Wall clock time and date at job start Sat Apr 11 2020 06:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 115.56038 * 2 1 4 4 C 1.53074 * 117.49208 * 214.29066 * 2 1 3 5 5 C 1.52996 * 117.49686 * 145.68818 * 2 1 3 6 6 H 1.09001 * 117.49934 * 359.97438 * 5 2 1 7 7 C 1.53001 * 117.49721 * 214.98031 * 5 2 1 8 8 C 1.50698 * 109.47032 * 175.08723 * 7 5 2 9 9 O 1.21278 * 120.00213 * 5.06745 * 8 7 5 10 10 N 1.34777 * 120.00221 * 185.05947 * 8 7 5 11 11 C 1.46498 * 120.00505 * 185.04642 * 10 8 7 12 12 C 1.52999 * 109.47167 * 270.00444 * 11 10 8 13 13 N 1.46499 * 109.47433 * 179.97438 * 12 11 10 14 14 C 1.34778 * 120.00157 * 179.97438 * 13 12 11 15 15 O 1.21275 * 119.99788 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.99771 * 180.02562 * 14 13 12 17 17 S 1.81005 * 109.46834 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99835 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00132 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00043 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99979 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99884 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.46916 * 89.99813 * 22 20 18 24 24 H 1.48499 * 109.46689 * 209.99301 * 22 20 18 25 25 H 1.48490 * 109.47027 * 329.99600 * 22 20 18 26 26 C 1.46499 * 119.99684 * 5.05090 * 10 8 7 27 27 C 1.53005 * 117.49947 * 114.12830 * 26 10 8 28 28 C 1.53003 * 60.03283 * 107.50414 * 27 26 10 29 29 H 1.09000 * 109.47335 * 274.31057 * 1 2 3 30 30 H 1.09006 * 109.47555 * 34.31258 * 1 2 3 31 31 H 1.09003 * 109.47168 * 154.30754 * 1 2 3 32 32 H 1.08998 * 117.50839 * 145.04042 * 4 2 1 33 33 H 1.09001 * 117.51723 * 359.97438 * 4 2 1 34 34 H 1.09002 * 109.47066 * 55.08880 * 7 5 2 35 35 H 1.09005 * 109.47012 * 295.08444 * 7 5 2 36 36 H 1.08995 * 109.47151 * 30.00378 * 11 10 8 37 37 H 1.09001 * 109.47096 * 150.00630 * 11 10 8 38 38 H 1.09004 * 109.47249 * 299.99932 * 12 11 10 39 39 H 1.09003 * 109.47153 * 59.99347 * 12 11 10 40 40 H 0.97003 * 119.99862 * 0.02562 * 13 12 11 41 41 H 1.08995 * 109.47406 * 300.00010 * 16 14 13 42 42 H 1.09005 * 109.47447 * 60.00326 * 16 14 13 43 43 H 0.97005 * 119.99737 * 180.02562 * 21 20 18 44 44 H 1.09004 * 115.56541 * 328.44409 * 26 10 8 45 45 H 1.08996 * 117.49776 * 359.97438 * 27 26 10 46 46 H 1.09006 * 117.49738 * 215.00508 * 27 26 10 47 47 H 1.08999 * 117.50009 * 107.48025 * 28 27 26 48 48 H 1.08995 * 117.49603 * 252.47701 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2366 -1.1219 -0.7650 5 6 2.2364 -1.1210 0.7650 6 1 1.6111 -1.8582 1.2687 7 6 3.5489 -0.7759 1.4715 8 6 4.0227 -1.9684 2.2617 9 8 3.4253 -3.0213 2.1874 10 7 5.1104 -1.8651 3.0508 11 6 5.6364 -3.0505 3.7322 12 6 4.9709 -3.1880 5.1030 13 7 5.4964 -4.3737 5.7843 14 6 5.0519 -4.6961 7.0152 15 8 4.2166 -4.0049 7.5585 16 6 5.5930 -5.9155 7.7161 17 16 4.8055 -6.0783 9.3377 18 6 5.6007 -7.5394 9.9186 19 1 6.3317 -8.0388 9.3000 20 6 5.2876 -8.0487 11.1713 21 7 5.8812 -9.1405 11.6051 22 14 4.0227 -7.1853 12.2410 23 1 2.6736 -7.7357 11.9543 24 1 4.3527 -7.4044 13.6722 25 1 4.0364 -5.7299 11.9469 26 6 5.7667 -0.5672 3.2271 27 6 5.7281 0.0602 4.6221 28 6 7.0346 -0.5265 4.0839 29 1 -0.3634 0.0772 1.0247 30 1 -0.3634 0.8488 -0.5793 31 1 -0.3634 -0.9261 -0.4455 32 1 3.1719 -0.8766 -1.2682 33 1 1.6116 -1.8599 -1.2678 34 1 3.3885 0.0659 2.1452 35 1 4.3017 -0.5093 0.7296 36 1 5.4243 -3.9371 3.1348 37 1 6.7140 -2.9478 3.8602 38 1 5.1830 -2.3014 5.7005 39 1 3.8932 -3.2906 4.9751 40 1 6.1648 -4.9264 5.3498 41 1 5.3806 -6.8022 7.1188 42 1 6.6707 -5.8131 7.8438 43 1 5.6621 -9.4966 12.4804 44 1 5.7160 0.1057 2.3711 45 1 5.2140 -0.4924 5.4084 46 1 5.6516 1.1458 4.6837 47 1 7.8175 0.1730 3.7911 48 1 7.3806 -1.4652 4.5165 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001529704634.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:31 Heat of formation + Delta-G solvation = -24.949639 kcal Electronic energy + Delta-G solvation = -26454.706059 eV Core-core repulsion = 22637.581679 eV Total energy + Delta-G solvation = -3817.124380 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.72897 -39.23914 -38.43459 -37.55918 -35.12943 -33.48283 -32.42974 -31.48527 -30.14455 -28.56263 -27.35936 -25.60457 -23.78538 -23.08833 -22.56424 -21.63814 -20.79708 -20.50841 -19.25117 -17.97155 -17.84107 -16.80465 -16.39956 -16.14191 -15.60733 -15.42715 -15.29411 -15.15857 -14.94360 -14.64367 -14.19167 -13.87051 -13.80061 -13.47902 -13.39950 -13.07842 -12.82748 -12.77505 -12.57314 -12.42367 -12.29824 -12.00680 -11.79477 -11.70003 -11.47833 -11.27734 -11.25596 -11.07497 -10.99803 -10.60936 -10.38832 -10.29640 -10.00217 -9.85086 -9.55545 -9.02585 -8.97998 -8.95522 -8.49280 -6.90999 -6.28134 -3.99811 2.18725 2.32570 2.82096 2.97634 3.31680 3.33037 3.34688 3.38431 3.51445 3.68995 3.95309 4.23664 4.25511 4.33935 4.34964 4.42714 4.43295 4.57745 4.65080 4.74123 4.79379 4.87912 4.94000 5.00974 5.02679 5.10940 5.21741 5.27218 5.29011 5.32495 5.39237 5.41727 5.45366 5.49552 5.59152 5.65353 5.69842 5.77811 5.82637 5.85278 5.98438 6.01491 6.06178 6.49117 6.94174 7.57538 7.79928 7.94926 8.42379 8.48145 9.18084 10.81031 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017048 B = 0.001943 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.019586 B =14409.877956 C =15146.178143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.153 4.153 3 H 0.103 0.897 4 C -0.173 4.173 5 C -0.138 4.138 6 H 0.118 0.882 7 C -0.107 4.107 8 C 0.521 3.479 9 O -0.525 6.525 10 N -0.585 5.585 11 C 0.101 3.899 12 C 0.106 3.894 13 N -0.735 5.735 14 C 0.532 3.468 15 O -0.518 6.518 16 C -0.123 4.123 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.064 3.936 27 C -0.193 4.193 28 C -0.181 4.181 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.400 0.600 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.271 0.729 44 H 0.132 0.868 45 H 0.104 0.896 46 H 0.104 0.896 47 H 0.106 0.894 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.153 22.632 -26.078 34.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.171 4.171 3 H 0.121 0.879 4 C -0.210 4.210 5 C -0.157 4.157 6 H 0.136 0.864 7 C -0.146 4.146 8 C 0.310 3.690 9 O -0.400 6.400 10 N -0.318 5.318 11 C -0.022 4.022 12 C -0.020 4.020 13 N -0.390 5.390 14 C 0.318 3.682 15 O -0.392 6.392 16 C -0.274 4.274 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.040 4.040 27 C -0.231 4.231 28 C -0.219 4.219 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.233 0.767 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.080 0.920 44 H 0.150 0.850 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.569 23.067 -25.090 34.118 hybrid contribution 1.014 -0.926 -0.148 1.381 sum -0.555 22.140 -25.238 33.578 Atomic orbital electron populations 1.21368 0.92689 1.01993 1.02063 1.22437 0.95504 0.94387 1.04803 0.87872 1.23218 1.02503 1.01278 0.94007 1.22177 0.97591 1.01985 0.93921 0.86437 1.21247 0.97153 0.96793 0.99443 1.20620 0.79114 0.90329 0.78946 1.90744 1.54285 1.30424 1.64530 1.47298 1.29323 1.07840 1.47305 1.21651 0.98604 0.88968 0.93021 1.21707 0.99578 0.88663 0.92025 1.45808 1.45730 1.29226 1.18245 1.20278 0.81417 0.86067 0.80464 1.90701 1.31511 1.52022 1.65015 1.23274 1.04436 0.97898 1.01799 1.84800 1.57295 1.37263 1.12196 1.22318 1.28384 1.10124 1.06060 0.89368 1.24714 0.95679 0.94205 0.96719 1.69943 1.41624 1.20401 1.19709 0.86732 0.82066 0.82829 0.80216 1.19193 1.19939 1.15943 1.21828 0.99694 0.86848 0.95675 1.23591 1.00733 1.01378 0.97425 1.23373 0.91574 1.03918 1.03013 0.92045 0.92168 0.92439 0.88957 0.88683 0.88357 0.88682 0.88928 0.89425 0.91396 0.91121 0.76656 0.88411 0.88400 0.91952 0.85038 0.87799 0.87731 0.87519 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.19 37.16 0.38 -0.36 16 2 C -0.15 -0.94 6.13 -90.58 -0.56 -1.50 16 3 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.17 -1.15 9.83 -26.69 -0.26 -1.42 16 5 C -0.14 -1.08 5.09 -90.62 -0.46 -1.54 16 6 H 0.12 1.21 7.39 -51.93 -0.38 0.83 16 7 C -0.11 -0.69 4.50 -27.88 -0.13 -0.82 16 8 C 0.52 5.14 7.65 -10.99 -0.08 5.06 16 9 O -0.52 -7.37 15.25 5.56 0.08 -7.28 16 10 N -0.59 -4.79 2.80 -166.06 -0.47 -5.25 16 11 C 0.10 0.89 5.02 -4.04 -0.02 0.87 16 12 C 0.11 1.27 5.96 -4.04 -0.02 1.24 16 13 N -0.73 -9.58 5.56 -60.29 -0.33 -9.91 16 14 C 0.53 9.68 7.85 -10.99 -0.09 9.59 16 15 O -0.52 -11.53 15.86 5.56 0.09 -11.45 16 16 C -0.12 -2.41 6.16 36.00 0.22 -2.19 16 17 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 18 C -0.52 -15.15 10.04 30.94 0.31 -14.84 16 19 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 20 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.71 13.97 55.49 0.78 -25.94 16 22 Si 0.86 22.01 27.74 -169.99 -4.72 17.29 16 23 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 26 C 0.06 0.35 5.79 -67.89 -0.39 -0.04 16 27 C -0.19 -1.17 10.19 -26.73 -0.27 -1.44 16 28 C -0.18 -0.94 9.74 -26.69 -0.26 -1.20 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 32 H 0.09 0.51 8.03 -51.93 -0.42 0.10 16 33 H 0.09 0.65 8.05 -51.93 -0.42 0.23 16 34 H 0.10 0.50 7.87 -51.93 -0.41 0.09 16 35 H 0.09 0.43 7.69 -51.93 -0.40 0.03 16 36 H 0.09 0.91 7.50 -51.93 -0.39 0.52 16 37 H 0.09 0.58 6.00 -51.93 -0.31 0.27 16 38 H 0.07 0.83 5.89 -51.93 -0.31 0.53 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.40 3.90 8.47 -40.82 -0.35 3.55 16 41 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 42 H 0.10 1.75 8.14 -51.91 -0.42 1.33 16 43 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.13 0.42 7.13 -51.93 -0.37 0.05 16 45 H 0.10 0.87 6.11 -51.93 -0.32 0.55 16 46 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.10 0.62 6.12 -51.93 -0.32 0.30 16 LS Contribution 405.94 15.07 6.12 6.12 Total: -1.00 -36.61 405.94 -9.93 -46.53 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -7.75 Total: 1.38 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -1.73 Total: -5.85 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: -0.03 Total: -41.10 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.17 Total: -18.73 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.72 Total: 17.29 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.61 -9.93 -46.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001529704634.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.585 kcal (2) G-P(sol) polarization free energy of solvation -36.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds