Wall clock time and date at job start Sat Apr 11 2020 06:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 115.55145 * 2 1 4 4 C 1.53003 * 117.51608 * 145.69633 * 2 1 3 5 5 C 1.52993 * 117.49822 * 214.32307 * 2 1 3 6 6 H 1.09003 * 117.50294 * 144.97761 * 5 2 1 7 7 C 1.53002 * 117.50118 * 359.97438 * 5 2 1 8 8 C 1.50701 * 109.47174 * 174.99980 * 7 5 2 9 9 O 1.21276 * 120.00314 * 355.03040 * 8 7 5 10 10 N 1.34773 * 119.99940 * 175.03000 * 8 7 5 11 11 C 1.46505 * 120.00231 * 5.94847 * 10 8 7 12 12 C 1.52998 * 109.46902 * 89.99650 * 11 10 8 13 13 N 1.46502 * 109.46962 * 180.02562 * 12 11 10 14 14 C 1.34784 * 120.00222 * 180.02562 * 13 12 11 15 15 O 1.21286 * 119.99388 * 359.97438 * 14 13 12 16 16 C 1.50693 * 120.00051 * 179.97438 * 14 13 12 17 17 S 1.81005 * 109.47081 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99824 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00259 * 0.02562 * 18 17 16 20 20 C 1.38802 * 119.99638 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00016 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00199 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46864 * 90.00213 * 22 20 18 24 24 H 1.48498 * 109.47385 * 210.00223 * 22 20 18 25 25 H 1.48510 * 109.47012 * 330.00622 * 22 20 18 26 26 C 1.46496 * 120.00324 * 185.94869 * 10 8 7 27 27 C 1.53000 * 117.49796 * 16.45213 * 26 10 8 28 28 C 1.53001 * 60.00298 * 252.51289 * 27 26 10 29 29 H 1.08997 * 109.47155 * 205.58269 * 1 2 3 30 30 H 1.09004 * 109.46781 * 325.59062 * 1 2 3 31 31 H 1.09001 * 109.46666 * 85.58291 * 1 2 3 32 32 H 1.08998 * 117.49888 * 214.97294 * 4 2 1 33 33 H 1.09001 * 117.49661 * 359.97438 * 4 2 1 34 34 H 1.08999 * 109.46600 * 294.99558 * 7 5 2 35 35 H 1.08993 * 109.47043 * 54.99771 * 7 5 2 36 36 H 1.08996 * 109.47496 * 210.00268 * 11 10 8 37 37 H 1.09003 * 109.46978 * 329.99963 * 11 10 8 38 38 H 1.08994 * 109.47669 * 300.00054 * 12 11 10 39 39 H 1.08997 * 109.47242 * 60.00751 * 12 11 10 40 40 H 0.97006 * 120.00165 * 359.97438 * 13 12 11 41 41 H 1.08996 * 109.47567 * 300.00380 * 16 14 13 42 42 H 1.09003 * 109.47019 * 60.00143 * 16 14 13 43 43 H 0.96995 * 120.00242 * 179.97438 * 21 20 18 44 44 H 1.09000 * 115.55369 * 162.16107 * 26 10 8 45 45 H 1.09005 * 117.50018 * 359.97438 * 27 26 10 46 46 H 1.09000 * 117.50354 * 145.02185 * 27 26 10 47 47 H 1.09001 * 117.49549 * 252.51497 * 28 27 26 48 48 H 1.08996 * 117.52449 * 107.47773 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2369 -1.1209 0.7648 5 6 2.2364 -1.1208 -0.7652 6 1 3.1712 -0.8747 -1.2691 7 6 1.3588 -2.1562 -1.4714 8 6 2.2301 -3.0967 -2.2636 9 8 3.4245 -2.9001 -2.3369 10 7 1.6818 -4.1562 -2.8906 11 6 0.2263 -4.3223 -2.9119 12 6 -0.3490 -3.6200 -4.1435 13 7 -1.8045 -3.7856 -4.1645 14 6 -2.5296 -3.2473 -5.1651 15 8 -1.9771 -2.6255 -6.0477 16 6 -4.0267 -3.4181 -5.1870 17 16 -4.7074 -2.5872 -6.6439 18 6 -6.4203 -2.9363 -6.4227 19 1 -6.7484 -3.5115 -5.5696 20 6 -7.3479 -2.4719 -7.3449 21 7 -8.6275 -2.7322 -7.1795 22 14 -6.7805 -1.4763 -8.8201 23 1 -6.4848 -2.3920 -9.9512 24 1 -7.8510 -0.5274 -9.2184 25 1 -5.5543 -0.7180 -8.4636 26 6 2.5411 -5.1420 -3.5508 27 6 4.0261 -5.1440 -3.1825 28 6 3.5775 -4.6203 -4.5483 29 1 -0.3633 -0.9269 0.4437 30 1 -0.3633 0.8479 0.5808 31 1 -0.3633 0.0792 -1.0247 32 1 3.1720 -0.8750 1.2678 33 1 1.6119 -1.8584 1.2684 34 1 0.7951 -2.7214 -0.7292 35 1 0.6673 -1.6484 -2.1436 36 1 -0.0178 -5.3838 -2.9517 37 1 -0.2026 -3.8845 -2.0105 38 1 -0.1050 -2.5585 -4.1036 39 1 0.0798 -4.0579 -5.0448 40 1 -2.2463 -4.2832 -3.4587 41 1 -4.2708 -4.4796 -5.2265 42 1 -4.4556 -2.9799 -4.2858 43 1 -9.2757 -2.4074 -7.8237 44 1 2.0745 -6.1032 -3.7663 45 1 4.3638 -4.4115 -2.4492 46 1 4.5368 -6.1066 -3.1554 47 1 3.7928 -5.2386 -5.4198 48 1 3.6195 -3.5438 -4.7136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001529704639.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:37 Heat of formation + Delta-G solvation = -16.734637 kcal Electronic energy + Delta-G solvation = -26868.314620 eV Core-core repulsion = 23051.546469 eV Total energy + Delta-G solvation = -3816.768150 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.94456 -39.34426 -38.40571 -36.72928 -35.85438 -33.91076 -32.47239 -30.44669 -30.06270 -28.48750 -27.95772 -25.64693 -23.80312 -23.21637 -22.57731 -21.81470 -20.72918 -20.08161 -19.16435 -18.02687 -17.49693 -16.69250 -16.49573 -16.28115 -16.07877 -15.49850 -15.39726 -14.98488 -14.76240 -14.21482 -14.17591 -13.94588 -13.74475 -13.59581 -13.42713 -13.13337 -13.08924 -12.82838 -12.69817 -12.51984 -12.32707 -11.87325 -11.72129 -11.62487 -11.48652 -11.33982 -11.29699 -11.03595 -10.67329 -10.63109 -10.26692 -10.15115 -9.89710 -9.74994 -9.64857 -9.13699 -9.02707 -8.82444 -8.54266 -6.96044 -6.32168 -4.04376 2.14412 2.30496 2.76525 2.88482 3.27393 3.31481 3.40770 3.48095 3.58857 3.67569 4.04383 4.25480 4.30150 4.35375 4.44384 4.50130 4.57974 4.60640 4.70037 4.77147 4.82480 4.85515 4.96930 5.02757 5.06983 5.09949 5.19900 5.23271 5.30186 5.42826 5.44186 5.50009 5.52321 5.54358 5.69176 5.70667 5.74730 5.76815 5.92321 5.94772 5.98401 6.05805 6.32754 6.37823 6.91992 7.46679 7.79535 7.90814 8.37934 8.38988 9.14005 10.76999 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013003 B = 0.002289 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.844763 B =12228.360791 C =13634.570983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.152 4.152 3 H 0.105 0.895 4 C -0.175 4.175 5 C -0.139 4.139 6 H 0.118 0.882 7 C -0.112 4.112 8 C 0.521 3.479 9 O -0.525 6.525 10 N -0.584 5.584 11 C 0.101 3.899 12 C 0.104 3.896 13 N -0.736 5.736 14 C 0.532 3.468 15 O -0.516 6.516 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.067 3.933 27 C -0.190 4.190 28 C -0.184 4.184 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.400 0.600 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.271 0.729 44 H 0.130 0.870 45 H 0.135 0.865 46 H 0.089 0.911 47 H 0.096 0.904 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.304 -3.493 16.528 27.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.170 4.170 3 H 0.123 0.877 4 C -0.212 4.212 5 C -0.157 4.157 6 H 0.136 0.864 7 C -0.151 4.151 8 C 0.311 3.689 9 O -0.402 6.402 10 N -0.315 5.315 11 C -0.023 4.023 12 C -0.022 4.022 13 N -0.392 5.392 14 C 0.317 3.683 15 O -0.390 6.390 16 C -0.274 4.274 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.037 4.037 27 C -0.228 4.228 28 C -0.223 4.223 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.234 0.766 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.147 0.853 45 H 0.153 0.847 46 H 0.107 0.893 47 H 0.114 0.886 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 23.666 -2.323 14.956 28.092 hybrid contribution -1.066 -0.700 0.580 1.401 sum 22.600 -3.023 15.536 27.591 Atomic orbital electron populations 1.21386 0.92620 1.02072 1.02232 1.22425 0.95545 0.94551 1.04469 0.87724 1.23171 1.02505 1.01600 0.93881 1.22136 1.01235 0.98635 0.93730 0.86357 1.21296 0.98129 0.96031 0.99651 1.20709 0.88764 0.80694 0.78759 1.90541 1.15660 1.71907 1.62118 1.47200 1.05937 1.24208 1.54190 1.21766 0.79442 1.02445 0.98646 1.21667 0.80718 1.01211 0.98604 1.45818 1.06708 1.58351 1.28344 1.20304 0.89043 0.78057 0.80857 1.90722 1.72524 1.39388 1.36319 1.23272 0.93097 1.05661 1.05406 1.84835 1.06481 1.70725 1.29500 1.22304 0.88947 1.40923 1.14767 0.89355 1.24714 0.94059 0.94948 0.97584 1.69930 1.00732 1.44467 1.36498 0.86741 0.80539 0.81357 0.83252 1.19202 1.19917 1.15914 1.21740 0.87683 0.92836 1.01475 1.23810 0.94852 1.03628 1.00473 1.23251 1.03317 1.02254 0.93474 0.92500 0.92000 0.91856 0.88837 0.88868 0.88760 0.88065 0.89124 0.89234 0.91405 0.90916 0.76576 0.88413 0.88363 0.91906 0.85282 0.84720 0.89270 0.88569 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.83 9.19 37.16 0.34 -0.49 16 2 C -0.15 -1.09 6.41 -90.62 -0.58 -1.67 16 3 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 4 C -0.17 -1.22 9.82 -26.73 -0.26 -1.48 16 5 C -0.14 -1.13 5.46 -90.62 -0.49 -1.62 16 6 H 0.12 1.17 7.24 -51.93 -0.38 0.79 16 7 C -0.11 -0.82 3.60 -27.88 -0.10 -0.92 16 8 C 0.52 4.94 7.46 -10.99 -0.08 4.86 16 9 O -0.53 -6.42 11.28 5.56 0.06 -6.35 16 10 N -0.58 -4.69 2.84 -166.11 -0.47 -5.16 16 11 C 0.10 0.61 5.46 -4.04 -0.02 0.58 16 12 C 0.10 0.98 6.00 -4.04 -0.02 0.95 16 13 N -0.74 -7.76 5.56 -60.30 -0.33 -8.10 16 14 C 0.53 8.69 7.85 -10.99 -0.09 8.60 16 15 O -0.52 -10.68 15.86 5.55 0.09 -10.59 16 16 C -0.12 -2.23 6.16 36.00 0.22 -2.01 16 17 S -0.14 -3.49 18.55 -107.50 -1.99 -5.49 16 18 C -0.52 -14.69 10.04 30.94 0.31 -14.38 16 19 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 20 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 21 N -0.88 -26.17 13.97 55.49 0.78 -25.39 16 22 Si 0.86 21.49 27.74 -169.99 -4.71 16.78 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 26 C 0.07 0.54 6.62 -67.93 -0.45 0.09 16 27 C -0.19 -1.70 9.63 -26.73 -0.26 -1.96 16 28 C -0.18 -1.71 9.87 -26.73 -0.26 -1.97 16 29 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.45 7.84 -51.93 -0.41 0.04 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.58 7.94 -51.93 -0.41 0.16 16 34 H 0.09 0.52 7.09 -51.93 -0.37 0.15 16 35 H 0.10 0.73 7.37 -51.93 -0.38 0.35 16 36 H 0.09 0.40 8.03 -51.93 -0.42 -0.02 16 37 H 0.09 0.38 6.31 -51.93 -0.33 0.05 16 38 H 0.07 0.74 7.75 -51.93 -0.40 0.34 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.40 2.84 8.47 -40.82 -0.35 2.49 16 41 H 0.10 1.62 8.14 -51.92 -0.42 1.20 16 42 H 0.10 1.62 8.14 -51.91 -0.42 1.20 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 44 H 0.13 0.79 8.09 -51.93 -0.42 0.37 16 45 H 0.14 1.51 5.22 -52.10 -0.27 1.24 16 46 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.10 1.11 7.59 -51.93 -0.39 0.72 16 LS Contribution 404.14 15.07 6.09 6.09 Total: -1.00 -34.94 404.14 -10.24 -45.18 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.90 Total: 1.79 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -1.85 Total: -8.76 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: -0.03 Total: -38.65 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: 0.15 Total: -16.94 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.78 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.94 -10.24 -45.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001529704639.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.446 kcal (2) G-P(sol) polarization free energy of solvation -34.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds