Wall clock time and date at job start Sat Apr 11 2020 06:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 115.54606 * 2 1 4 4 C 1.53081 * 117.51020 * 145.70971 * 2 1 3 5 5 C 1.52999 * 117.50060 * 214.31860 * 2 1 3 6 6 H 1.09000 * 117.49754 * 0.02562 * 5 2 1 7 7 C 1.53006 * 117.49496 * 144.99834 * 5 2 1 8 8 C 1.50699 * 109.46917 * 184.91591 * 7 5 2 9 9 O 1.21279 * 120.00030 * 4.99936 * 8 7 5 10 10 N 1.34776 * 119.99877 * 185.00536 * 8 7 5 11 11 C 1.46498 * 119.99748 * 356.35542 * 10 8 7 12 12 C 1.53001 * 109.47468 * 90.00178 * 11 10 8 13 13 N 1.46498 * 109.47486 * 179.97438 * 12 11 10 14 14 C 1.34773 * 120.00026 * 179.97438 * 13 12 11 15 15 O 1.21281 * 120.00385 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99946 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.47045 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99924 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00048 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99890 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00160 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99646 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47536 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.46973 * 119.99958 * 22 20 18 25 25 H 1.48501 * 109.47228 * 239.99689 * 22 20 18 26 26 C 1.46495 * 120.00196 * 176.35284 * 10 8 7 27 27 C 1.53003 * 117.49653 * 17.10093 * 26 10 8 28 28 C 1.53007 * 117.49997 * 308.44096 * 26 10 8 29 29 H 1.09001 * 109.47082 * 205.67365 * 1 2 3 30 30 H 1.09000 * 109.47525 * 325.67393 * 1 2 3 31 31 H 1.09004 * 109.46745 * 85.68282 * 1 2 3 32 32 H 1.08999 * 117.49502 * 359.97438 * 4 2 1 33 33 H 1.09000 * 117.51143 * 214.95943 * 4 2 1 34 34 H 1.08998 * 109.46753 * 64.91888 * 7 5 2 35 35 H 1.08993 * 109.47192 * 304.91638 * 7 5 2 36 36 H 1.08994 * 109.47704 * 329.99800 * 11 10 8 37 37 H 1.09005 * 109.46903 * 209.99452 * 11 10 8 38 38 H 1.09001 * 109.47120 * 299.99835 * 12 11 10 39 39 H 1.09003 * 109.46830 * 59.99433 * 12 11 10 40 40 H 0.96998 * 119.99602 * 0.02562 * 13 12 11 41 41 H 1.09001 * 109.47230 * 300.00582 * 16 14 13 42 42 H 1.08998 * 109.46759 * 60.00640 * 16 14 13 43 43 H 0.96998 * 120.00400 * 179.97438 * 21 20 18 44 44 H 1.08997 * 115.55509 * 162.76744 * 26 10 8 45 45 H 1.09003 * 117.50009 * 359.97438 * 27 26 10 46 46 H 1.08998 * 117.50260 * 145.02425 * 27 26 10 47 47 H 1.09000 * 117.49792 * 214.97159 * 28 26 10 48 48 H 1.09002 * 117.49871 * 359.97438 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2371 -1.1217 0.7649 5 6 2.2365 -1.1209 -0.7651 6 1 1.6113 -1.8580 -1.2689 7 6 3.5488 -0.7754 -1.4719 8 6 4.0227 -1.9679 -2.2622 9 8 3.3308 -2.9614 -2.3344 10 7 5.2153 -1.9303 -2.8888 11 6 6.0150 -0.7030 -2.8684 12 6 6.9428 -0.7189 -1.6519 13 7 7.7430 0.5081 -1.6319 14 6 8.6360 0.7142 -0.6437 15 8 8.7775 -0.1163 0.2287 16 6 9.4595 1.9762 -0.6234 17 16 10.5570 1.9574 0.8158 18 6 11.3757 3.5021 0.5965 19 1 11.1271 4.1302 -0.2463 20 6 12.3401 3.9118 1.5067 21 7 12.6434 3.1462 2.5335 22 14 13.2075 5.5498 1.2745 23 1 12.6899 6.2152 0.0520 24 1 12.9549 6.4154 2.4545 25 1 14.6679 5.3208 1.1323 26 6 5.7120 -3.1167 -3.5901 27 6 4.7003 -4.2145 -3.9252 28 6 5.7331 -4.4371 -2.8174 29 1 -0.3633 -0.9262 0.4452 30 1 -0.3634 0.8487 0.5795 31 1 -0.3633 0.0774 -1.0248 32 1 1.6120 -1.8592 1.2683 33 1 3.1724 -0.8763 1.2680 34 1 4.3016 -0.5087 -0.7302 35 1 3.3881 0.0663 -2.1455 36 1 5.3533 0.1610 -2.8093 37 1 6.6111 -0.6426 -3.7791 38 1 6.3469 -0.7793 -0.7412 39 1 7.6047 -1.5830 -1.7111 40 1 7.6295 1.1725 -2.3294 41 1 10.0558 2.0356 -1.5339 42 1 8.7981 2.8406 -0.5652 43 1 13.3177 3.4322 3.1694 44 1 6.5162 -2.9385 -4.3040 45 1 3.6653 -4.0542 -3.6234 46 1 4.8391 -4.7589 -4.8592 47 1 6.5508 -5.1277 -3.0233 48 1 5.3777 -4.4229 -1.7870 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001529704636.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:34 Heat of formation + Delta-G solvation = -15.608775 kcal Electronic energy + Delta-G solvation = -26670.392341 eV Core-core repulsion = 22853.673012 eV Total energy + Delta-G solvation = -3816.719329 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.90271 -39.22964 -38.24956 -36.68972 -35.81263 -33.83836 -32.46468 -30.72303 -30.16362 -28.02243 -27.75701 -25.52012 -23.74274 -23.14221 -22.54756 -21.47845 -20.62819 -20.49727 -19.34417 -17.97706 -17.32457 -16.71350 -16.45363 -16.15521 -15.63593 -15.44320 -15.28668 -14.86450 -14.83686 -14.24284 -14.11110 -14.00572 -13.83556 -13.42498 -13.34443 -13.13351 -13.03179 -12.58808 -12.55626 -12.53969 -12.27023 -11.71207 -11.65765 -11.59438 -11.54842 -11.33193 -11.09859 -11.05712 -10.79394 -10.60164 -10.25934 -10.10482 -9.84835 -9.55852 -9.52831 -9.11901 -9.02610 -8.81726 -8.27573 -6.54328 -6.25207 -3.96169 2.17567 2.36022 3.00825 3.01897 3.19064 3.25905 3.30016 3.44574 3.62104 3.73149 4.05748 4.16759 4.32201 4.40584 4.49185 4.54456 4.63004 4.69871 4.82602 4.85946 4.92792 4.98861 5.06432 5.09540 5.10231 5.12384 5.25138 5.31243 5.47790 5.48928 5.53413 5.55276 5.55649 5.60061 5.73316 5.76147 5.81298 5.82918 5.95932 6.05149 6.07613 6.09793 6.41663 6.46013 6.95746 7.55693 7.57544 7.84799 8.31829 8.51248 9.20305 10.82270 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012550 B = 0.002158 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.471322 B =12968.906129 C =14494.990599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.154 4.154 3 H 0.104 0.896 4 C -0.173 4.173 5 C -0.139 4.139 6 H 0.118 0.882 7 C -0.115 4.115 8 C 0.523 3.477 9 O -0.526 6.526 10 N -0.583 5.583 11 C 0.101 3.899 12 C 0.103 3.897 13 N -0.739 5.739 14 C 0.533 3.467 15 O -0.514 6.514 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.066 3.934 27 C -0.196 4.196 28 C -0.187 4.187 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.129 0.871 45 H 0.145 0.855 46 H 0.087 0.913 47 H 0.097 0.903 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.133 -7.912 -13.956 26.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.172 4.172 3 H 0.123 0.877 4 C -0.210 4.210 5 C -0.157 4.157 6 H 0.136 0.864 7 C -0.154 4.154 8 C 0.313 3.687 9 O -0.403 6.403 10 N -0.314 5.314 11 C -0.022 4.022 12 C -0.023 4.023 13 N -0.395 5.395 14 C 0.319 3.681 15 O -0.387 6.387 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.206 1.206 26 C -0.038 4.038 27 C -0.233 4.233 28 C -0.225 4.225 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.233 0.767 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.146 0.854 45 H 0.162 0.838 46 H 0.105 0.895 47 H 0.115 0.885 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.158 -9.852 -12.365 26.412 hybrid contribution 0.694 2.366 -1.442 2.856 sum -20.464 -7.486 -13.807 25.796 Atomic orbital electron populations 1.21355 0.92764 1.01995 1.01810 1.22446 0.95376 0.94596 1.04774 0.87742 1.23249 1.02777 1.01165 0.93816 1.22158 0.97449 1.02131 0.94011 0.86362 1.21368 0.97682 0.96602 0.99772 1.20709 0.80101 0.89464 0.78449 1.90467 1.55343 1.33690 1.60831 1.47190 1.18871 1.12393 1.52920 1.21773 0.94576 0.86714 0.99179 1.21677 0.93960 0.88534 0.98137 1.45863 1.41876 1.22088 1.29637 1.20334 0.79087 0.88095 0.80616 1.90722 1.65885 1.45616 1.36513 1.23527 1.02268 0.97005 1.07556 1.85440 1.43805 1.27753 1.26423 1.22897 1.25852 1.05235 1.14362 0.90850 1.25000 0.96072 0.98091 0.94464 1.70019 1.31008 1.36728 1.12477 0.86112 0.79117 0.81958 0.78273 1.19614 1.20548 1.20560 1.21725 1.01411 0.81120 0.99502 1.24098 1.00479 0.99610 0.99098 1.23262 1.02144 0.98835 0.98292 0.92532 0.92107 0.92241 0.88699 0.88635 0.88434 0.88310 0.89294 0.89105 0.91433 0.90952 0.76735 0.89136 0.89138 0.92196 0.85371 0.83768 0.89502 0.88483 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.19 37.16 0.38 -0.44 16 2 C -0.15 -1.18 6.13 -90.58 -0.56 -1.73 16 3 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.17 -1.49 9.83 -26.69 -0.26 -1.76 16 5 C -0.14 -1.20 5.17 -90.61 -0.47 -1.67 16 6 H 0.12 1.18 7.25 -51.93 -0.38 0.80 16 7 C -0.11 -0.90 4.52 -27.88 -0.13 -1.02 16 8 C 0.52 5.13 7.43 -10.99 -0.08 5.05 16 9 O -0.53 -6.52 11.42 5.56 0.06 -6.46 16 10 N -0.58 -4.91 2.84 -166.11 -0.47 -5.38 16 11 C 0.10 0.66 5.30 -4.04 -0.02 0.64 16 12 C 0.10 1.03 5.95 -4.04 -0.02 1.00 16 13 N -0.74 -8.34 5.56 -60.29 -0.33 -8.68 16 14 C 0.53 9.24 7.85 -10.99 -0.09 9.16 16 15 O -0.51 -11.25 15.86 5.56 0.09 -11.16 16 16 C -0.15 -2.90 6.16 36.01 0.22 -2.68 16 17 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 18 C -0.54 -14.92 9.50 30.94 0.29 -14.62 16 19 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 20 C 0.07 2.05 5.49 -17.44 -0.10 1.96 16 21 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 22 Si 0.92 21.04 29.55 -169.99 -5.02 16.02 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 C 0.07 0.57 6.62 -67.93 -0.45 0.12 16 27 C -0.20 -1.83 9.64 -26.69 -0.26 -2.09 16 28 C -0.19 -1.79 9.90 -26.69 -0.26 -2.06 16 29 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.79 8.05 -51.93 -0.42 0.37 16 33 H 0.10 0.85 8.03 -51.93 -0.42 0.43 16 34 H 0.10 0.77 6.49 -51.93 -0.34 0.43 16 35 H 0.10 0.58 7.55 -51.93 -0.39 0.19 16 36 H 0.09 0.42 6.60 -51.93 -0.34 0.07 16 37 H 0.09 0.45 8.03 -51.93 -0.42 0.03 16 38 H 0.07 0.77 6.91 -51.93 -0.36 0.41 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.40 3.10 8.47 -40.82 -0.35 2.75 16 41 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 42 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 44 H 0.13 0.85 8.09 -51.93 -0.42 0.43 16 45 H 0.15 1.67 4.96 -53.39 -0.26 1.40 16 46 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.10 1.10 7.82 -51.93 -0.41 0.70 16 LS Contribution 407.44 15.07 6.14 6.14 Total: -1.00 -35.21 407.44 -10.65 -45.86 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.83 Total: 2.72 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -1.80 Total: -10.14 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: -0.07 Total: -39.16 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: 0.15 Total: -17.62 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.21 -10.65 -45.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001529704636.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.254 kcal (2) G-P(sol) polarization free energy of solvation -35.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds