Wall clock time and date at job start Sat Apr 11 2020 06:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 115.55099 * 2 1 4 4 C 1.53001 * 117.49700 * 214.29582 * 2 1 3 5 5 C 1.52993 * 117.49769 * 145.67344 * 2 1 3 6 6 H 1.09007 * 117.50110 * 215.00285 * 5 2 1 7 7 C 1.53001 * 117.50091 * 359.97438 * 5 2 1 8 8 C 1.50699 * 109.47318 * 185.00147 * 7 5 2 9 9 O 1.21279 * 120.00262 * 4.99351 * 8 7 5 10 10 N 1.34776 * 120.00033 * 184.99106 * 8 7 5 11 11 C 1.46505 * 120.00205 * 185.04168 * 10 8 7 12 12 C 1.52995 * 109.47424 * 270.00187 * 11 10 8 13 13 N 1.46497 * 109.47227 * 179.97438 * 12 11 10 14 14 C 1.34774 * 119.99763 * 179.72312 * 13 12 11 15 15 O 1.21281 * 120.00232 * 0.27869 * 14 13 12 16 16 C 1.50705 * 119.99745 * 180.27657 * 14 13 12 17 17 S 1.81002 * 109.47058 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00214 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99496 * 359.97438 * 18 17 16 20 20 C 1.38799 * 120.00086 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00076 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99886 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46918 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46997 * 120.00119 * 22 20 18 25 25 H 1.48501 * 109.47049 * 240.00541 * 22 20 18 26 26 C 1.46501 * 120.00013 * 5.04437 * 10 8 7 27 27 C 1.53004 * 117.49795 * 182.79216 * 26 10 8 28 28 C 1.53001 * 117.49908 * 114.13230 * 26 10 8 29 29 H 1.08996 * 109.47294 * 274.32899 * 1 2 3 30 30 H 1.09007 * 109.47155 * 34.32648 * 1 2 3 31 31 H 1.09003 * 109.47215 * 154.32384 * 1 2 3 32 32 H 1.09001 * 117.49816 * 145.02815 * 4 2 1 33 33 H 1.09004 * 117.50174 * 359.97438 * 4 2 1 34 34 H 1.08999 * 109.47432 * 65.00161 * 7 5 2 35 35 H 1.09000 * 109.47102 * 305.00219 * 7 5 2 36 36 H 1.09000 * 109.46828 * 150.00048 * 11 10 8 37 37 H 1.09007 * 109.46859 * 30.00396 * 11 10 8 38 38 H 1.09007 * 109.47052 * 59.99427 * 12 11 10 39 39 H 1.08998 * 109.47423 * 300.00233 * 12 11 10 40 40 H 0.97001 * 119.99947 * 0.02562 * 13 12 11 41 41 H 1.09001 * 109.47182 * 299.99922 * 16 14 13 42 42 H 1.08996 * 109.47178 * 60.00249 * 16 14 13 43 43 H 0.97000 * 120.00192 * 180.02562 * 21 20 18 44 44 H 1.08997 * 115.54927 * 328.46287 * 26 10 8 45 45 H 1.09002 * 117.50179 * 0.02562 * 27 26 10 46 46 H 1.09000 * 117.49313 * 145.02189 * 27 26 10 47 47 H 1.08994 * 117.50110 * 214.97720 * 28 26 10 48 48 H 1.09004 * 117.49917 * 359.97438 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2364 -1.1212 -0.7647 5 6 2.2364 -1.1207 0.7653 6 1 3.1713 -0.8747 1.2689 7 6 1.3588 -2.1554 1.4725 8 6 2.2300 -3.0959 2.2646 9 8 3.4246 -2.8996 2.3374 10 7 1.6817 -4.1551 2.8921 11 6 2.5085 -5.0060 3.7517 12 6 3.1141 -6.1374 2.9186 13 7 3.9413 -6.9878 3.7781 14 6 4.5743 -8.0582 3.2583 15 8 4.4631 -8.3144 2.0781 16 6 5.4202 -8.9366 4.1437 17 16 6.1319 -10.2785 3.1593 18 6 7.0435 -11.1237 4.4080 19 1 7.0351 -10.7575 5.4239 20 6 7.7724 -12.2602 4.0858 21 7 7.7830 -12.7061 2.8475 22 14 8.7394 -13.1559 5.4095 23 1 8.5646 -12.4574 6.7083 24 1 8.2429 -14.5504 5.5271 25 1 10.1790 -13.1719 5.0454 26 6 0.2589 -4.4558 2.7146 27 6 -0.3184 -5.6321 3.5046 28 6 -0.1039 -5.7558 1.9940 29 1 -0.3634 0.0776 1.0247 30 1 -0.3634 0.8487 -0.5795 31 1 -0.3634 -0.9262 -0.4453 32 1 3.1715 -0.8756 -1.2680 33 1 1.6111 -1.8591 -1.2675 34 1 0.7942 -2.7207 0.7311 35 1 0.6678 -1.6470 2.1450 36 1 1.8923 -5.4287 4.5452 37 1 3.3085 -4.4101 4.1913 38 1 3.7303 -5.7146 2.1250 39 1 2.3142 -6.7332 2.4790 40 1 4.0299 -6.7831 4.7221 41 1 6.2225 -8.3441 4.5835 42 1 4.8016 -9.3561 4.9370 43 1 8.2921 -13.5006 2.6224 44 1 -0.3871 -3.5931 2.5522 45 1 0.3602 -6.1820 4.1566 46 1 -1.3445 -5.5433 3.8615 47 1 -0.9889 -5.7485 1.3578 48 1 0.7160 -6.3871 1.6515 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001529704642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:40 Heat of formation + Delta-G solvation = -24.541204 kcal Electronic energy + Delta-G solvation = -26553.886451 eV Core-core repulsion = 22736.779782 eV Total energy + Delta-G solvation = -3817.106669 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.70539 -39.13559 -38.44826 -37.55507 -35.03944 -33.42358 -32.41927 -31.18214 -29.82601 -28.71655 -27.61341 -25.47735 -23.74690 -23.04608 -22.50948 -21.81799 -20.65915 -20.04713 -19.00481 -18.08772 -17.83878 -16.71596 -16.39845 -16.06012 -15.78623 -15.44892 -15.15531 -15.11993 -14.79541 -14.38239 -14.14010 -13.89089 -13.76849 -13.67001 -13.27746 -13.06069 -12.87333 -12.56511 -12.39250 -12.36885 -12.24707 -11.90035 -11.86514 -11.58709 -11.42627 -11.21058 -11.06179 -11.02961 -11.00892 -10.75221 -10.27808 -10.26419 -10.01799 -9.79922 -9.42996 -9.06919 -8.93174 -8.88452 -8.21830 -6.48788 -6.20730 -3.91135 2.22958 2.38180 3.09673 3.11151 3.22386 3.29598 3.34349 3.35573 3.39458 3.76787 4.01821 4.21253 4.24261 4.29685 4.39159 4.46093 4.46846 4.55073 4.71660 4.77968 4.88931 5.02689 5.05384 5.08910 5.14521 5.16825 5.19729 5.32121 5.32746 5.36176 5.42852 5.48093 5.57039 5.61798 5.63819 5.65497 5.76429 5.87505 5.88934 5.91346 5.97470 6.11167 6.15157 6.59114 6.98302 7.60884 7.68673 7.83882 8.36497 8.61614 9.24677 10.86787 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021191 B = 0.001852 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.992426 B =15111.181960 C =15680.754321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.155 4.155 3 H 0.104 0.896 4 C -0.173 4.173 5 C -0.140 4.140 6 H 0.119 0.881 7 C -0.105 4.105 8 C 0.521 3.479 9 O -0.526 6.526 10 N -0.585 5.585 11 C 0.101 3.899 12 C 0.106 3.894 13 N -0.737 5.737 14 C 0.533 3.467 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.064 3.936 27 C -0.181 4.181 28 C -0.193 4.193 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.132 0.868 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.104 0.896 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.113 24.828 0.311 32.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.173 4.173 3 H 0.122 0.878 4 C -0.210 4.210 5 C -0.159 4.159 6 H 0.137 0.863 7 C -0.145 4.145 8 C 0.310 3.690 9 O -0.401 6.401 10 N -0.317 5.317 11 C -0.022 4.022 12 C -0.020 4.020 13 N -0.392 5.392 14 C 0.319 3.681 15 O -0.390 6.390 16 C -0.303 4.303 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.040 4.040 27 C -0.219 4.219 28 C -0.231 4.231 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.232 0.768 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.149 0.851 45 H 0.122 0.878 46 H 0.125 0.875 47 H 0.123 0.877 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.571 24.399 -1.764 31.962 hybrid contribution 0.747 -0.331 2.626 2.750 sum -19.824 24.068 0.862 31.193 Atomic orbital electron populations 1.21365 0.92908 1.02052 1.01748 1.22413 0.95319 0.94595 1.04979 0.87783 1.23185 1.02596 1.01257 0.93960 1.22171 1.01237 0.98427 0.94045 0.86337 1.21199 0.97919 0.95792 0.99550 1.20632 0.88672 0.80853 0.78860 1.90737 1.15447 1.73250 1.60651 1.47297 1.08290 1.28127 1.48019 1.21656 0.95505 0.92244 0.92809 1.21689 0.94898 0.91250 0.94145 1.45849 1.51648 1.29121 1.12620 1.20310 0.79071 0.80064 0.88663 1.90705 1.61258 1.70629 1.16420 1.23526 1.01508 1.02279 1.03013 1.85414 1.60243 1.24592 1.13151 1.22913 1.34540 1.14444 0.96421 0.90855 1.24996 0.96148 0.96300 0.96175 1.70027 1.39719 1.23060 1.17475 0.86112 0.79342 0.79198 0.80806 1.19620 1.20575 1.20559 1.21814 0.82366 0.93472 1.06379 1.23371 1.02643 1.00572 0.95296 1.23605 1.04195 1.00364 0.94985 0.92213 0.92156 0.92439 0.88684 0.88726 0.88693 0.88412 0.89479 0.88984 0.91161 0.91460 0.76841 0.89142 0.89180 0.92240 0.85063 0.87787 0.87542 0.87750 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 9.19 37.16 0.34 -0.23 16 2 C -0.15 -0.98 6.41 -90.62 -0.58 -1.56 16 3 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.17 -1.29 9.82 -26.73 -0.26 -1.55 16 5 C -0.14 -1.13 5.45 -90.62 -0.49 -1.63 16 6 H 0.12 1.21 7.24 -51.93 -0.38 0.83 16 7 C -0.10 -0.72 3.58 -27.88 -0.10 -0.82 16 8 C 0.52 5.33 7.65 -10.99 -0.08 5.25 16 9 O -0.53 -7.57 15.17 5.56 0.08 -7.48 16 10 N -0.58 -5.01 2.80 -166.10 -0.47 -5.48 16 11 C 0.10 0.94 5.02 -4.04 -0.02 0.92 16 12 C 0.11 1.34 5.96 -4.05 -0.02 1.32 16 13 N -0.74 -10.19 5.56 -60.30 -0.33 -10.53 16 14 C 0.53 10.27 7.85 -10.98 -0.09 10.18 16 15 O -0.52 -12.16 15.86 5.56 0.09 -12.07 16 16 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 19 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.40 13.22 55.49 0.73 -25.67 16 22 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 26 C 0.06 0.38 5.79 -67.93 -0.39 -0.02 16 27 C -0.18 -1.00 9.74 -26.69 -0.26 -1.26 16 28 C -0.19 -1.25 10.19 -26.69 -0.27 -1.52 16 29 H 0.06 0.24 7.83 -51.93 -0.41 -0.17 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.25 7.90 -51.93 -0.41 -0.16 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.65 7.94 -51.93 -0.41 0.24 16 34 H 0.09 0.53 7.61 -51.93 -0.40 0.14 16 35 H 0.10 0.47 7.58 -51.93 -0.39 0.07 16 36 H 0.09 0.61 5.99 -51.93 -0.31 0.30 16 37 H 0.09 0.94 7.50 -51.93 -0.39 0.55 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 0.88 5.89 -51.93 -0.31 0.57 16 40 H 0.40 4.15 8.47 -40.82 -0.35 3.81 16 41 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 42 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.13 0.46 7.13 -51.93 -0.37 0.09 16 45 H 0.10 0.65 6.11 -51.93 -0.32 0.34 16 46 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.10 0.93 6.12 -51.93 -0.32 0.62 16 LS Contribution 406.44 15.07 6.12 6.12 Total: -1.00 -37.08 406.44 -10.50 -47.58 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.68 Total: 1.77 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -1.82 Total: -6.92 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: -0.07 Total: -41.68 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.17 Total: -19.56 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.08 -10.50 -47.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001529704642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.038 kcal (2) G-P(sol) polarization free energy of solvation -37.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds