 O 1.21283 * 119.99717 * 359.72548 * 13 12 11 15 15 C 1.50698 * 120.00334 * 179.72010 * 13 12 11 16 16 S 1.80991 * 109.47474 * 180.02562 * 15 13 12 17 17 C 1.76200 * 100.00404 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99495 * 0.02562 * 17 16 15 19 19 C 1.38792 * 120.00385 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00415 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99945 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47270 * 269.99604 * 21 19 17 23 23 H 1.48500 * 109.47190 * 29.99626 * 21 19 17 24 24 H 1.48496 * 109.47391 * 149.99475 * 21 19 17 25 25 C 1.46871 * 119.04736 * 306.37595 * 12 11 9 26 26 C 1.53314 * 109.11266 * 52.90074 * 25 12 11 27 27 C 1.46712 * 120.83825 * 174.57844 * 5 3 2 28 28 H 1.09000 * 109.54054 * 245.46009 * 27 5 3 29 29 H 1.08999 * 109.47346 * 59.99883 * 1 2 3 30 30 H 1.08998 * 109.47281 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47368 * 299.99928 * 1 2 3 32 32 H 1.09006 * 109.47584 * 240.00511 * 2 1 3 33 33 H 1.08999 * 109.47346 * 120.00117 * 2 1 3 34 34 H 1.08996 * 109.54262 * 353.30804 * 6 5 3 35 35 H 1.08999 * 109.53878 * 113.56308 * 6 5 3 36 36 H 1.09001 * 109.44114 * 66.04395 * 7 6 5 37 37 H 1.08999 * 109.44940 * 185.96107 * 7 6 5 38 38 H 1.09003 * 109.50394 * 180.78590 * 8 7 6 39 39 H 1.08995 * 109.50342 * 300.91284 * 8 7 6 40 40 H 1.08997 * 109.84595 * 55.98092 * 11 9 8 41 41 H 1.08998 * 109.77223 * 295.24328 * 11 9 8 42 42 H 1.09000 * 109.47129 * 60.00122 * 15 13 12 43 43 H 1.09000 * 109.47417 * 300.00681 * 15 13 12 44 44 H 0.96999 * 120.00025 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.52867 * 172.78644 * 25 12 11 46 46 H 1.08994 * 109.53051 * 292.93437 * 25 12 11 47 47 H 1.09000 * 109.55769 * 65.74677 * 26 25 12 48 48 H 1.09000 * 109.55346 * 185.95923 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3574 1.6672 0.0005 6 6 4.3282 0.5691 0.1209 7 6 5.2852 0.8723 1.2772 8 6 5.9133 2.2545 1.0757 9 6 4.8101 3.3119 1.0587 10 1 4.2487 3.2659 1.9919 11 6 5.4172 4.7117 0.8918 12 7 4.3138 5.6772 0.7759 13 6 4.2589 6.7530 1.5859 14 8 5.1207 6.9277 2.4212 15 6 3.1268 7.7388 1.4537 16 16 3.3339 9.0622 2.6709 17 6 1.9157 10.0410 2.3032 18 1 1.2394 9.7379 1.5176 19 6 1.6671 11.2009 3.0237 20 7 0.6079 11.9324 2.7487 21 14 2.8364 11.7247 4.3830 22 1 2.3984 11.1274 5.6702 23 1 4.2091 11.2578 4.0624 24 1 2.8313 13.2052 4.4972 25 6 3.2758 5.4554 -0.2392 26 6 2.7125 4.0384 -0.0799 27 6 3.8677 3.0375 -0.1185 28 1 4.4110 3.1440 -1.0574 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 3.8007 -0.3638 0.3193 35 1 4.8940 0.4794 -0.8065 36 1 4.7341 0.8578 2.2176 37 1 6.0708 0.1173 1.3057 38 1 6.6046 2.4627 1.8923 39 1 6.4516 2.2749 0.1281 40 1 6.0298 4.7443 -0.0091 41 1 6.0281 4.9548 1.7612 42 1 2.1791 7.2294 1.6281 43 1 3.1311 8.1646 0.4503 44 1 0.4339 12.7428 3.2525 45 1 2.4750 6.1829 -0.1065 46 1 3.7085 5.5671 -1.2333 47 1 2.1917 3.9579 0.8742 48 1 2.0183 3.8282 -0.8936 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525219947.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:10 Heat of formation + Delta-G solvation = -66.404511 kcal Electronic energy + Delta-G solvation = -28315.925581 eV Core-core repulsion = 24497.003584 eV Total energy + Delta-G solvation = -3818.921998 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.23567 -39.55577 -37.97855 -36.13707 -33.65286 -33.41915 -32.40197 -31.97210 -30.63272 -29.17465 -26.11942 -25.82178 -25.46857 -23.80067 -23.35668 -21.72892 -20.83171 -19.26976 -19.10386 -17.66136 -17.13112 -16.85829 -16.21786 -16.11705 -15.65443 -15.37294 -15.10789 -14.91326 -14.65257 -14.31399 -14.02751 -13.80239 -13.58557 -13.44860 -13.08798 -13.05532 -12.96939 -12.76063 -12.47933 -12.36409 -12.07964 -11.96014 -11.76435 -11.69030 -11.51529 -11.28406 -11.22511 -11.10897 -10.97716 -10.96176 -10.73722 -10.53468 -9.82401 -9.53666 -9.37547 -8.96804 -8.88700 -8.45573 -8.44196 -6.87742 -6.25100 -3.96495 2.34402 2.58871 2.75573 2.99345 3.23263 3.36072 3.53334 3.62798 4.07401 4.24986 4.36349 4.38222 4.47454 4.54249 4.63504 4.68804 4.72097 4.76276 4.82551 4.94176 5.04356 5.08485 5.13869 5.16467 5.19988 5.26401 5.28417 5.35327 5.41432 5.46723 5.51802 5.60175 5.63405 5.65726 5.70427 5.77843 5.81835 5.91625 5.97047 6.05764 6.08929 6.14217 6.43086 6.61319 7.09205 7.50581 7.92823 7.98118 8.46033 8.48438 9.21135 10.84226 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016918 B = 0.002724 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.656697 B =10275.160777 C =11392.038248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.145 4.145 3 C 0.511 3.489 4 O -0.526 6.526 5 N -0.613 5.613 6 C 0.107 3.893 7 C -0.135 4.135 8 C -0.113 4.113 9 C -0.114 4.114 10 H 0.080 0.920 11 C 0.123 3.877 12 N -0.619 5.619 13 C 0.534 3.466 14 O -0.522 6.522 15 C -0.121 4.121 16 S -0.144 6.144 17 C -0.519 4.519 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.235 1.235 24 H -0.275 1.275 25 C 0.099 3.901 26 C -0.119 4.119 27 C 0.152 3.848 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.270 0.730 45 H 0.094 0.906 46 H 0.065 0.935 47 H 0.081 0.919 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.088 -29.674 -9.361 32.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.185 4.185 3 C 0.300 3.700 4 O -0.402 6.402 5 N -0.347 5.347 6 C -0.015 4.015 7 C -0.173 4.173 8 C -0.151 4.151 9 C -0.134 4.134 10 H 0.098 0.902 11 C -0.001 4.001 12 N -0.355 5.355 13 C 0.322 3.678 14 O -0.397 6.397 15 C -0.272 4.272 16 S 0.082 5.918 17 C -0.667 4.667 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.518 5.518 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.159 1.159 24 H -0.200 1.200 25 C -0.025 4.025 26 C -0.157 4.157 27 C 0.049 3.951 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.112 0.888 46 H 0.084 0.916 47 H 0.100 0.900 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.808 -28.748 -8.094 31.137 hybrid contribution -0.643 0.075 -0.417 0.770 sum 8.165 -28.673 -8.511 31.004 Atomic orbital electron populations 1.21540 0.92889 1.01546 1.03574 1.21704 0.98736 0.94156 1.03867 1.20799 0.81588 0.91863 0.75764 1.90772 1.55374 1.45246 1.48836 1.48190 1.05623 1.07520 1.73321 1.21760 0.91153 0.89653 0.98980 1.21909 0.98904 0.97733 0.98745 1.21485 0.97355 0.93609 1.02682 1.22017 0.96943 0.94881 0.99579 0.90155 1.21582 0.89183 0.86187 1.03118 1.48133 1.26164 1.24575 1.36596 1.20305 0.86586 0.80966 0.79900 1.90675 1.39956 1.74366 1.34672 1.23310 0.99398 0.99216 1.05245 1.84746 1.37175 1.23587 1.46271 1.22315 1.09329 1.10758 1.24282 0.89383 1.24710 0.94982 0.94966 0.96668 1.69942 1.26121 1.15132 1.40590 0.86733 0.83654 0.78673 0.82776 1.19238 1.15921 1.19977 1.22024 0.91016 0.98384 0.91087 1.22448 0.96058 0.91493 1.05700 1.21267 0.95363 0.80842 0.97604 0.90904 0.91895 0.92188 0.91840 0.89150 0.89182 0.89648 0.91215 0.91341 0.90386 0.90973 0.91426 0.91610 0.88541 0.88488 0.88505 0.91974 0.88818 0.91645 0.90046 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.20 37.16 0.34 -0.63 16 2 C -0.14 -0.88 4.84 -27.88 -0.13 -1.01 16 3 C 0.51 4.89 7.62 -10.98 -0.08 4.81 16 4 O -0.53 -6.96 11.53 5.56 0.06 -6.90 16 5 N -0.61 -4.98 2.97 -165.32 -0.49 -5.47 16 6 C 0.11 0.52 6.32 -3.67 -0.02 0.50 16 7 C -0.13 -0.69 6.07 -26.59 -0.16 -0.85 16 8 C -0.11 -0.75 5.24 -26.75 -0.14 -0.89 16 9 C -0.11 -1.09 2.22 -90.32 -0.20 -1.29 16 10 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 11 C 0.12 1.43 5.80 -3.48 -0.02 1.41 16 12 N -0.62 -8.88 2.97 -172.44 -0.51 -9.39 16 13 C 0.53 10.14 7.71 -10.99 -0.08 10.06 16 14 O -0.52 -11.62 15.27 5.55 0.08 -11.54 16 15 C -0.12 -2.49 4.50 36.00 0.16 -2.33 16 16 S -0.14 -3.78 18.55 -107.50 -1.99 -5.77 16 17 C -0.52 -15.32 10.04 30.94 0.31 -15.01 16 18 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 19 C 0.10 2.84 5.50 -17.43 -0.10 2.75 16 20 N -0.88 -27.10 13.97 55.49 0.78 -26.32 16 21 Si 0.86 22.23 27.74 -169.99 -4.71 17.51 16 22 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.24 -6.09 6.74 56.52 0.38 -5.71 16 24 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 25 C 0.10 1.19 6.32 -3.68 -0.02 1.17 16 26 C -0.12 -1.39 3.79 -26.62 -0.10 -1.49 16 27 C 0.15 1.42 2.64 -67.73 -0.18 1.25 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.55 8.10 -51.93 -0.42 0.12 16 32 H 0.09 0.38 8.12 -51.93 -0.42 -0.05 16 33 H 0.09 0.41 7.47 -51.93 -0.39 0.02 16 34 H 0.09 0.26 6.00 -51.93 -0.31 -0.05 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.10 1.29 7.00 -51.93 -0.36 0.93 16 42 H 0.10 1.91 7.67 -51.92 -0.40 1.51 16 43 H 0.10 1.86 7.95 -51.92 -0.41 1.45 16 44 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 45 H 0.09 1.21 5.91 -51.93 -0.31 0.90 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.08 1.18 7.15 -51.93 -0.37 0.81 16 48 H 0.10 1.20 6.46 -51.93 -0.34 0.87 16 LS Contribution 379.45 15.07 5.72 5.72 Total: -1.00 -35.80 379.45 -9.46 -45.26 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -7.96 Total: -1.52 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -0.43 Total: -1.58 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: -0.23 Total: -41.18 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.15 Total: -18.43 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.51 kcal Atomic # 16 Polarization: -3.78 SS G_CDS: -1.99 Total: -5.77 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.80 -9.46 -45.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525219947.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.145 kcal (2) G-P(sol) polarization free energy of solvation -35.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds