Wall clock time and date at job start Sat Apr 11 2020 06:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 115.56180 * 2 1 4 4 C 1.52997 * 117.49848 * 214.30462 * 2 1 3 5 5 C 1.53000 * 60.00153 * 252.51320 * 4 2 1 6 6 H 1.09000 * 117.51456 * 107.47881 * 5 4 2 7 7 C 1.50698 * 117.50197 * 252.50899 * 5 4 2 8 8 O 1.21280 * 119.99650 * 68.61794 * 7 5 4 9 9 N 1.34775 * 119.99899 * 248.62705 * 7 5 4 10 10 C 1.46510 * 119.99594 * 179.97438 * 9 7 5 11 11 C 1.52998 * 109.46666 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.49918 * 54.99831 * 11 10 9 13 13 C 1.53036 * 109.49372 * 175.06311 * 11 10 9 14 14 C 1.53046 * 109.53927 * 181.34583 * 13 11 10 15 15 C 1.53189 * 109.31336 * 298.63505 * 14 13 11 16 16 N 1.46935 * 108.77418 * 54.63373 * 15 14 13 17 17 C 1.34776 * 120.63153 * 126.36927 * 16 15 14 18 18 O 1.21277 * 119.99745 * 179.97438 * 17 16 15 19 19 C 1.50701 * 119.99631 * 359.97438 * 17 16 15 20 20 S 1.81010 * 109.46821 * 180.02562 * 19 17 16 21 21 C 1.76196 * 99.99944 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00066 * 359.97438 * 21 20 19 23 23 C 1.38795 * 120.00112 * 179.97438 * 21 20 19 24 24 N 1.31639 * 119.99924 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00278 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47009 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47196 * 120.00188 * 25 23 21 28 28 H 1.48501 * 109.47404 * 239.99990 * 25 23 21 29 29 C 1.46996 * 118.75211 * 306.39315 * 16 15 14 30 30 H 1.08997 * 109.47480 * 274.31921 * 1 2 3 31 31 H 1.09004 * 109.46366 * 34.31435 * 1 2 3 32 32 H 1.08998 * 109.46894 * 154.31396 * 1 2 3 33 33 H 1.09000 * 117.50243 * 145.02325 * 4 2 1 34 34 H 1.09004 * 117.50058 * 0.02562 * 4 2 1 35 35 H 0.96992 * 120.00561 * 359.97438 * 9 7 5 36 36 H 1.08991 * 109.47061 * 59.99156 * 10 9 7 37 37 H 1.09000 * 109.46874 * 299.99329 * 10 9 7 38 38 H 1.08997 * 109.46472 * 301.36555 * 13 11 10 39 39 H 1.09003 * 109.46560 * 61.34241 * 13 11 10 40 40 H 1.09001 * 109.49287 * 58.58732 * 14 13 11 41 41 H 1.09004 * 109.49898 * 178.64868 * 14 13 11 42 42 H 1.09001 * 109.58579 * 174.41761 * 15 14 13 43 43 H 1.08995 * 109.58826 * 294.84578 * 15 14 13 44 44 H 1.09001 * 109.47252 * 299.99468 * 19 17 16 45 45 H 1.09001 * 109.47367 * 60.00310 * 19 17 16 46 46 H 0.97001 * 120.00028 * 179.97438 * 24 23 21 47 47 H 1.09004 * 109.57815 * 293.82544 * 29 16 15 48 48 H 1.09007 * 109.62790 * 173.38404 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1211 -0.7649 5 6 2.2364 -1.1210 0.7651 6 1 1.6111 -1.8582 1.2687 7 6 3.5292 -0.7811 1.4610 8 8 3.9718 0.3465 1.4013 9 7 4.1936 -1.7303 2.1496 10 6 5.4507 -1.4000 2.8256 11 6 5.9945 -2.6456 3.5282 12 1 6.0892 -3.4577 2.8073 13 6 7.3665 -2.3344 4.1303 14 6 7.9263 -3.5892 4.8043 15 6 6.9875 -4.0178 5.9364 16 7 5.6324 -4.1789 5.3916 17 6 4.9518 -5.3281 5.5722 18 8 3.8338 -5.4484 5.1179 19 6 5.5801 -6.4633 6.3387 20 16 4.4261 -7.8561 6.4078 21 6 5.3897 -9.0063 7.3314 22 1 6.3809 -8.7358 7.6643 23 6 4.8750 -10.2599 7.6312 24 7 3.6670 -10.5898 7.2251 25 14 5.8963 -11.4791 8.6110 26 1 7.2082 -10.8693 8.9460 27 1 5.1802 -11.8308 9.8635 28 1 6.1121 -12.7062 7.8030 29 6 5.0331 -3.0632 4.6453 30 1 -0.3634 0.0774 1.0247 31 1 -0.3632 0.8489 -0.5794 32 1 -0.3633 -0.9261 -0.4454 33 1 3.1716 -0.8754 -1.2682 34 1 1.6112 -1.8584 -1.2684 35 1 3.8396 -2.6320 2.1976 36 1 5.2722 -0.6166 3.5621 37 1 6.1768 -1.0502 2.0918 38 1 8.0454 -2.0130 3.3404 39 1 7.2670 -1.5393 4.8692 40 1 8.0029 -4.3924 4.0714 41 1 8.9139 -3.3734 5.2121 42 1 7.3281 -4.9650 6.3547 43 1 6.9803 -3.2541 6.7140 44 1 6.4967 -6.7760 5.8385 45 1 5.8130 -6.1333 7.3511 46 1 3.3074 -11.4661 7.4343 47 1 4.8666 -2.2216 5.3177 48 1 4.0846 -3.3803 4.2117 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525951776.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:28 Heat of formation + Delta-G solvation = -65.311589 kcal Electronic energy + Delta-G solvation = -26799.930846 eV Core-core repulsion = 22981.056241 eV Total energy + Delta-G solvation = -3818.874605 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.47145 -39.87848 -37.79444 -36.98433 -35.21085 -32.98387 -32.45926 -31.58698 -29.55338 -29.00734 -26.58565 -25.62516 -25.09583 -23.98929 -22.22229 -21.16161 -20.98413 -20.03105 -19.13490 -17.83854 -17.54719 -16.75076 -16.30918 -16.12536 -15.37897 -15.30477 -14.86112 -14.83422 -14.81969 -14.36914 -14.04742 -13.97192 -13.62260 -13.44646 -13.31413 -13.10260 -13.08159 -12.83056 -12.65682 -12.35623 -12.10562 -11.95115 -11.75224 -11.40182 -11.16249 -11.09647 -11.06841 -10.99989 -10.84853 -10.76557 -10.70304 -10.42905 -10.02436 -9.82570 -9.41667 -9.33624 -9.10558 -8.58161 -8.26063 -6.53783 -6.25020 -3.95742 2.25109 2.84421 2.87262 2.98921 3.19047 3.23372 3.28535 3.49328 3.54890 4.16827 4.31463 4.34829 4.42682 4.45294 4.46311 4.53260 4.76082 4.83585 4.92784 4.97325 4.98340 5.08543 5.10344 5.26136 5.28953 5.33346 5.38435 5.38544 5.42579 5.45118 5.54170 5.60035 5.61224 5.63081 5.71054 5.74613 5.80291 5.83510 5.88258 5.97435 6.06352 6.08172 6.17803 6.56066 7.23399 7.49503 7.56797 7.97716 8.32106 8.49566 9.20529 10.82437 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014620 B = 0.002174 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.674442 B =12877.754529 C =14475.080845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 H 0.116 0.884 4 C -0.148 4.148 5 C -0.194 4.194 6 H 0.126 0.874 7 C 0.545 3.455 8 O -0.545 6.545 9 N -0.726 5.726 10 C 0.128 3.872 11 C -0.116 4.116 12 H 0.084 0.916 13 C -0.110 4.110 14 C -0.135 4.135 15 C 0.106 3.894 16 N -0.620 5.620 17 C 0.536 3.464 18 O -0.518 6.518 19 C -0.151 4.151 20 S -0.062 6.062 21 C -0.534 4.534 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 C 0.118 3.882 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.406 0.594 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.268 0.732 47 H 0.065 0.935 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.845 20.449 -11.384 23.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.140 4.140 3 H 0.134 0.866 4 C -0.186 4.186 5 C -0.216 4.216 6 H 0.144 0.856 7 C 0.331 3.669 8 O -0.423 6.423 9 N -0.378 5.378 10 C 0.004 3.996 11 C -0.135 4.135 12 H 0.102 0.898 13 C -0.148 4.148 14 C -0.173 4.173 15 C -0.017 4.017 16 N -0.356 5.356 17 C 0.324 3.676 18 O -0.392 6.392 19 C -0.301 4.301 20 S 0.165 5.835 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 C -0.005 4.005 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.241 0.759 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.368 20.925 -12.076 24.275 hybrid contribution 1.933 -1.209 1.323 2.636 sum 4.301 19.717 -10.753 22.866 Atomic orbital electron populations 1.21415 0.92126 1.02307 1.02352 1.22375 0.95321 0.94958 1.01347 0.86566 1.23108 1.03131 1.01604 0.90738 1.22338 0.97766 1.05556 0.95894 0.85612 1.19668 0.84615 0.84532 0.78045 1.90685 1.68753 1.21117 1.61715 1.46006 1.24699 1.13874 1.53228 1.21360 0.85243 0.96829 0.96151 1.21812 0.96264 0.97618 0.97854 0.89791 1.21473 0.95005 0.98071 1.00240 1.21919 0.98781 0.98092 0.98510 1.21747 0.81551 1.02784 0.95639 1.48106 1.16738 1.14631 1.56124 1.20351 0.85541 0.82290 0.79447 1.90680 1.18833 1.80657 1.49070 1.23555 1.05160 0.99498 1.01892 1.85395 1.20381 1.05398 1.72323 1.22893 1.04008 1.01240 1.40127 0.90888 1.24999 0.95314 0.97469 0.95841 1.70029 1.15205 1.21347 1.43674 0.86115 0.79759 0.80240 0.79372 1.19609 1.20556 1.20555 1.21551 0.96948 0.89075 0.92920 0.91824 0.91679 0.92206 0.88350 0.87634 0.75917 0.91147 0.91106 0.91299 0.91327 0.91161 0.90403 0.89099 0.91439 0.89259 0.89266 0.92221 0.91650 0.89024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 10.19 37.16 0.38 -0.42 16 2 C -0.12 -0.99 5.92 -90.62 -0.54 -1.52 16 3 H 0.12 1.10 7.67 -51.93 -0.40 0.70 16 4 C -0.15 -1.10 9.88 -26.73 -0.26 -1.36 16 5 C -0.19 -1.68 5.91 -91.77 -0.54 -2.22 16 6 H 0.13 0.94 8.14 -51.93 -0.42 0.51 16 7 C 0.54 5.96 7.61 -10.99 -0.08 5.87 16 8 O -0.55 -7.79 16.26 5.56 0.09 -7.70 16 9 N -0.73 -6.74 5.33 -60.29 -0.32 -7.06 16 10 C 0.13 1.12 5.07 -4.04 -0.02 1.10 16 11 C -0.12 -1.00 2.37 -90.51 -0.21 -1.21 16 12 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 13 C -0.11 -0.80 5.17 -26.69 -0.14 -0.94 16 14 C -0.13 -1.07 6.08 -26.61 -0.16 -1.24 16 15 C 0.11 1.07 6.34 -3.71 -0.02 1.05 16 16 N -0.62 -8.24 2.97 -172.71 -0.51 -8.76 16 17 C 0.54 9.78 7.72 -10.99 -0.08 9.69 16 18 O -0.52 -11.31 15.28 5.56 0.08 -11.22 16 19 C -0.15 -2.97 4.50 36.01 0.16 -2.81 16 20 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 21 C -0.53 -14.99 9.50 30.94 0.29 -14.69 16 22 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 24 N -0.87 -25.86 13.22 55.49 0.73 -25.12 16 25 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 29 C 0.12 1.32 5.52 -3.67 -0.02 1.30 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.34 7.90 -51.93 -0.41 -0.07 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.11 0.62 8.05 -51.93 -0.42 0.20 16 35 H 0.41 3.38 7.70 -40.82 -0.31 3.07 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.96 5.93 -51.93 -0.31 0.65 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 1.63 7.69 -51.91 -0.40 1.23 16 45 H 0.09 1.64 7.94 -51.92 -0.41 1.23 16 46 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.09 1.16 6.21 -51.92 -0.32 0.84 16 LS Contribution 402.84 15.07 6.07 6.07 Total: -1.00 -35.25 402.84 -10.47 -45.71 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -8.02 Total: 1.26 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.35 Total: -5.43 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: -0.10 Total: -40.94 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: 0.18 Total: -18.92 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.25 -10.47 -45.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525951776.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.600 kcal (2) G-P(sol) polarization free energy of solvation -35.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds