Wall clock time and date at job start Sat Apr 11 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 110.01178 * 2 1 4 4 C 1.54266 * 110.03438 * 238.60935 * 2 1 3 5 5 C 1.54891 * 104.19479 * 217.05337 * 4 2 1 6 6 C 1.54890 * 102.74716 * 37.94268 * 5 4 2 7 7 H 1.09005 * 110.48842 * 80.86959 * 6 5 4 8 8 C 1.53000 * 110.48417 * 203.37697 * 6 5 4 9 9 C 1.50700 * 109.47256 * 291.75430 * 8 6 5 10 10 O 1.21283 * 119.99835 * 0.02562 * 9 8 6 11 11 N 1.34779 * 119.99936 * 179.97438 * 9 8 6 12 12 C 1.47066 * 136.05571 * 180.02562 * 11 9 8 13 13 C 1.53504 * 88.04678 * 207.12426 * 12 11 9 14 14 N 1.46497 * 114.20469 * 87.55042 * 13 12 11 15 15 C 1.34770 * 119.99975 * 155.00310 * 14 13 12 16 16 O 1.21276 * 120.00149 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00244 * 179.97438 * 15 14 13 18 18 S 1.80997 * 109.47267 * 179.97438 * 17 15 14 19 19 C 1.76204 * 99.99896 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00101 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99846 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00092 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99815 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47356 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47136 * 120.00408 * 23 21 19 26 26 H 1.48502 * 109.47404 * 240.00445 * 23 21 19 27 27 C 1.47064 * 136.05768 * 0.05168 * 11 9 8 28 28 C 1.54089 * 109.96921 * 121.44867 * 2 1 3 29 29 H 1.09004 * 109.46652 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47001 * 299.93377 * 1 2 3 31 31 H 1.08991 * 109.47219 * 59.94399 * 1 2 3 32 32 H 1.09000 * 110.48522 * 98.37724 * 4 2 1 33 33 H 1.08995 * 110.48687 * 335.72965 * 4 2 1 34 34 H 1.08995 * 110.75873 * 279.62726 * 5 4 2 35 35 H 1.09006 * 110.75715 * 156.25344 * 5 4 2 36 36 H 1.09005 * 109.47106 * 171.75799 * 8 6 5 37 37 H 1.08999 * 109.47050 * 51.75947 * 8 6 5 38 38 H 1.09002 * 113.46793 * 321.93398 * 12 11 9 39 39 H 1.08999 * 113.46805 * 92.31765 * 12 11 9 40 40 H 1.08994 * 114.20514 * 220.37405 * 13 12 11 41 41 H 0.97007 * 120.00149 * 334.99370 * 14 13 12 42 42 H 1.09000 * 109.47360 * 299.99857 * 17 15 14 43 43 H 1.09008 * 109.46864 * 59.99557 * 17 15 14 44 44 H 0.97006 * 119.99770 * 179.97438 * 22 21 19 45 45 H 1.08999 * 113.47096 * 267.62545 * 27 11 9 46 46 H 1.09005 * 113.46966 * 38.00938 * 27 11 9 47 47 H 1.08998 * 110.16077 * 0.14926 * 28 2 1 48 48 H 1.08994 * 110.00520 * 238.64645 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7549 -1.2372 5 6 3.3145 -1.4993 -0.7200 6 6 2.8892 -1.9397 0.7027 7 1 2.2815 -2.8435 0.6566 8 6 4.1197 -2.1678 1.5829 9 6 4.8738 -3.3754 1.0889 10 8 4.4673 -3.9926 0.1272 11 7 6.0005 -3.7690 1.7151 12 6 6.9831 -4.8502 1.5468 13 6 7.2684 -4.7542 3.0520 14 7 6.3881 -5.5782 3.8840 15 6 6.8019 -5.9928 5.0977 16 8 7.9033 -5.6842 5.5010 17 6 5.8962 -6.8400 5.9539 18 16 6.7312 -7.2322 7.5111 19 6 5.4834 -8.2009 8.2918 20 1 4.5459 -8.3823 7.7872 21 6 5.7053 -8.7308 9.5553 22 7 6.8476 -8.5093 10.1706 23 14 4.3822 -9.7572 10.3832 24 1 3.2007 -9.8566 9.4889 25 1 4.9104 -11.1176 10.6578 26 1 3.9836 -9.1138 11.6609 27 6 6.7880 -3.3065 2.8678 28 6 2.0563 -0.7556 1.2355 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5128 0.8906 31 1 -0.3633 0.5147 -0.8894 32 1 2.3290 -0.0527 -2.0258 33 1 1.3148 -1.4659 -1.5967 34 1 4.1714 -0.8270 -0.6763 35 1 3.5338 -2.3663 -1.3434 36 1 3.8040 -2.3331 2.6130 37 1 4.7665 -1.2917 1.5372 38 1 6.5374 -5.7994 1.2492 39 1 7.8337 -4.5709 0.9251 40 1 8.3224 -4.8458 3.3138 41 1 5.5072 -5.8253 3.5614 42 1 4.9767 -6.2930 6.1620 43 1 5.6579 -7.7641 5.4269 44 1 7.0025 -8.8794 11.0538 45 1 7.5873 -2.6160 2.5986 46 1 6.1765 -2.9420 3.6933 47 1 1.2229 -1.1244 1.8334 48 1 2.6845 -0.0974 1.8355 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001530350295.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:51 Heat of formation + Delta-G solvation = -57.279633 kcal Electronic energy + Delta-G solvation = -26481.778089 eV Core-core repulsion = 22663.251776 eV Total energy + Delta-G solvation = -3818.526313 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.98301 -39.54257 -38.61462 -37.61799 -33.59760 -32.95536 -32.46320 -30.53406 -29.74045 -28.63423 -27.15673 -26.26816 -25.52289 -24.44541 -22.15225 -20.83406 -20.50605 -19.73814 -19.12150 -17.95371 -17.34525 -16.78577 -16.48217 -16.09509 -15.74677 -15.46144 -15.16271 -14.91220 -14.83429 -14.39643 -13.85300 -13.78125 -13.53337 -13.36254 -13.29171 -13.25455 -13.08356 -12.66868 -12.54895 -12.27485 -12.09161 -11.96405 -11.38915 -11.27662 -11.09889 -11.09400 -11.05715 -11.03072 -11.00016 -10.88609 -10.79076 -10.68380 -9.94585 -9.84664 -9.59100 -9.15203 -9.09619 -8.97765 -8.28912 -6.54580 -6.25454 -3.96291 2.37227 2.53823 2.87867 2.89923 3.19515 3.24959 3.29574 3.58672 3.97742 4.16634 4.17654 4.23080 4.34015 4.42759 4.64132 4.74939 4.86444 4.97921 5.02175 5.02850 5.10151 5.10887 5.13062 5.15086 5.20467 5.27457 5.29193 5.33264 5.35432 5.40932 5.47145 5.53935 5.59232 5.66421 5.71466 5.74370 5.81756 5.81893 5.83080 5.99730 6.08203 6.11043 6.17333 6.47205 7.41048 7.55208 7.57344 7.91106 8.32074 8.45629 9.20374 10.81981 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014084 B = 0.001960 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.583979 B =14280.991742 C =15696.686916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.069 0.931 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.076 4.076 7 H 0.082 0.918 8 C -0.128 4.128 9 C 0.542 3.458 10 O -0.537 6.537 11 N -0.650 5.650 12 C 0.094 3.906 13 C 0.113 3.887 14 N -0.718 5.718 15 C 0.537 3.463 16 O -0.513 6.513 17 C -0.154 4.154 18 S -0.058 6.058 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.082 3.918 28 C -0.118 4.118 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.128 0.872 41 H 0.401 0.599 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.268 0.732 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.067 0.933 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.742 16.994 -21.626 28.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.088 0.912 4 C -0.159 4.159 5 C -0.155 4.155 6 C -0.095 4.095 7 H 0.101 0.899 8 C -0.168 4.168 9 C 0.333 3.667 10 O -0.414 6.414 11 N -0.387 5.387 12 C -0.030 4.030 13 C 0.006 3.994 14 N -0.372 5.372 15 C 0.324 3.676 16 O -0.386 6.386 17 C -0.305 4.305 18 S 0.168 5.832 19 C -0.684 4.684 20 H 0.092 0.908 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.043 4.043 28 C -0.156 4.156 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.146 0.854 41 H 0.236 0.764 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.078 0.922 45 H 0.115 0.885 46 H 0.103 0.897 47 H 0.085 0.915 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.233 17.215 -21.403 27.961 hybrid contribution -2.478 -1.003 -0.038 2.673 sum -7.710 16.212 -21.441 27.964 Atomic orbital electron populations 1.21897 0.95121 1.01846 1.01448 1.21777 0.95628 0.99259 0.94907 0.91229 1.22452 0.97620 0.98839 0.96962 1.22556 0.97026 0.99927 0.95964 1.21754 0.94557 0.98713 0.94453 0.89947 1.21712 0.97426 0.96166 1.01460 1.20338 0.79139 0.85379 0.81862 1.90703 1.67370 1.56403 1.26927 1.49785 1.23380 1.32406 1.33136 1.23395 0.91402 0.92160 0.96013 1.22106 0.97057 0.90216 0.90070 1.45639 1.19494 1.54141 1.17887 1.20371 0.87565 0.79153 0.80508 1.90707 1.21111 1.55562 1.71251 1.23539 1.02432 1.01338 1.03167 1.85379 1.23039 1.66968 1.07787 1.22906 1.03125 1.37396 1.04965 0.90842 1.24995 0.96288 0.96128 0.96181 1.70022 1.22902 1.42981 1.14334 0.86113 0.80748 0.79493 0.79120 1.19609 1.20545 1.20541 1.23691 0.94475 0.98122 0.87987 1.22351 0.99343 0.96541 0.97331 0.92540 0.92782 0.92866 0.91960 0.91524 0.92113 0.90500 0.88861 0.88985 0.89820 0.88434 0.85424 0.76409 0.89127 0.89060 0.92201 0.88526 0.89723 0.91450 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.84 37.16 0.33 -0.56 16 2 C -0.10 -0.64 3.51 -89.39 -0.31 -0.95 16 3 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.12 -0.87 6.36 -25.07 -0.16 -1.03 16 5 C -0.12 -0.99 5.69 -24.74 -0.14 -1.13 16 6 C -0.08 -0.62 2.45 -88.96 -0.22 -0.84 16 7 H 0.08 0.81 7.96 -51.93 -0.41 0.40 16 8 C -0.13 -1.00 4.88 -27.88 -0.14 -1.14 16 9 C 0.54 5.77 7.88 -10.98 -0.09 5.69 16 10 O -0.54 -7.55 15.38 5.56 0.09 -7.46 16 11 N -0.65 -5.98 3.69 -185.01 -0.68 -6.67 16 12 C 0.09 0.79 8.38 -8.50 -0.07 0.72 16 13 C 0.11 1.09 4.62 -67.69 -0.31 0.77 16 14 N -0.72 -8.68 5.39 -53.51 -0.29 -8.97 16 15 C 0.54 9.19 7.85 -10.99 -0.09 9.10 16 16 O -0.51 -10.62 15.46 5.56 0.09 -10.54 16 17 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 18 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 19 C -0.54 -14.99 9.50 30.94 0.29 -14.69 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.74 13.22 55.49 0.73 -25.00 16 23 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 C 0.08 0.64 8.24 -8.44 -0.07 0.57 16 28 C -0.12 -0.80 6.04 -25.50 -0.15 -0.96 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.50 7.85 -51.93 -0.41 0.09 16 34 H 0.06 0.48 8.00 -51.93 -0.42 0.07 16 35 H 0.08 0.80 7.17 -51.93 -0.37 0.43 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.60 8.06 -51.93 -0.42 0.18 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.13 1.29 7.45 -51.93 -0.39 0.91 16 41 H 0.40 4.26 8.76 -40.82 -0.36 3.90 16 42 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 43 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.07 0.46 7.68 -51.93 -0.40 0.06 16 48 H 0.06 0.40 7.84 -51.93 -0.41 -0.01 16 LS Contribution 405.05 15.07 6.10 6.10 Total: -1.00 -34.64 405.05 -10.39 -45.03 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -8.19 Total: 0.34 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -1.00 Total: -5.23 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: -0.24 Total: -40.64 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.17 Total: -18.00 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.64 -10.39 -45.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530350295.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.249 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds